Mikio Nishimura

Department of Cell Biology, national institute for basic biology

Affiliated withnational institute for basic biology

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 9	2017

Other Publications

Article	Year
Calcium-mediated association of a putative vacuolar sorting receptor PV72 with a propeptide of 2S albumin. The Journal of biological chemistry\| PubMed ID: 11748226	2002
Ped3p is a peroxisomal ATP-binding cassette transporter that might supply substrates for fatty acid beta-oxidation. Plant & cell physiology\| PubMed ID: 11828016	2002
Activation of Arabidopsis vacuolar processing enzyme by self-catalytic removal of an auto-inhibitory domain of the C-terminal propeptide. Plant & cell physiology\| PubMed ID: 11867693	2002
Distribution and characterization of peroxisomes in Arabidopsis by visualization with GFP: dynamic morphology and actin-dependent movement. Plant & cell physiology\| PubMed ID: 11917088	2002
Subcellular localization of endo-beta-N-acetylglucosaminidase and high-mannose type free N-glycans in plant cell. Biochimica et biophysica acta\| PubMed ID: 11960687	2002
Direct interaction and determination of binding domains among peroxisomal import factors in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 11978862	2002
Proteomic analysis of leaf peroxisomal proteins in greening cotyledons of Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 12154131	2002
A vacuolar sorting receptor PV72 on the membrane of vesicles that accumulate precursors of seed storage proteins (PAC vesicles). Plant & cell physiology\| PubMed ID: 12407187	2002
Altered shoot/root Na+ distribution and bifurcating salt sensitivity in Arabidopsis by genetic disruption of the Na+ transporter AtHKT1. FEBS letters\| PubMed ID: 12417304	2002
An endoplasmic reticulum-derived structure that is induced under stress conditions in Arabidopsis. Plant physiology\| PubMed ID: 12481064	2002
Molecular characterization of an Arabidopsis acyl-coenzyme a synthetase localized on glyoxysomal membranes. Plant physiology\| PubMed ID: 12481085	2002
PCP in 2003: rapid reviewing and rapid publication. Plant & cell physiology\| PubMed ID: 12552140	2003
A novel ER-derived compartment, the ER body, selectively accumulates a beta-glucosidase with an ER-retention signal in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 12581307	2003
Presence of glyoxylate cycle enzymes in the mitochondria of Euglena gracilis. The Journal of eukaryotic microbiology\| PubMed ID: 12744520	2003
Biosynthetic processing of cathepsins and lysosomal degradation are abolished in asparaginyl endopeptidase-deficient mice. The Journal of biological chemistry\| PubMed ID: 12775715	2003
Existence of catalase-less peroxisomes in Sf21 insect cells. Biochemical and biophysical research communications\| PubMed ID: 12788084	2003
Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana. The Journal of biological chemistry\| PubMed ID: 12799370	2003
The ER body, a novel endoplasmic reticulum-derived structure in Arabidopsis. Plant & cell physiology\| PubMed ID: 12881493	2003
Why green fluorescent fusion proteins have not been observed in the vacuoles of higher plants. The Plant journal : for cell and molecular biology\| PubMed ID: 12904216	2003
C-terminal KDEL sequence of a KDEL-tailed cysteine proteinase (sulfhydryl-endopeptidase) is involved in formation of KDEL vesicle and in efficient vacuolar transport of sulfhydryl-endopeptid... Plant physiology\| PubMed ID: 12913146	2003
Identification of peroxisomal targeting signal of pumpkin catalase and the binding analysis with PTS1 receptor. The Plant journal : for cell and molecular biology\| PubMed ID: 12943550	2003
Novel glyoxysomal protein kinase, GPK1, identified by proteomic analysis of glyoxysomes in etiolated cotyledons of Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 14581625	2003
The slow wound-response of gammaVPE is regulated by endogenous salicylic acid in Arabidopsis. Planta\| PubMed ID: 14600834	2004
Entering a new era of research on plant peroxisomes. Current opinion in plant biology\| PubMed ID: 14611956	2003
[The metabolic survey of plant peroxisomes from proteomic analysis]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme\| PubMed ID: 14631797	2003
Behavior of vacuoles during microspore and pollen development in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 14634156	2003
Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 14657332	2003
Functional differentiation of peroxisomes revealed by expression profiles of peroxisomal genes in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 14701923	2003
An ER-localized form of PV72, a seed-specific vacuolar sorting receptor, interferes the transport of an NPIR-containing proteinase in Arabidopsis leaves. Plant & cell physiology\| PubMed ID: 14749481	2004
An Arabidopsis dynamin-related protein, DRP3A, controls both peroxisomal and mitochondrial division. The Plant journal : for cell and molecular biology\| PubMed ID: 15086806	2004
NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER body. The Plant cell\| PubMed ID: 15155889	2004
[Research on protein targeting innovates on present knowledge of plant peroxisomes]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme\| PubMed ID: 15168496	2004
A plant vacuolar protease, VPE, mediates virus-induced hypersensitive cell death. Science (New York, N.Y.)\| PubMed ID: 15297671	2004
Diversity and formation of endoplasmic reticulum-derived compartments in plants. Are these compartments specific to plant cells? Plant physiology\| PubMed ID: 15542497	2004
Differential contribution of two peroxisomal protein receptors to the maintenance of peroxisomal functions in Arabidopsis. The Journal of biological chemistry\| PubMed ID: 15637057	2005
Cryptochromes and phytochromes synergistically regulate Arabidopsis root greening under blue light. Plant & cell physiology\| PubMed ID: 15653798	2004
The involvement of tonoplast proton pumps and Na+(K+)/H+ exchangers in the change of petal color during flower opening of Morning Glory, Ipomoea tricolor cv. Heavenly Blue. Plant & cell physiology\| PubMed ID: 15695444	2005
A vacuolar processing enzyme, deltaVPE, is involved in seed coat formation at the early stage of seed development. The Plant cell\| PubMed ID: 15705955	2005
Endosomal proteases facilitate the fusion of endosomes with vacuoles at the final step of the endocytotic pathway. The Plant journal : for cell and molecular biology\| PubMed ID: 15743452	2005
Peroxisomal localization of a myosin XI isoform in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 15792961	2005
[Vacuolar processing enzyme exhibiting caspase 1-like activity is involved in plant programmed cell death]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme\| PubMed ID: 15828280	2005
KATAMARI1/MURUS3 Is a novel golgi membrane protein that is required for endomembrane organization in Arabidopsis. The Plant cell\| PubMed ID: 15863516	2005
Asparagine endopeptidase is not essential for class II MHC antigen presentation but is required for processing of cathepsin L in mice. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 15905550	2005
Vacuolar processing enzyme: an executor of plant cell death. Current opinion in plant biology\| PubMed ID: 15939660	2005
Vacuolar processing enzyme is essential for mycotoxin-induced cell death in Arabidopsis thaliana. The Journal of biological chemistry\| PubMed ID: 16043487	2005
AtVAM3 is required for normal specification of idioblasts, myrosin cells. Plant & cell physiology\| PubMed ID: 16306062	2006
Plant peroxisomes. Vitamins and hormones\| PubMed ID: 16492470	2005
The Arabidopsis pex12 and pex13 mutants are defective in both PTS1- and PTS2-dependent protein transport to peroxisomes. The Plant journal : for cell and molecular biology\| PubMed ID: 16813573	2006
AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins. Plant & cell physiology\| PubMed ID: 16926167	2006
Arabidopsis thaliana--a model organism to study plant peroxisomes. Biochimica et biophysica acta\| PubMed ID: 17005266	2006
MAIGO2 is involved in exit of seed storage proteins from the endoplasmic reticulum in Arabidopsis thaliana. The Plant cell\| PubMed ID: 17194767	2006
Legumain/asparaginyl endopeptidase controls extracellular matrix remodeling through the degradation of fibronectin in mouse renal proximal tubular cells. FEBS letters\| PubMed ID: 17350006	2007
Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants. Plant & cell physiology\| PubMed ID: 17478547	2007
The plant organelles database (PODB): a collection of visualized plant organelles and protocols for plant organelle research. Nucleic acids research\| PubMed ID: 17932059	2008
Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice. Planta\| PubMed ID: 17938955	2008
Galactolipid synthesis in chloroplast inner envelope is essential for proper thylakoid biogenesis, photosynthesis, and embryogenesis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17940034	2007
Cytosolic HSP90 regulates the heat shock response that is responsible for heat acclimation in Arabidopsis thaliana. The Journal of biological chemistry\| PubMed ID: 17965410	2007
Arabidopsis VPS35, a retromer component, is required for vacuolar protein sorting and involved in plant growth and leaf senescence. Plant & cell physiology\| PubMed ID: 18222962	2008
Proteomic analysis of highly purified peroxisomes from etiolated soybean cotyledons. Plant & cell physiology\| PubMed ID: 18281324	2008
Plant catalase is imported into peroxisomes by Pex5p but is distinct from typical PTS1 import. Plant & cell physiology\| PubMed ID: 18308759	2008
Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 18467340	2008
Localization of myo-inositol-1-phosphate synthase to the endosperm in developing seeds of Arabidopsis. Journal of experimental botany\| PubMed ID: 18603618	2008
