Sebastien Ourselin

Sebastien Ourselin

Center of Medical Imaging and Computing, UCL

Affiliated withUCLUniversity College LondonKing's College London

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 3
Year
A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery
Publication title

Cited by 19

2016
2018
2020

Other Publications

Article
Year
Comparison of phantom and registration scaling corrections using the ADNI cohort.

NeuroImage| PubMed ID: 19477282

2009
2010
2009
2010
Unifying encoding of spatial information in mutual information for nonrigid registration.

Information processing in medical imaging : proceedings of the ... conference| PubMed ID: 19694288

2009
Fast free-form deformation using graphics processing units.

Computer methods and programs in biomedicine| PubMed ID: 19818524

2010
2010
Patterns of cortical thickness according to APOE genotype in Alzheimer's disease.

Dementia and geriatric cognitive disorders| PubMed ID: 19940480

2009
2010
2010
2010
2010
Biopsy site re-localisation based on the computation of epipolar lines from two previous endoscopic images.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 20426024

2009
2015
Improved maximum a posteriori cortical segmentation by iterative relaxation of priors.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 20426142

2009
2011
A framework for using diffusion weighted imaging to improve cortical parcellation.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 20879272

2010
Increasing power to predict mild cognitive impairment conversion to Alzheimer's disease using hippocampal atrophy rate and statistical shape models.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 20879307

2010
A system for biopsy site re-targeting with uncertainty in gastroenterology and oropharyngeal examinations.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 20879354

2010
Establishing spatial correspondence between the inner colon surfaces from prone and supine CT colonography.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 20879437

2010
2011
2011
The importance of appropriate partial volume correction for PET quantification in Alzheimer's disease.

European journal of nuclear medicine and molecular imaging| PubMed ID: 21336694

2011
2011
2011
On the extraction of topologically correct thickness measurements using Khalimsky's cubic complex.

Information processing in medical imaging : proceedings of the ... conference| PubMed ID: 21761654

2011
An event-based disease progression model and its application to familial Alzheimer's disease.

Information processing in medical imaging : proceedings of the ... conference| PubMed ID: 21761701

2011
2011
2011
Longitudinal cortical thickness estimation using Khalimsky's cubic complex.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 21995062

2011
Adaptive neonate brain segmentation.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 22003722

2011
2012
2012
2012
2012
2012
2012
2012
2012
2013
2012
2013
2012
2012
Toward detection and localization of instruments in minimally invasive surgery.

IEEE transactions on bio-medical engineering| PubMed ID: 23192482

2013
Geodesic information flows.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 23286057

2012
Radial structure in the preterm cortex; persistence of the preterm phenotype at term equivalent age?

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 23286138

2012
2013
White matter tract signatures of the progressive aphasias.

Neurobiology of aging| PubMed ID: 23312804

2013
2013
2013
2013
2013
2013
2013
2013
Regional variability of imaging biomarkers in autosomal dominant Alzheimer's disease.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 24194552

2013
2014
2014
Attenuation correction synthesis for hybrid PET-MR scanners.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 24505660

2013
T2 relaxometry in the extremely-preterm brain at adolescence.

Magnetic resonance imaging| PubMed ID: 26723846

2016
Model-guided directional minimal path for fully automatic extraction of coronary centerlines from cardiac CTA.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 24505709

2013
2014
A Bayesian approach for spatially adaptive regularisation in non-rigid registration.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 24579118

2013
Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 24579152

2013
Measurement of myelin in the preterm brain: multi-compartment diffusion imaging and multi-component T2 relaxometry.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 24579158

2013
2014
2014
2014
A data-driven model of biomarker changes in sporadic Alzheimer's disease.

Brain : a journal of neurology| PubMed ID: 25012224

2014
2014
2014
A prospective evaluation of cardiovascular magnetic resonance measures of dyssynchrony in the prediction of response to cardiac resynchronization therapy.

Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance| PubMed ID: 25084814

2014
NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics.

International journal of computer assisted radiology and surgery| PubMed ID: 25241111

2015
2015
Multi-scale analysis of imaging features and its use in the study of COPD exacerbation susceptible phenotypes.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 25320827

2014
2014
2014
The NifTK software platform for image-guided interventions: platform overview and NiftyLink messaging.

International journal of computer assisted radiology and surgery| PubMed ID: 25408304

2015
Guest editorial. Neurobiology of aging.

Neurobiology of aging| PubMed ID: 25443292

2015
2015
2015
2015
2015
Three-dimensional analysis of implanted magnetic-resonance-visible meshes.

International urogynecology journal| PubMed ID: 25800904

2015
Stability, structure and scale: improvements in multi-modal vessel extraction for SEEG trajectory planning.

International journal of computer assisted radiology and surgery| PubMed ID: 25847663

2015
Practical PET Respiratory Motion Correction in Clinical PET/MR.

Journal of nuclear medicine : official publication, Society of Nuclear Medicine| PubMed ID: 25952740

2015
2015
Locally rigid, vessel-based registration for laparoscopic liver surgery.

