Tomoki Chiba

Graduate School of Life and Environmental Sciences, university of tsukuba

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 6	2017

Other Publications

Article	Year
Antagonistic regulation of myogenesis by two deubiquitinating enzymes, UBP45 and UBP69. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12107281	2002
Two distinct pathways mediated by PA28 and hsp90 in major histocompatibility complex class I antigen processing. The Journal of experimental medicine\| PubMed ID: 12119343	2002
E3 ubiquitin ligase that recognizes sugar chains. Nature\| PubMed ID: 12140560	2002
Conditional knockdown of proteasomes results in cell-cycle arrest and enhanced expression of molecular chaperones Hsp70 and Hsp40 in chicken DT40 cells. The Journal of biological chemistry\| PubMed ID: 12594202	2003
CHIP: a quality-control E3 ligase collaborating with molecular chaperones. The international journal of biochemistry & cell biology\| PubMed ID: 12672450	2003
A palmitoylated RING finger ubiquitin ligase and its homologue in the brain membranes. Journal of neurochemistry\| PubMed ID: 12859687	2003
Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains. The Journal of biological chemistry\| PubMed ID: 12939278	2003
Proteasome activator PA28gamma-dependent nuclear retention and degradation of hepatitis C virus core protein. Journal of virology\| PubMed ID: 12970408	2003
The fusion oncoprotein PML-RARalpha induces endoplasmic reticulum (ER)-associated degradation of N-CoR and ER stress. The Journal of biological chemistry\| PubMed ID: 14701861	2004
Structural basis of sugar-recognizing ubiquitin ligase. Nature structural & molecular biology\| PubMed ID: 14990996	2004
A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier. The EMBO journal\| PubMed ID: 15071506	2004
Cullin-based ubiquitin ligase and its control by NEDD8-conjugating system. Current protein & peptide science\| PubMed ID: 15180522	2004
Ubiquitin-fusion degradation pathway plays an indispensable role in naked DNA vaccination with a chimeric gene encoding a syngeneic cytotoxic T lymphocyte epitope of melanocyte and green flu... Immunology\| PubMed ID: 15270727	2004
Oxidative stress sensor Keap1 functions as an adaptor for Cul3-based E3 ligase to regulate proteasomal degradation of Nrf2. Molecular and cellular biology\| PubMed ID: 15282312	2004
Expression of HIV-1 accessory protein Vif is controlled uniquely to be low and optimal by proteasome degradation. Microbes and infection\| PubMed ID: 15374000	2004
Ligand-dependent switching of ubiquitin-proteasome pathways for estrogen receptor. The EMBO journal\| PubMed ID: 15538384	2004
Regulation of anaphylactic responses by phosphatidylinositol phosphate kinase type I {alpha}. The Journal of experimental medicine\| PubMed ID: 15767368	2005
DDB2, the xeroderma pigmentosum group E gene product, is directly ubiquitylated by Cullin 4A-based ubiquitin ligase complex. DNA repair\| PubMed ID: 15811626	2005
Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice. The Journal of cell biology\| PubMed ID: 15866887	2005
Common anti-apoptotic roles of parkin and alpha-synuclein in human dopaminergic cells. Biochemical and biophysical research communications\| PubMed ID: 15896322	2005
Differential expression regulation of the alpha and beta subunits of the PA28 proteasome activator in mature dendritic cells. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 15944286	2005
Multiple roles of Rbx1 in the VBC-Cul2 ubiquitin ligase complex. Genes to cells : devoted to molecular & cellular mechanisms\| PubMed ID: 15966899	2005
[Biology of the reversible protein ubiquitination]. Seikagaku. The Journal of Japanese Biochemical Society\| PubMed ID: 16022430	2005
14-3-3eta is a novel regulator of parkin ubiquitin ligase. The EMBO journal\| PubMed ID: 16096643	2006
In vitro systems for NEDD8 conjugation by Ubc12. Methods in enzymology\| PubMed ID: 16275320	2005
Excess peroxisomes are degraded by autophagic machinery in mammals. The Journal of biological chemistry\| PubMed ID: 16332691	2006
[Regulation of the protein degradation pathway by the ubiquitin family: its implication in neurodegenerative diseases]. Rinsho shinkeigaku = Clinical neurology\| PubMed ID: 16447778	2005