AtMap1: a DNA microarray for genomic deletion mapping in Arabidopsis thaliana. The Plant journal : for cell and molecular biology\| PubMed ID: 18702675	2008
An isoform of Arabidopsis myosin XI interacts with small GTPases in its C-terminal tail region. Journal of experimental botany\| PubMed ID: 18703495	2008
A putative peroxisomal polyamine oxidase, AtPAO4, is involved in polyamine catabolism in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 18703589	2008
NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana. The Plant cell\| PubMed ID: 18780803	2008
NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. The Plant cell\| PubMed ID: 18849494	2008
Proteomic identification and characterization of a novel peroxisomal adenine nucleotide transporter supplying ATP for fatty acid beta-oxidation in soybean and Arabidopsis. The Plant cell\| PubMed ID: 19073762	2008
Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission. The Plant journal : for cell and molecular biology\| PubMed ID: 19144001	2009
Constitutive and inducible ER bodies of Arabidopsis thaliana accumulate distinct beta-glucosidases. Plant & cell physiology\| PubMed ID: 19147648	2009
A vacuolar iron transporter in tulip, TgVit1, is responsible for blue coloration in petal cells through iron accumulation. The Plant journal : for cell and molecular biology\| PubMed ID: 19366427	2009
Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB. The Plant cell\| PubMed ID: 19454733	2009
Molecular components required for the targeting of PEX7 to peroxisomes in Arabidopsis thaliana. The Plant journal : for cell and molecular biology\| PubMed ID: 19594707	2009
Cytosolic heat shock protein 90 regulates heat shock transcription factor in Arabidopsis thaliana. Plant signaling & behavior\| PubMed ID: 19704818	2008
Seeing is believing: on the use of image databases for visually exploring plant organelle dynamics. Plant & cell physiology\| PubMed ID: 19755394	2009
Peroxisomes are required for in vivo nitric oxide accumulation in the cytosol following salinity stress of Arabidopsis plants. Plant physiology\| PubMed ID: 19783645	2009
A novel membrane fusion-mediated plant immunity against bacterial pathogens. Genes & development\| PubMed ID: 19833761	2009
The ER body, a new organelle in Arabidopsis thaliana, requires NAI2 for its formation and accumulates specific beta-glucosidases. Plant signaling & behavior\| PubMed ID: 19847124	2009
Suppression of peroxisome biogenesis factor 10 reduces cuticular wax accumulation by disrupting the ER network in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 19892830	2009
GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana. The Plant cell\| PubMed ID: 19933201	2009
Ectopic expression of an esterase, which is a candidate for the unidentified plant cutinase, causes cuticular defects in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 19996150	2010
Frontiers of research on organelle differentiation. Plant & cell physiology\| PubMed ID: 20008479	2009
A peroxisomal ABC transporter promotes seed germination by inducing pectin degradation under the control of ABI5. The Plant journal : for cell and molecular biology\| PubMed ID: 20345608	2010
Gateway binary vectors with the bialaphos resistance gene, bar, as a selection marker for plant transformation. Bioscience, biotechnology, and biochemistry\| PubMed ID: 20530878	2010
The Plant Organelles Database 2 (PODB2): an updated resource containing movie data of plant organelle dynamics. Plant & cell physiology\| PubMed ID: 21115470	2011
Arabidopsis Qa-SNARE SYP2 proteins localized to different subcellular regions function redundantly in vacuolar protein sorting and plant development. The Plant journal : for cell and molecular biology\| PubMed ID: 21143674	2010
Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes. The Plant cell\| PubMed ID: 21487094	2011
A monogalactosyldiacylglycerol synthase found in the green sulfur bacterium Chlorobaculum tepidum reveals important roles for galactolipids in photosynthesis. The Plant cell\| PubMed ID: 21764989	2011
A defect of peroxisomal membrane protein 38 causes enlargement of peroxisomes. Plant & cell physiology\| PubMed ID: 22034551	2011
Unique defense strategy by the endoplasmic reticulum body in plants. Plant & cell physiology\| PubMed ID: 22102697	2011
A possible involvement of autophagy in amyloplast degradation in columella cells during hydrotropic response of Arabidopsis roots. Planta\| PubMed ID: 22532286	2012
Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner. Plant & cell physiology\| PubMed ID: 22611176	2012
Adaxial-abaxial patterning: a novel function of the GABA shunt. Plant signaling & behavior\| PubMed ID: 22751326	2012
Tonoplast- and plasma membrane-localized aquaporin-family transporters in blue hydrangea sepals of aluminum hyperaccumulating plant. PloS one\| PubMed ID: 22952644	2012
Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes and thylakoid membranes during chloroplast biogenesis in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 22978702	2013
ERMO3/MVP1/GOLD36 is involved in a cell type-specific mechanism for maintaining ER morphology in Arabidopsis thaliana. PloS one\| PubMed ID: 23155454	2012
Identification of two novel endoplasmic reticulum body-specific integral membrane proteins. Plant physiology\| PubMed ID: 23166355	2013
Proteomic analysis reveals that the Rab GTPase RabE1c is involved in the degradation of the peroxisomal protein receptor PEX7 (peroxin 7). The Journal of biological chemistry\| PubMed ID: 23297417	2013
Spatiotemporal secretion of PEROXIDASE36 is required for seed coat mucilage extrusion in Arabidopsis. The Plant cell\| PubMed ID: 23572548	2013
The plastidic DEAD-box RNA helicase 22, HS3, is essential for plastid functions both in seed development and in seedling growth. Plant & cell physiology\| PubMed ID: 23803517	2013
Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. PLoS genetics\| PubMed ID: 23935517	2013
Myosin XI-i links the nuclear membrane to the cytoskeleton to control nuclear movement and shape in Arabidopsis. Current biology : CB\| PubMed ID: 23973298	2013
The Plant Organelles Database 3 (PODB3) update 2014: integrating electron micrographs and new options for plant organelle research. Plant & cell physiology\| PubMed ID: 24092884	2014
MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana. The Plant journal : for cell and molecular biology\| PubMed ID: 24118572	2013
MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis. The Plant cell\| PubMed ID: 24280388	2013
Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses. Plant physiology and biochemistry : PPB\| PubMed ID: 24342708	2014
Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis. The Plant cell\| PubMed ID: 24368788	2013
Organ-specific quality control of plant peroxisomes is mediated by autophagy. Journal of cell science\| PubMed ID: 24463818	2014
Chaperone and protease functions of LON protease 2 modulate the peroxisomal transition and degradation with autophagy. Plant & cell physiology\| PubMed ID: 24492254	2014
Novel proteins interacting with peroxisomal protein receptor PEX7 in Arabidopsis thaliana. Plant signaling & behavior\| PubMed ID: 24494243	2013
ER bodies in plants of the Brassicales order: biogenesis and association with innate immunity. Frontiers in plant science\| PubMed ID: 24653729	2014
Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality. Autophagy\| PubMed ID: 24732712	2014
Interaction between chaperone and protease functions of LON2, and autophagy during the functional transition of peroxisomes. Plant signaling & behavior\| PubMed ID: 24739336	2014
Diffuse decapping enzyme DCP2 accumulates in DCP1 foci under heat stress in Arabidopsis thaliana. Plant & cell physiology\| PubMed ID: 25339350	2015
Dynamics of the Light-Dependent Transition of Plant Peroxisomes. Plant & cell physiology\| PubMed ID: 26063394	2015
A new temperature-insensitive allele of the Arabidopsis AXR6/CUL1 locus derived from a missense mutation in the C-terminal RBX1 binding region. Plant signaling & behavior\| PubMed ID: 26339842	2015
Extension of oil biosynthesis during the mid-phase of seed development enhances oil content in Arabidopsis seeds. Plant biotechnology journal\| PubMed ID: 26503031	2016
Quantifying morphological features of actin cytoskeletal filaments in plant cells based on mathematical morphology. Journal of theoretical biology\| PubMed ID: 26551157	2016
Phosphorylation of the C Terminus of RHD3 Has a Critical Role in Homotypic ER Membrane Fusion in Arabidopsis. Plant physiology\| PubMed ID: 26684656	2016
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy\| PubMed ID: 26799652	2016
Hexose Oxidase-Mediated Hydrogen Peroxide as a Mechanism for the Antibacterial Activity in the Red Seaweed Ptilophora subcostata. PloS one\| PubMed ID: 26867214	2016
Physical interaction between peroxisomes and chloroplasts elucidated by in situ laser analysis. Nature plants\| PubMed ID: 27247035	2015
Sucrose Production Mediated by Lipid Metabolism Suppresses the Physical Interaction of Peroxisomes and Oil Bodies during Germination of Arabidopsis thaliana. The Journal of biological chemistry\| PubMed ID: 27466365	2016
Gateway Vectors for Simultaneous Detection of Multiple Protein-Protein Interactions in Plant Cells Using Bimolecular Fluorescence Complementation. PloS one\| PubMed ID: 27490375	2016
Grana-Localized Proteins, RIQ1 and RIQ2, Affect the Organization of Light-Harvesting Complex II and Grana Stacking in Arabidopsis. The Plant cell\| PubMed ID: 27600538	2016
PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana. The Plant journal : for cell and molecular biology\| PubMed ID: 27612205	2016
HSP90 Stabilizes Auxin-Responsive Phenotypes by Masking a Mutation in the Auxin Receptor TIR1. Plant & cell physiology\| PubMed ID: 27816945	2016