Quanhu Sheng

Department of Cancer Biology, Vanderbilt University School of Medicine

Affiliated withVanderbilt University School of Medicine

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 40	2016

Other Publications

Article	Year
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinformatics (Oxford, England)\| PubMed ID: 18033797	2008
Quantitative comparison of sarcomeric phosphoproteomes of neonatal and adult rat hearts. American journal of physiology. Heart and circulatory physiology\| PubMed ID: 18552161	2008
A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry. Rapid communications in mass spectrometry : RCM\| PubMed ID: 18853404	2008
ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics. Rapid communications in mass spectrometry : RCM\| PubMed ID: 18985620	2008
On the estimation of false positives in peptide identifications using decoy search strategy. Proteomics\| PubMed ID: 19053142	2009
A platform to standardize, store, and visualize proteomics experimental data. Acta biochimica et biophysica Sinica\| PubMed ID: 19352541	2009
A bayesian approach to protein inference problem in shotgun proteomics. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 19645593	2009
Proteomic changes in the photoreceptor outer segment upon intense light exposure. Journal of proteome research\| PubMed ID: 20020778	2010
SRMBuilder: a user-friendly tool for selected reaction monitoring data analysis. Journal of bioinformatics and computational biology\| PubMed ID: 22144253	2011
BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics. Journal of proteome research\| PubMed ID: 22217156	2012
Delicate analysis of post-translational modifications on Dishevelled 3. Journal of proteome research\| PubMed ID: 22612246	2012
Serum Proteome Changes in Healthy Subjects with Different Genotypes of NOS1AP in the Chinese Population. Journal of diabetes research\| PubMed ID: 23671866	2013
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. PloS one\| PubMed ID: 23977046	2013
Very low-level heteroplasmy mtDNA variations are inherited in humans. Journal of genetics and genomics = Yi chuan xue bao\| PubMed ID: 24377867	2013
Systematic assessment of survey scan and MS2-based abundance strategies for label-free quantitative proteomics using high-resolution MS data. Journal of proteome research\| PubMed ID: 24635752	2014
Multi-perspective quality control of Illumina exome sequencing data using QC3. Genomics\| PubMed ID: 24703969	2014
O18Quant: a semiautomatic strategy for quantitative analysis of high-resolution 16O/18O labeled data. BioMed research international\| PubMed ID: 24901003	2014
MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control. BioMed research international\| PubMed ID: 24977143	2014
Advanced heat map and clustering analysis using heatmap3. BioMed research international\| PubMed ID: 25143956	2014
DupChecker: a bioconductor package for checking high-throughput genomic data redundancy in meta-analysis. BMC bioinformatics\| PubMed ID: 25267467	2014
ICan: an optimized ion-current-based quantification procedure with enhanced quantitative accuracy and sensitivity in biomarker discovery. Journal of proteome research\| PubMed ID: 25285707	2014
Illumina human exome genotyping array clustering and quality control. Nature protocols\| PubMed ID: 25321409	2014
Detection of internal exon deletion with exon Del. BMC bioinformatics\| PubMed ID: 25322818	2014
RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment. Cancer informatics\| PubMed ID: 25374457	2014
Preprocessing significantly improves the peptide/protein identification sensitivity of high-resolution isobarically labeled tandem mass spectrometry data. Molecular & cellular proteomics : MCP\| PubMed ID: 25435543	2015
Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans. Journal of proteome research\| PubMed ID: 25686393	2015
Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data. Journal of proteome research\| PubMed ID: 26390080	2015
Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes. BMC genomics\| PubMed ID: 26400237	2015
RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library. BioMed research international\| PubMed ID: 26543871	2015
Practicability of detecting somatic point mutation from RNA high throughput sequencing data. Genomics\| PubMed ID: 27046520	2016
Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument. PloS one\| PubMed ID: 27472422	2016
High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML. Cell reports\| PubMed ID: 27498870	2016
lncRNA expression in the auditory forebrain during postnatal development. Gene\| PubMed ID: 27544636	2016
Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk. Genetics\| PubMed ID: 27585849	2016
Multi-perspective quality control of Illumina RNA sequencing data analysis. Briefings in functional genomics\| PubMed ID: 27687708	2016
RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining. International journal of genomics\| PubMed ID: 27774452	2016