Tom Beeckman

Department of Plant Systems Biology, Ghent

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 8	2016

Other Publications

Article	Year
Nitrate contra auxin: nutrient sensing by roots. Developmental cell\| PubMed ID: 20627068	2010
Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor. The EMBO journal\| PubMed ID: 11889041	2002
Auxin-mediated cell cycle activation during early lateral root initiation. The Plant cell\| PubMed ID: 12368490	2002
Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis. Plant physiology\| PubMed ID: 12481071	2002
An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 12581312	2003
Changes in hydrogen peroxide homeostasis trigger an active cell death process in tobacco. The Plant journal : for cell and molecular biology\| PubMed ID: 12609037	2003
Dissecting Arabidopsis lateral root development. Trends in plant science\| PubMed ID: 12711228	2003
The Arabidopsis locus RCB mediates upstream regulation of mitotic gene expression. Plant physiology\| PubMed ID: 14681535	2003
Phenotypic alterations in Arabidopsis thaliana plants caused by Rhodococcus fascians infection. Journal of plant research\| PubMed ID: 14968352	2004
B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana. The Plant cell\| PubMed ID: 15031414	2004
Transcript profiling of early lateral root initiation. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15051881	2004
Disclosing the subterranean treasury of plants. Trends in biotechnology\| PubMed ID: 15283977	2004
The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes. The Plant cell\| PubMed ID: 15863515	2005
Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development (Cambridge, England)\| PubMed ID: 16192309	2005
Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana. The Plant cell\| PubMed ID: 16243906	2005
Lateral root initiation or the birth of a new meristem. Plant molecular biology\| PubMed ID: 16724258	2006
A novel role for abscisic acid emerges from underground. Trends in plant science\| PubMed ID: 16890475	2006
A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis. Molecular plant-microbe interactions : MPMI\| PubMed ID: 17153927	2006
Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint. The Plant cell\| PubMed ID: 17209125	2007
Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development (Cambridge, England)\| PubMed ID: 17215297	2007
Ethylene regulates root growth through effects on auxin biosynthesis and transport-dependent auxin distribution. The Plant cell\| PubMed ID: 17630274	2007
The ins and outs of the plant cell cycle. Nature reviews. Molecular cell biology\| PubMed ID: 17643126	2007
Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation. Plant physiology\| PubMed ID: 17993548	2008
Cytokinins act directly on lateral root founder cells to inhibit root initiation. The Plant cell\| PubMed ID: 18065686	2007
A role for AtWRKY23 in feeding site establishment of plant-parasitic nematodes. Plant physiology\| PubMed ID: 18599655	2008
The auxin influx carrier LAX3 promotes lateral root emergence. Nature cell biology\| PubMed ID: 18622388	2008
Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. Science (New York, N.Y.)\| PubMed ID: 18948541	2008
Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana. Nature genetics\| PubMed ID: 18997783	2008
Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana. Plant, cell & environment\| PubMed ID: 19344332	2009
Systematic analysis of cell-cycle gene expression during Arabidopsis development. The Plant journal : for cell and molecular biology\| PubMed ID: 19392699	2009
Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. Chemistry & biology\| PubMed ID: 19549598	2009
Arabidopsis lateral root development: an emerging story. Trends in plant science\| PubMed ID: 19559642	2009
Gene silencing induced by hairpin or inverted repeated sense transgenes varies among promoters and cell types. The New phytologist\| PubMed ID: 19732349	2009
The past, present, and future of chemical biology in auxin research. ACS chemical biology\| PubMed ID: 19736989	2009
Manipulation of auxin transport in plant roots during Rhizobium symbiosis and nematode parasitism. The Plant cell\| PubMed ID: 19789282	2009
Receptor-like kinases shape the plant. Nature cell biology\| PubMed ID: 19794500	2009
Bimodular auxin response controls organogenesis in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20133796	2010
VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets. Plant physiology\| PubMed ID: 20219832	2010
Auxin control of root development. Cold Spring Harbor perspectives in biology\| PubMed ID: 20516130	2010
