Pilar Junier

Laboratory of Microbiology, University of Neuchatel

Affiliated withUniversity of Neuchatel University of Neuchâtel

Research Area

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 17	2016
Publication title Cited by 3	2025

Other Publications

Article	Year
Ammonia-oxidizing beta-proteobacteria from the oxygen minimum zone off northern Chile. Applied and environmental microbiology\| PubMed ID: 17416686	2007
Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria. FEMS microbiology ecology\| PubMed ID: 18248438	2008
Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples. Applied and environmental microbiology\| PubMed ID: 18567688	2008
Comparative analysis of ammonia monooxygenase (amoA) genes in the water column and sediment-water interface of two lakes and the Baltic Sea. FEMS microbiology ecology\| PubMed ID: 18721144	2008
TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets. Applied and environmental microbiology\| PubMed ID: 18757578	2008
Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon. Applied microbiology and biotechnology\| PubMed ID: 19274459	2009
Metal reduction by spores of Desulfotomaculum reducens. Environmental microbiology\| PubMed ID: 19601961	2009
Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Applied microbiology and biotechnology\| PubMed ID: 19830422	2010
The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1. Environmental microbiology\| PubMed ID: 20482743	2010
Non-uraninite products of microbial U(VI) reduction. Environmental science & technology\| PubMed ID: 21069950	2010
Use of an isothermal microcalorimetry assay to characterize microbial oxalotrophic activity. FEMS microbiology ecology\| PubMed ID: 21696406	2011
Protection of Metal Artifacts with the Formation of Metal-Oxalates Complexes by Beauveria bassiana. Frontiers in microbiology\| PubMed ID: 22291684	2011
Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction. Environmental microbiology\| PubMed ID: 22928486	2012
Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A. Applied and environmental microbiology\| PubMed ID: 23811505	2013
Gains of bacterial flagellar motility in a fungal world. Applied and environmental microbiology\| PubMed ID: 23995942	2013
Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiments. FEMS microbiology letters\| PubMed ID: 24033776	2013
Isolation of oxalotrophic bacteria able to disperse on fungal mycelium. FEMS microbiology letters\| PubMed ID: 24106816	2013
Bacterial farming by the fungus Morchella crassipes. Proceedings. Biological sciences / The Royal Society\| PubMed ID: 24174111	2013
Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes. Environmental microbiology reports\| PubMed ID: 24249300	2013
Isolation and characterization of oxalotrophic bacteria from tropical soils. Archives of microbiology\| PubMed ID: 25381572	2015
Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments. Environmental microbiology reports\| PubMed ID: 25756117	2014
Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.). Genome announcements\| PubMed ID: 25838492	2015
Under-detection of endospore-forming Firmicutes in metagenomic data. Computational and structural biotechnology journal\| PubMed ID: 25973144	2015
Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species. Genome announcements\| PubMed ID: 26067952	2015
MLgsc: A Maximum-Likelihood General Sequence Classifier. PloS one\| PubMed ID: 26148002	2015
Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir. Genome announcements\| PubMed ID: 26316637	2015
Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent. Genome announcements\| PubMed ID: 26316638	2015
Exploiting the fungal highway: development of a novel tool for the in situ isolation of bacteria migrating along fungal mycelium. FEMS microbiology ecology\| PubMed ID: 26432804	2015
Metaproteomics and ultrastructure characterization of Komagataeibacter spp. involved in high-acid spirit vinegar production. Food microbiology\| PubMed ID: 26742622	2016
Diversity and ecology of oxalotrophic bacteria. World journal of microbiology & biotechnology\| PubMed ID: 26748805	2016
