Pavel Tomancak

Max Planck Institute of Molecular Cell Biology and Genetics

Affiliated withMax Planck Institute of Molecular Cell Biology and Genetics Center for Systems Biology Dresden

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 60	2016
Publication title Cited by 2	2019

Other Publications

Article	Year
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 11805330	2002
Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome biology\| PubMed ID: 12537577	2002
Computational identification of Drosophila microRNA genes. Genome biology\| PubMed ID: 12844358	2003
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16330759	2005
Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome biology\| PubMed ID: 17645804	2007
Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach. BMC neuroscience\| PubMed ID: 17672901	2007
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell\| PubMed ID: 17923096	2007
Mapping the gene expression universe. Current opinion in genetics & development\| PubMed ID: 18809490	2008
Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. Genome biology\| PubMed ID: 19087263	2008
Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics (Oxford, England)\| PubMed ID: 19346324	2009
CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinformatics (Oxford, England)\| PubMed ID: 19376822	2009
A toolkit for high-throughput, cross-species gene engineering in Drosophila. Nature methods\| PubMed ID: 19465918	2009
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome. Genome biology\| PubMed ID: 19589141	2009
In vivo RNAi rescue in Drosophila melanogaster with genomic transgenes from Drosophila pseudoobscura. PloS one\| PubMed ID: 20126626	2010
Visualization of image data from cells to organisms. Nature methods\| PubMed ID: 20195255	2010
Mapping the complexity of transcription control in higher eukaryotes. Genome biology\| PubMed ID: 20441601	2010
Software for bead-based registration of selective plane illumination microscopy data. Nature methods\| PubMed ID: 20508634	2010
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinformatics (Oxford, England)\| PubMed ID: 20529937	2010
An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes. Bioinformatics (Oxford, England)\| PubMed ID: 20624780	2010
Meeting report: first light sheet based fluorescence microscopy workshop. Biotechnology journal\| PubMed ID: 20652906	2010
An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. PLoS biology\| PubMed ID: 20957184	2010
Gene expression divergence recapitulates the developmental hourglass model. Nature\| PubMed ID: 21150996	2010
linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics (Oxford, England)\| PubMed ID: 21596792	2011
Restoration of uneven illumination in light sheet microscopy images. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada\| PubMed ID: 21682937	2011
Production of fosmid genomic libraries optimized for liquid culture recombineering and cross-species transgenesis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 22065453	2011
Recombination-mediated genetic engineering of large genomic DNA transgenes. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 22065454	2011
Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus. Cerebral cortex (New York, N.Y. : 1991)\| PubMed ID: 22114084	2012
The evolution of early animal embryos: conservation or divergence? Trends in ecology & evolution\| PubMed ID: 22520868	2012
Elastic volume reconstruction from series of ultra-thin microscopy sections. Nature methods\| PubMed ID: 22688414	2012
TrakEM2 software for neural circuit reconstruction. PloS one\| PubMed ID: 22723842	2012
Current challenges in open-source bioimage informatics. Nature methods\| PubMed ID: 22743770	2012
Fiji: an open-source platform for biological-image analysis. Nature methods\| PubMed ID: 22743772	2012
Biological imaging software tools. Nature methods\| PubMed ID: 22743775	2012
ImgLib2--generic image processing in Java. Bioinformatics (Oxford, England)\| PubMed ID: 22962343	2012
An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis. PLoS genetics\| PubMed ID: 23300473	2012
OpenSPIM: an open-access light-sheet microscopy platform. Nature methods\| PubMed ID: 23749304	2013
The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell reports\| PubMed ID: 24440719	2014
Going "open" with mesoscopy: a new dimension on multi-view imaging. Protoplasma\| PubMed ID: 24442669	2014
Bioimage Informatics in the context of Drosophila research. Methods (San Diego, Calif.)\| PubMed ID: 24732429	2014
Efficient Bayesian-based multiview deconvolution. Nature methods\| PubMed ID: 24747812	2014
Open-source solutions for SPIMage processing. Methods in cell biology\| PubMed ID: 24974045	2014
Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences. BioEssays : news and reviews in molecular, cellular and developmental biology\| PubMed ID: 25400101	2015
An adaptive threshold in mammalian neocortical evolution. PLoS biology\| PubMed ID: 25405475	2014
Guide to light-sheet microscopy for adventurous biologists. Nature methods\| PubMed ID: 25549268	2015
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. eLife\| PubMed ID: 25838129	2015
Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila. Developmental cell\| PubMed ID: 25942626	2015
BigDataViewer: visualization and processing for large image data sets. Nature methods\| PubMed ID: 26020499	2015
Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy. Mechanisms of development\| PubMed ID: 26428533	2015
An automated workflow for parallel processing of large multiview SPIM recordings. Bioinformatics (Oxford, England)\| PubMed ID: 26628585	2015
A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis. Developmental biology\| PubMed ID: 26851213	2016
A genome-wide resource for the analysis of protein localisation in Drosophila. eLife\| PubMed ID: 26896675	2016
Comment on "Cortical folding scales universally with surface area and thickness, not number of neurons". Science (New York, N.Y.)\| PubMed ID: 26912886	2016
Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch. Development (Cambridge, England)\| PubMed ID: 30642837	2019
Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects. Nature\| PubMed ID: 30918398	2019
Publisher Correction: Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects. Nature\| PubMed ID: 30971828	2019