Itamar Simon

Dept. of Microbiology and Molecular Genetics, Hebrew University of Jerusalem

Affiliated withHebrew University of Jerusalem

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 6	2017

Other Publications

Article	Year
The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress. Molecular cell\| PubMed ID: 11931764	2002
Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (New York, N.Y.)\| PubMed ID: 12399584	2002
Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling. Cell\| PubMed ID: 12732146	2003
Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly. The EMBO journal\| PubMed ID: 12840001	2003
Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12934016	2003
Continuous representations of time-series gene expression data. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 12935332	2003
Deconvolving cell cycle expression data with complementary information. Bioinformatics (Oxford, England)\| PubMed ID: 15262777	2004
MILANO--custom annotation of microarray results using automatic literature searches. BMC bioinformatics\| PubMed ID: 15661078	2005
Combined static and dynamic analysis for determining the quality of time-series expression profiles. Nature biotechnology\| PubMed ID: 16333294	2005
Evidence for an instructive mechanism of de novo methylation in cancer cells. Nature genetics\| PubMed ID: 16444255	2006
An analysis of intra array repeats: the good, the bad and the non informative. BMC genomics\| PubMed ID: 16753054	2006
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer. Nature genetics\| PubMed ID: 17200670	2007
Reconstructing dynamic regulatory maps. Molecular systems biology\| PubMed ID: 17224918	2007
Tamoxifen induces heparanase expression in estrogen receptor-positive breast cancer. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 17634531	2007
Continuous hidden process model for time series expression experiments. Bioinformatics (Oxford, England)\| PubMed ID: 17646331	2007
Combined analysis reveals a core set of cycling genes. Genome biology\| PubMed ID: 17650318	2007
Molecular characteristics of liver metastases from uveal melanoma. Investigative ophthalmology & visual science\| PubMed ID: 17962435	2007
Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18195366	2008
Global organization of replication time zones of the mouse genome. Genome research\| PubMed ID: 18669478	2008
A probabilistic generative model for GO enrichment analysis. Nucleic acids research\| PubMed ID: 18676451	2008
Chromatin immunoprecipitation-on-chip reveals stress-dependent p53 occupancy in primary normal cells but not in established cell lines. Cancer research\| PubMed ID: 19047144	2008
Developmental programming of CpG island methylation profiles in the human genome. Nature structural & molecular biology\| PubMed ID: 19377480	2009
Backup in gene regulatory networks explains differences between binding and knockout results. Molecular systems biology\| PubMed ID: 19536199	2009
A combined expression-interaction model for inferring the temporal activity of transcription factors. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 19630541	2009
Genome-wide analysis of the replication program in mammals. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology\| PubMed ID: 20205353	2010
Integrating multiple evidence sources to predict transcription factor binding in the human genome. Genome research\| PubMed ID: 20219943	2010
Modulation of the vitamin D3 response by cancer-associated mutant p53. Cancer cell\| PubMed ID: 20227041	2010
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture. PLoS genetics\| PubMed ID: 20617169	2010
Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes. BMC genomics\| PubMed ID: 20716365	2010
DNA methylation and gene expression. Wiley interdisciplinary reviews. Systems biology and medicine\| PubMed ID: 20836034	2010
DECOD: fast and accurate discriminative DNA motif finding. Bioinformatics (Oxford, England)\| PubMed ID: 21752801	2011
Competition between small RNAs: a quantitative view. Biophysical journal\| PubMed ID: 22768926	2012
Studying and modelling dynamic biological processes using time-series gene expression data. Nature reviews. Genetics\| PubMed ID: 22805708	2012
Genome-wide analysis of androgen receptor targets reveals COUP-TF1 as a novel player in human prostate cancer. PloS one\| PubMed ID: 23056316	2012
Systematic determination of replication activity type highlights interconnections between replication, chromatin structure and nuclear localization. PloS one\| PubMed ID: 23145042	2012
Integrative analysis of methylome and transcriptome reveals the importance of unmethylated CpGs in non-CpG island gene activation. BioMed research international\| PubMed ID: 23936848	2013
Lineage correlations of single cell division time as a probe of cell-cycle dynamics. Nature\| PubMed ID: 25762143	2015
The p53 C terminus controls site-specific DNA binding and promotes structural changes within the central DNA binding domain. Molecular cell\| PubMed ID: 25794615	2015
Distinguishing between stochasticity and determinism: Examples from cell cycle duration variability. BioEssays : news and reviews in molecular, cellular and developmental biology\| PubMed ID: 26628302	2016
The mutation spectrum in genomic late replication domains shapes mammalian GC content. Nucleic acids research\| PubMed ID: 27085808	2016
Persistence to anti-cancer treatments in the stationary to proliferating transition. Cell cycle (Georgetown, Tex.)\| PubMed ID: 27801609	2016