Thomas Junier

Vital-IT group, Swiss Institute of Bioinformatics

Affiliated withSwiss Institute of Bioinformatics

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 17	2016

Other Publications

Article	Year
New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features. BMC genomics\| PubMed ID: 17623054	2007
Biased distributions and decay of long interspersed nuclear elements in the chicken genome. Genetics\| PubMed ID: 17947446	2008
Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria. FEMS microbiology ecology\| PubMed ID: 18248438	2008
Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species. BMC genomics\| PubMed ID: 18405392	2008
The cis-acting replication elements define human enterovirus and rhinovirus species. RNA (New York, N.Y.)\| PubMed ID: 18541697	2008
TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets. Applied and environmental microbiology\| PubMed ID: 18757578	2008
Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon. Applied microbiology and biotechnology\| PubMed ID: 19274459	2009
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.)\| PubMed ID: 19390049	2009
New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. Emerging infectious diseases\| PubMed ID: 19402957	2009
The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection. AIDS (London, England)\| PubMed ID: 19487906	2009
Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Applied microbiology and biotechnology\| PubMed ID: 19830422	2010
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.)\| PubMed ID: 20075255	2010
The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics (Oxford, England)\| PubMed ID: 20472542	2010
The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1. Environmental microbiology\| PubMed ID: 20482743	2010
Rhinovirus genome evolution during experimental human infection. PloS one\| PubMed ID: 20485673	2010
Rhinovirus genome variation during chronic upper and lower respiratory tract infections. PloS one\| PubMed ID: 21713005	2011
Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes. Molecular biology and evolution\| PubMed ID: 22983951	2013
Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections. AIDS (London, England)\| PubMed ID: 23052354	2012
Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 23532479	2013
Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A. Applied and environmental microbiology\| PubMed ID: 23811505	2013
Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes. Environmental microbiology reports\| PubMed ID: 24249300	2013
Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments. Environmental microbiology reports\| PubMed ID: 25756117	2014
Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.). Genome announcements\| PubMed ID: 25838492	2015
Under-detection of endospore-forming Firmicutes in metagenomic data. Computational and structural biotechnology journal\| PubMed ID: 25973144	2015
Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species. Genome announcements\| PubMed ID: 26067952	2015
MLgsc: A Maximum-Likelihood General Sequence Classifier. PloS one\| PubMed ID: 26148002	2015
Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir. Genome announcements\| PubMed ID: 26316637	2015
Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent. Genome announcements\| PubMed ID: 26316638	2015
CEGA-a catalog of conserved elements from genomic alignments. Nucleic acids research\| PubMed ID: 26527719	2016
Diversity and ecology of oxalotrophic bacteria. World journal of microbiology & biotechnology\| PubMed ID: 26748805	2016