Effect of organic carbon and metal accumulation on the bacterial communities in sulphidogenic sediments. Environmental science and pollution research international\| PubMed ID: 26780045	2016
Anoxybacillusgeothermalis sp. nov., a facultatively anaerobic, endospore-forming bacterium isolated from mineral deposits in a geothermal station. International journal of systematic and evolutionary microbiology\| PubMed ID: 27126386	2016
An in situ inventory of fungi and their associated migrating bacteria in forest soils using fungal highway columns. FEMS microbiology ecology\| PubMed ID: 27797964	2017
A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes. Frontiers in microbiology\| PubMed ID: 27857706	2016
Use of Bacteria To Stabilize Archaeological Iron. Applied and environmental microbiology\| PubMed ID: 28283522	2017
Fungal Biorecovery of Gold From E-waste. Advances in applied microbiology\| PubMed ID: 28438268	2017
Microbial biotechnology approaches to mitigating the deterioration of construction and heritage materials. Microbial biotechnology\| PubMed ID: 28771996	2017
A historical legacy of antibiotic utilization on bacterial seed banks in sediments. PeerJ\| PubMed ID: 29312823	2018
Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects. Scientific reports\| PubMed ID: 29335593	2018
Bacterial-fungal interactions: ecology, mechanisms and challenges. FEMS microbiology reviews\| PubMed ID: 29471481	2018
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater. PeerJ\| PubMed ID: 29942682	2018
Remedial Treatment of Corroded Iron Objects by Environmental Isolates. Applied and environmental microbiology\| PubMed ID: 30478230	2019
Oxalic acid, a molecule at the crossroads of bacterial-fungal interactions. Advances in applied microbiology\| PubMed ID: 30798804	2019
Bacterial spores, from ecology to biotechnology. Advances in applied microbiology\| PubMed ID: 30798805	2019
Adaptive Strategies in a Poly-Extreme Environment: Differentiation of Vegetative Cells in and Resistance to Extreme Conditions. Frontiers in microbiology\| PubMed ID: 30804904	2019
Effect of Organic Carbon and Nitrogen on the Interactions of spp. and Bacteria Dispersing on Their Mycelium. Frontiers in microbiology\| PubMed ID: 30881350	2019
Comparison of the plant growth-promotion performance of a consortium of Bacilli inoculated as endospores or as vegetative cells. FEMS microbiology ecology\| PubMed ID: 31614367	2019
The wild-type flagellar filament of the Firmicute Kurthia at 2.8 Å resolution in vivo. Scientific reports\| PubMed ID: 31628388	2019
Metabolic processes applied to endangered metal and wood heritage objects: Call a microbial plumber! New biotechnology\| PubMed ID: 31706044	2020
SpeciesPrimer: a bioinformatics pipeline dedicated to the design of qPCR primers for the quantification of bacterial species. PeerJ\| PubMed ID: 32110486	2020
Investigation of Biogenic Passivating Layers on Corroded Iron. Materials (Basel, Switzerland)\| PubMed ID: 32155722	2020
Visualizing the invisible: class excursions to ignite children's enthusiasm for microbes. Microbial biotechnology\| PubMed ID: 32406115	2020
Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi. FEMS microbiology ecology\| PubMed ID: 33440006	2021
Development of a High-Throughput Microfluidic qPCR System for the Quantitative Determination of Quality-Relevant Bacteria in Cheese. Frontiers in microbiology\| PubMed ID: 33488561	2020
A versatile microfluidic platform measures hyphal interactions between Fusarium graminearum and Clonostachys rosea in real-time. Communications biology\| PubMed ID: 33637874	2021
Functional Diversity of the Litter-Associated Fungi from an Oxalate-Carbonate Pathway Ecosystem in Madagascar. Microorganisms\| PubMed ID: 34062900	2021
Soluble and solid iron reduction assays with . Bio-protocol\| PubMed ID: 34395795	2018
Widespread bacterial diversity within the bacteriome of fungi. Communications biology\| PubMed ID: 34621007	2021
High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota. BMC microbiology\| PubMed ID: 35130830	2022
Spores-on-a-chip: new frontiers for spore research. Trends in microbiology\| PubMed ID: 35346553	2022
