Partial Atomic Charges

Partial atomic charges are numerical estimates of how electron density is distributed among atoms in a molecule, helping describe its polarity and electrostatic behavior. Because electrons are shared rather than assigned uniquely to individual atoms, computational methods derive these charges from molecular structure, quantum-mechanical electron density, or fits to the molecule’s electrostatic potential. In chemistry, partial atomic charges support molecular mechanics force fields, solvation and intermolecular interaction models, and predictions of reactivity, dipole moments, and binding behavior. Comparing charge-assignment methods also helps researchers evaluate how molecular environment and model choice influence simulations and interpretation.

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JoVE Core - Chemistry

Atomic Radii and Effective Nuclear Charge

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2020

The elements in groups of the periodic table exhibit similar chemical behavior. This similarity occurs because the members of a group have the same number and distribution of electrons in their valence shells. Going across a period from left to right, a proton is added to the nucleus and an electron to the valence shell with each successive element. Going down the elements in a group, the number of electrons in the valence shell remains constant, but the principal quantum number increases by...

Formal Charges

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2020

In some cases, there are seemingly more than one valid Lewis structures for molecules and polyatomic ions. The concept of formal charges can be used to help predict the most appropriate Lewis structure when more than one reasonable structure exists. Calculating Formal Charge The formal charge of an atom in a molecule is the hypothetical charge the atom would have if the electrons in the bonds are evenly distributed between the atoms. Alternatively, formal charge results when from the number...

Ions and Ionic Charges

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2020

In ordinary chemical reactions, the nucleus — which contains the protons and neutrons of each atom and thus identifies the element — remains unchanged. Electrons, however, can be added to atoms by transfer from other atoms, lost by transfer to other atoms, or shared with other atoms. The transfer and sharing of electrons among atoms govern the chemistry of the elements. During the formation of some compounds, atoms gain or lose electrons to form electrically charged particles called ions. When...

The Energies of Atomic Orbitals

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2020

In an atom, the negatively charged electrons are attracted to the positively charged nucleus. In a multielectron atom, electron-electron repulsions are also observed. The attractive and repulsive forces are dependent on the distance between the particles, as well as the sign and magnitude of the charges on the individual particles. When the charges on the particles are opposite, they attract each other. If both particles have the same charge, they repel each other. As the magnitude of the...

Atomic Mass

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2020

Atoms — and the protons, neutrons, and electrons that compose them — are extremely small. For example, a carbon atom weighs less than 2 × 10−23 g. When describing the properties of tiny objects such as atoms, we use appropriately small units of measure, such as the atomic mass unit (amu). The amu was originally defined based on hydrogen, the lightest element, then later in terms of oxygen. Since 1961, it has been defined with regard to the most abundant isotope of carbon, atoms of which are...

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