International journal of computer assisted radiology and surgery| PubMed ID: 26092658

2015
Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers.

European journal of nuclear medicine and molecular imaging| PubMed ID: 26105119

2015
2015
Global image registration using a symmetric block-matching approach.

Journal of medical imaging (Bellingham, Wash.)| PubMed ID: 26158035

2014
Simulated field maps for susceptibility artefact correction in interventional MRI.

International journal of computer assisted radiology and surgery| PubMed ID: 26179219

2015
Magnetic resonance imaging in Alzheimer's Disease Neuroimaging Initiative 2.

Alzheimer's & dementia : the journal of the Alzheimer's Association| PubMed ID: 26194310

2015
A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes.

Information processing in medical imaging : proceedings of the ... conference| PubMed ID: 26221675

2015
2015
2015
2015
2015
2015
2015
2015
2015
2015
2014
2014
2014
2014
2014
2014
The habenula: an under-recognised area of importance in frontotemporal dementia?

Journal of neurology, neurosurgery, and psychiatry| PubMed ID: 26567261

2016
2015
2016
2016
The importance of correcting for signal drift in diffusion MRI.

Magnetic resonance in medicine| PubMed ID: 26822700

2017
2015
2016
Brain imaging in the assessment for epilepsy surgery.

The Lancet. Neurology| PubMed ID: 26925532

2016
2016
2015
2015
2015
2016
2016
Hand-eye calibration for rigid laparoscopes using an invariant point.

International journal of computer assisted radiology and surgery| PubMed ID: 26995597

2016
2016
2016
Combined 2D and 3D tracking of surgical instruments for minimally invasive and robotic-assisted surgery.

International journal of computer assisted radiology and surgery| PubMed ID: 27038963

2016
2016
Evaluation of Six Registration Methods for the Human Abdomen on Clinically Acquired CT.

IEEE transactions on bio-medical engineering| PubMed ID: 27254856

2016
2016
Estimation of an image derived input function with MR-defined carotid arteries in FDG-PET human studies using a novel partial volume correction method.

Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism| PubMed ID: 27342321

2016
2017
2016
2016
2016
2016
Joint PET-MR respiratory motion models for clinical PET motion correction.

Physics in medicine and biology| PubMed ID: 27524409

2016
2016
2016
Neurofilament light chain: a biomarker for genetic frontotemporal dementia.

Annals of clinical and translational neurology| PubMed ID: 27606344

2016
2016
2016
2016
2016
2017
2017
2017
Interventional Photoacoustic Imaging of the Human Placenta with Ultrasonic Tracking for Minimally Invasive Fetal Surgeries.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 28101537

2015
3D Ultrasonic Needle Tracking with a 1.5D Transducer Array for Guidance of Fetal Interventions.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 28111644

2016
GIFT-Cloud: A data sharing and collaboration platform for medical imaging research.

Computer methods and programs in biomedicine| PubMed ID: 28187889

2017
2017
2017
2017
2017
2017
2017
2017
2017
2017
2018
2017
2017
Anatomy-driven multiple trajectory planning (ADMTP) of intracranial electrodes for epilepsy surgery.

International journal of computer assisted radiology and surgery| PubMed ID: 28620830

2017
2017
2017
2017
2017
Fast and reproducible in vivo T mapping of the human cervical spinal cord.

Magnetic resonance in medicine| PubMed ID: 28736946

2018
Presymptomatic atrophy in autosomal dominant Alzheimer's disease: A serial magnetic resonance imaging study.

Alzheimer's & dementia : the journal of the Alzheimer's Association| PubMed ID: 28738187

2018
Guest editorial of the IJCARS MICCAI 2016 special issue.

International journal of computer assisted radiology and surgery| PubMed ID: 28744837

2017
2018
Ultrasonic Needle Tracking with a Fibre-Optic Ultrasound Transmitter for Guidance of Minimally Invasive Fetal Surgery.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention| PubMed ID: 28948240

2017
2018
2017
2018
Bullseye's representation of cerebral white matter hyperintensities.

Journal of neuroradiology. Journal de neuroradiologie| PubMed ID: 29132940

2018
2017
2018
2018
2017
2018
2018
2018
2018
2018
2018
2018
A Survey of Methods for 3D Histology Reconstruction.

Medical image analysis| PubMed ID: 29502034

2018
Evaluation of prospective motion correction of high-resolution 3D-T2-FLAIR acquisitions in epilepsy patients.

Journal of neuroradiology. Journal de neuroradiologie| PubMed ID: 29505841

2018
2018
Susceptibility of brain atrophy to in Alzheimer's disease, evidence from functional prioritization in imaging genetics.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 29511103

2018
2018
Clinical Impact of Respiratory Motion Correction in Simultaneous PET/MR with a Joint PET/MR Predictive Motion Model.

Journal of nuclear medicine : official publication, Society of Nuclear Medicine| PubMed ID: 29523630

2018
Structural and effective connectivity in focal epilepsy.

NeuroImage. Clinical| PubMed ID: 29527498

2018
2018
2018
NiftyNet: a deep-learning platform for medical imaging.