Recent Advances in Fungal Infections: From Lung Ecology to Therapeutic Strategies With a Focus on . Frontiers in medicine\| PubMed ID: 35386908	2022
Advances and Challenges in Fluorescence Hybridization for Visualizing Fungal Endobacteria. Frontiers in microbiology\| PubMed ID: 35722318	2022
Complete Genome Sequences of the Soil Oxalotrophic Bacterium Cupriavidus oxalaticus Strain Ox1 and Its Derived mCherry-Tagged Strain. Microbiology resource announcements\| PubMed ID: 35924938	2022
Importance of appropriate genome information for the design of mating type primers in black and yellow morel populations. IMA fungus\| PubMed ID: 35996182	2022
Fungi-on-a-Chip: microfluidic platforms for single-cell studies on fungi. FEMS microbiology reviews\| PubMed ID: 36001464	2022
Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces. BMC biology\| PubMed ID: 36104696	2022
Spatial scales of competition and a growth-motility trade-off interact to determine bacterial coexistence. Royal Society open science\| PubMed ID: 36483758	2022
Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes. Environmental microbiology\| PubMed ID: 36530021	2022
Editorial: Microbial ecology and ecosystems from a Southern perspective. Frontiers in microbiology\| PubMed ID: 36545206	2022
Diversity of Lysis-Resistant Bacteria and Archaea in the Polyextreme Environment of Salar de Huasco. Frontiers in microbiology\| PubMed ID: 36687602	2022
Multiple roads lead to Rome: unique morphology and chemistry of endospores, exospores, myxospores, cysts and akinetes in bacteria. Microbiology (Reading, England)\| PubMed ID: 36804869	2023
Assessment of fungal spores and spore-like diversity in environmental samples by targeted lysis. BMC microbiology\| PubMed ID: 36918804	2023
Nutrients and flow shape the cyclic dominance games between strains. Philosophical transactions of the Royal Society of London. Series B, Biological sciences\| PubMed ID: 36934746	2023
The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research. Microbiome\| PubMed ID: 37626434	2023
Direct evidence for the role of microbial community composition in the formation of soil organic matter composition and persistence. ISME communications\| PubMed ID: 37938272	2021
Fungal drops: a novel approach for macro- and microscopic analyses of fungal mycelial growth. microLife\| PubMed ID: 37965130	2023
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between with spp. Frontiers in fungal biology\| PubMed ID: 38155707	2023
Host and nonhost bacteria support bacteriophage dissemination along mycelia and abiotic dispersal networks. microLife\| PubMed ID: 38463165	2024
Complete genome sequence of strain Ins1, a spore-forming filamentous bacterium isolated from a deep geothermal reservoir. Microbiology resource announcements\| PubMed ID: 38477458	2024
Gamification as a tool to teach key concepts in microbiology to bachelor-level students in biology: a case study using microbial interactions and soil functioning. Access microbiology\| PubMed ID: 38482366	2024
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial biotechnology\| PubMed ID: 38801001	2024
Using a Centroid-based approach for a reliable identification of morels (Morchella spp.): A case study for food authentication. Journal of food science\| PubMed ID: 38955792	2024
Temporal and spatial changes in the abundance of antibiotic resistance gene markers in a wastewater treatment plant. Water environment research : a research publication of the Water Environment Federation\| PubMed ID: 39164119	2024
Fabricated devices for performing bacterial-fungal interaction experiments across scales. Frontiers in microbiology\| PubMed ID: 39171270	2024
A cohesive strain cluster causes benthic cyanotoxic blooms in rivers worldwide. Water research X\| PubMed ID: 39308956	2024
Visualizing liquid distribution across hyphal networks with cellular resolution. Biomicrofluidics\| PubMed ID: 39381835	2024
A new species of true morel from Switzerland: , sp. nov. Mycologia\| PubMed ID: 39423308	2024
One-Step Soft Agar Enrichment and Isolation of Human Lung Bacteria Inhibiting the Germination of Conidia. Microorganisms\| PubMed ID: 39458334	2024