Cyclin-dependent kinase activity maintains the shoot apical meristem cells in an undifferentiated state. The Plant journal : for cell and molecular biology\| PubMed ID: 20659279	2010
The roots of a new green revolution. Trends in plant science\| PubMed ID: 20851036	2010
A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Current biology : CB\| PubMed ID: 20888232	2010
Strigolactones affect lateral root formation and root-hair elongation in Arabidopsis. Planta\| PubMed ID: 21080198	2011
Unraveling the evolution of auxin signaling. Plant physiology\| PubMed ID: 21081694	2011
Asymmetric cell division in land plants and algae: the driving force for differentiation. Nature reviews. Molecular cell biology\| PubMed ID: 21346731	2011
Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21464319	2011
A novel protein family mediates Casparian strip formation in the endodermis. Nature\| PubMed ID: 21593871	2011
Model-based analysis of Arabidopsis leaf epidermal cells reveals distinct division and expansion patterns for pavement and guard cells. Plant physiology\| PubMed ID: 21693673	2011
Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis. The EMBO journal\| PubMed ID: 21772250	2011
Auxin-dependent cell cycle reactivation through transcriptional regulation of Arabidopsis E2Fa by lateral organ boundary proteins. The Plant cell\| PubMed ID: 22003076	2011
Arabidopsis α Aurora kinases function in formative cell division plane orientation. The Plant cell\| PubMed ID: 22045917	2011
Analyzing lateral root development: how to move forward. The Plant cell\| PubMed ID: 22227890	2012
A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature\| PubMed ID: 22246322	2012
Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22307611	2012
Strigolactones suppress adventitious rooting in Arabidopsis and pea. Plant physiology\| PubMed ID: 22323776	2012
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22393022	2012
GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. Developmental cell\| PubMed ID: 22421050	2012
In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis. Philosophical transactions of the Royal Society of London. Series B, Biological sciences\| PubMed ID: 22527390	2012
Phloem-associated auxin response maxima determine radial positioning of lateral roots in maize. Philosophical transactions of the Royal Society of London. Series B, Biological sciences\| PubMed ID: 22527395	2012
Repression of early lateral root initiation events by transient water deficit in barley and maize. Philosophical transactions of the Royal Society of London. Series B, Biological sciences\| PubMed ID: 22527396	2012
Plasma membrane calcium ATPases are important components of receptor-mediated signaling in plant immune responses and development. Plant physiology\| PubMed ID: 22535420	2012
Small-molecule dissection of brassinosteroid signaling. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 22576088	2012
Tackling drought stress: receptor-like kinases present new approaches. The Plant cell\| PubMed ID: 22693282	2012
Auxin and epigenetic regulation of SKP2B, an F-box that represses lateral root formation. Plant physiology\| PubMed ID: 22837358	2012
Expansive evolution of the trehalose-6-phosphate phosphatase gene family in Arabidopsis. Plant physiology\| PubMed ID: 22855938	2012
A role for the root cap in root branching revealed by the non-auxin probe naxillin. Nature chemical biology\| PubMed ID: 22885787	2012
Strigolactones are involved in root response to low phosphate conditions in Arabidopsis. Plant physiology\| PubMed ID: 22968830	2012
Plant developmental biologists meet on stairways in Matera. Development (Cambridge, England)\| PubMed ID: 22991434	2012
Auxin reflux between the endodermis and pericycle promotes lateral root initiation. The EMBO journal\| PubMed ID: 23178590	2013
SCF(TIR1/AFB)-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism. The EMBO journal\| PubMed ID: 23211744	2013
Redundant and non-redundant roles of the trehalose-6-phosphate phosphatases in leaf growth, root hair specification and energy-responses in Arabidopsis. Plant signaling & behavior\| PubMed ID: 23299328	2013
Inducible system for lateral roots in Arabidopsis thaliana and maize. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 23299673	2013
Adventitious root induction in Arabidopsis thaliana as a model for in vitro root organogenesis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 23299674	2013
Small-molecule screens to study lateral root development. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 23299676	2013
Overexpression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in abscisic acid-induced stomatal closure. Plant physiology\| PubMed ID: 23341362	2013