Computer methods and programs in biomedicine| PubMed ID: 29544777

2018
Retrieval and registration of long-range overlapping frames for scalable mosaicking of in vivo fetoscopy.

International journal of computer assisted radiology and surgery| PubMed ID: 29546573

2018
2018
In vivo estimation of target registration errors during augmented reality laparoscopic surgery.

International journal of computer assisted radiology and surgery| PubMed ID: 29663273

2018
Predicting Outcomes in Idiopathic Pulmonary Fibrosis Using Automated CT Analysis.

American journal of respiratory and critical care medicine| PubMed ID: 29684284

2018
2018
Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending.

International journal of computer assisted radiology and surgery| PubMed ID: 29736800

2018
Progression of regional grey matter atrophy in multiple sclerosis.

Brain : a journal of neurology| PubMed ID: 29741648

2018
Robot-assisted stereotactic brain biopsy: systematic review and bibliometric analysis.

Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery| PubMed ID: 29744625

2018
2018
2018
2018
2018
Towards computer-assisted TTTS: Laser ablation detection for workflow segmentation from fetoscopic video.

International journal of computer assisted radiology and surgery| PubMed ID: 29951938

2018
2018
2018
2018
Reduced acquisition time PET pharmacokinetic modelling using simultaneous ASL-MRI: proof of concept.

Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism| PubMed ID: 30182792

2019
2018
2018
Optimizing Trajectories for Cranial Laser Interstitial Thermal Therapy Using Computer-Assisted Planning: A Machine Learning Approach.

Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics| PubMed ID: 30520003

2019
2019
2019
2019
2019
2019
2019
2019
2019
Applying causal models to explore the mechanism of action of simvastatin in progressive multiple sclerosis.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 31072935

2019
A multi-shell multi-tissue diffusion study of brain connectivity in early multiple sclerosis.

Multiple sclerosis (Houndmills, Basingstoke, England)| PubMed ID: 31074686

2020
2019
2019
2019
Periventricular magnetisation transfer ratio abnormalities in multiple sclerosis improve after alemtuzumab.

Multiple sclerosis (Houndmills, Basingstoke, England)| PubMed ID: 31169059

2019
2019
2019
2019
2019
2019
2019
The quantitative neuroradiology initiative framework: application to dementia.

The British journal of radiology| PubMed ID: 31368776

2019
2020
2019
2019
Pruning strategies for efficient online globally consistent mosaicking in fetoscopy.

Journal of medical imaging (Bellingham, Wash.)| PubMed ID: 31403054

2019
Computer-Assisted Planning for Stereoelectroencephalography (SEEG).

Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics| PubMed ID: 31432448

2019
2020
2019
2019
2020
2019
2019
Photoacoustic imaging of the human placental vasculature.

Journal of biophotonics| PubMed ID: 31661594

2020
2019
2019
2020
2020
2019
2019
2020
2020
2020
2019
2019
2019
2020
2020
2020
2020
Basal forebrain atrophy in frontotemporal dementia.

NeuroImage. Clinical| PubMed ID: 32143137

2020
2020
The Dementias Platform UK (DPUK) Data Portal.

European journal of epidemiology| PubMed ID: 32328990

2020
2020
FetNet: a recurrent convolutional network for occlusion identification in fetoscopic videos.

International journal of computer assisted radiology and surgery| PubMed ID: 32350787

2020
2020
2020
Quantifying additional COVID-19 symptoms will save lives.

Lancet (London, England)| PubMed ID: 32505221

2020
2020
Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI.

International journal of computer assisted radiology and surgery| PubMed ID: 32676869

2020
2020
2021
2020
Deep learning-based fetoscopic mosaicking for field-of-view expansion.

International journal of computer assisted radiology and surgery| PubMed ID: 32808148

2020
2020
2020
2021
2020
2020
2021
The future of digital health with federated learning.

NPJ digital medicine| PubMed ID: 33015372

2020
2020
OCT Signal Enhancement with Deep Learning.

Ophthalmology. Glaucoma| PubMed ID: 33069883

2020
2021
2021
2021
2020
2020
A generative model of hyperelastic strain energy density functions for multiple tissue brain deformation.

International journal of computer assisted radiology and surgery| PubMed ID: 33165705

2021
Association of social distancing and masking with risk of COVID-19.

medRxiv : the preprint server for health sciences| PubMed ID: 33200150

2020
2021
2021
Refractive Two-View Reconstruction for Underwater 3D Vision.

International journal of computer vision| PubMed ID: 33343083

2020
2020
2020
2021
2021
2021
2019
2020
2021
Racial and ethnic differences in COVID-19 vaccine hesitancy and uptake.

medRxiv : the preprint server for health sciences| PubMed ID: 33655271

2021
2021
Attributes and predictors of long COVID.

Nature medicine| PubMed ID: 33692530

2021
A population-based study of head injury, cognitive function and pathological markers.

Annals of clinical and translational neurology| PubMed ID: 33694298

2021