Transcriptional and functional classification of the GOLVEN/ROOT GROWTH FACTOR/CLE-like signaling peptides reveals their role in lateral root and hair formation. Plant physiology\| PubMed ID: 23370719	2013
Differences in dichogamy and herkogamy contribute to higher selfing in contrasting environments in the annual Blackstonia perfoliata (Gentianaceae). Annals of botany\| PubMed ID: 23408833	2013
Lateral root development in Arabidopsis: fifty shades of auxin. Trends in plant science\| PubMed ID: 23701908	2013
Post-embryonic root organogenesis in cereals: branching out from model plants. Trends in plant science\| PubMed ID: 23727199	2013
Traffic control in the root: keeping root branching in check. Developmental cell\| PubMed ID: 23906059	2013
A new role for glutathione in the regulation of root architecture linked to strigolactones. Plant, cell & environment\| PubMed ID: 23906110	2014
Comparative transcriptomics as a tool for the identification of root branching genes in maize. Plant biotechnology journal\| PubMed ID: 23941360	2013
GOLVEN peptides as important regulatory signalling molecules of plant development. Journal of experimental botany\| PubMed ID: 23975768	2013
Message in a bottle: small signalling peptide outputs during growth and development. Journal of experimental botany\| PubMed ID: 24014870	2013
To branch or not to branch: the role of pre-patterning in lateral root formation. Development (Cambridge, England)\| PubMed ID: 24130327	2013
Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Molecular systems biology\| PubMed ID: 24150423	2013
Tightly controlled WRKY23 expression mediates Arabidopsis embryo development. EMBO reports\| PubMed ID: 24157946	2013
The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development. Journal of experimental botany\| PubMed ID: 24179095	2013
Fully automated compound screening in Arabidopsis thaliana seedlings. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24306857	2014
A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development. Nature cell biology\| PubMed ID: 24362628	2014
Synthetic molecules: helping to unravel plant signal transduction. Journal of chemical biology\| PubMed ID: 24432124	2013
Auxin transport and activity regulate stomatal patterning and development. Nature communications\| PubMed ID: 24463772	2014
Cell-to-cell communication during lateral root development. Molecular plant\| PubMed ID: 24499770	2014
A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis. The New phytologist\| PubMed ID: 24533947	2014
Pericycle. Current biology : CB\| PubMed ID: 24845660	2014
The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development. Plant physiology\| PubMed ID: 24879433	2014
Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation. Science (New York, N.Y.)\| PubMed ID: 25081480	2014
Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis. Science (New York, N.Y.)\| PubMed ID: 25104393	2014
Three-dimensional patterns of cell division and expansion throughout the development of Arabidopsis thaliana leaves. Journal of experimental botany\| PubMed ID: 25205574	2014
Photopolarization of Fucus zygotes is determined by time sensitive vectorial addition of environmental cues during axis amplification. Frontiers in plant science\| PubMed ID: 25691888	2015
Calcium is an organizer of cell polarity in plants. Biochimica et biophysica acta\| PubMed ID: 25725133	2015
Root Cap-Derived Auxin Pre-patterns the Longitudinal Axis of the Arabidopsis Root. Current biology : CB\| PubMed ID: 25959963	2015
Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis. Plant physiology\| PubMed ID: 26041787	2015
The GLV6/RGF8/CLEL2 peptide regulates early pericycle divisions during lateral root initiation. Journal of experimental botany\| PubMed ID: 26163695	2015
Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays. Journal of experimental botany\| PubMed ID: 26195730	2015
OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant physiology\| PubMed ID: 26424158	2015
Strigolactones spatially influence lateral root development through the cytokinin signaling network. Journal of experimental botany\| PubMed ID: 26519957	2016
Cytokinin response factors regulate PIN-FORMED auxin transporters. Nature communications\| PubMed ID: 26541513	2015
A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature communications\| PubMed ID: 26578065	2015
Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism. Nature communications\| PubMed ID: 26578169	2015
Aurora Kinases Throughout Plant Development. Trends in plant science\| PubMed ID: 26616196	2016