The involvement of immunoproteasomes in induction of MHC class I-restricted immunity targeting Toxoplasma SAG1. Microbes and infection\| PubMed ID: 16515877	2006
BTB domain-containing speckle-type POZ protein (SPOP) serves as an adaptor of Daxx for ubiquitination by Cul3-based ubiquitin ligase. The Journal of biological chemistry\| PubMed ID: 16524876	2006
The ubiquitin-proteasome system plays essential roles in presenting an 8-mer CTL epitope expressed in APC to corresponding CD8+ T cells. International immunology\| PubMed ID: 16569681	2006
Depletion of hsp90beta induces multiple defects in B cell receptor signaling. The Journal of biological chemistry\| PubMed ID: 16617057	2006
Loss of autophagy in the central nervous system causes neurodegeneration in mice. Nature\| PubMed ID: 16625205	2006
Analysis of knock-out mice to determine the role of HPC-1/syntaxin 1A in expressing synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 16723534	2006
[NEDD8 conjugation system]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme\| PubMed ID: 16922375	2006
[Physiological role in constitutive autophagy]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme\| PubMed ID: 16922430	2006
Decline of striatal dopamine release in parkin-deficient mice shown by ex vivo autoradiography. Journal of neuroscience research\| PubMed ID: 16941649	2006
SUMO-specific protease SUSP4 positively regulates p53 by promoting Mdm2 self-ubiquitination. Nature cell biology\| PubMed ID: 17086174	2006
Isolation and characterization of phage-displayed single chain antibodies recognizing nonreducing terminal mannose residues. 1. A new strategy for generation of anti-carbohydrate antibodies. Biochemistry\| PubMed ID: 17198396	2007
Direct interactions between NEDD8 and ubiquitin E2 conjugating enzymes upregulate cullin-based E3 ligase activity. Nature structural & molecular biology\| PubMed ID: 17206147	2007
TBP-interacting protein 120B (TIP120B)/cullin-associated and neddylation-dissociated 2 (CAND2) inhibits SCF-dependent ubiquitination of myogenin and accelerates myogenic differentiation. The Journal of biological chemistry\| PubMed ID: 17242400	2007
Dioxin receptor is a ligand-dependent E3 ubiquitin ligase. Nature\| PubMed ID: 17392787	2007
SCRAPPER-dependent ubiquitination of active zone protein RIM1 regulates synaptic vesicle release. Cell\| PubMed ID: 17803915	2007
Muscle RING-finger protein-1 (MuRF1) as a connector of muscle energy metabolism and protein synthesis. Journal of molecular biology\| PubMed ID: 18222470	2008
Allele-selective effect of PA28 in MHC class I antigen processing. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 18641301	2008
A new ubiquitin ligase involved in p57KIP2 proteolysis regulates osteoblast cell differentiation. EMBO reports\| PubMed ID: 18660753	2008
Hsp90-mediated assembly of the 26 S proteasome is involved in major histocompatibility complex class I antigen processing. The Journal of biological chemistry\| PubMed ID: 18703510	2008
PML activates transcription by protecting HIPK2 and p300 from SCFFbx3-mediated degradation. Molecular and cellular biology\| PubMed ID: 18809579	2008
The mechanism of poly-NEDD8 chain formation in vitro. Biochemical and biophysical research communications\| PubMed ID: 19245792	2009
Induction of Th1-biased cytokine production by alpha-carba-GalCer, a neoglycolipid ligand for NKT cells. International immunology\| PubMed ID: 20181652	2010
Bioluminescence assay for detecting cell surface membrane protein expression. Assay and drug development technologies\| PubMed ID: 20836709	2011
[Recognition of CD1d/glycolipid antigen complex by NKT cells and mechanisms in immune regulation]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme\| PubMed ID: 21089371	2008
Interplay of transcription factors in T-cell differentiation and function: the role of Runx. Immunology\| PubMed ID: 21091910	2011
PA28 and the proteasome immunosubunits play a central and independent role in the production of MHC class I-binding peptides in vivo. European journal of immunology\| PubMed ID: 21360704	2011
Ubiquitin ligase activity of Cul3-KLHL7 protein is attenuated by autosomal dominant retinitis pigmentosa causative mutation. The Journal of biological chemistry\| PubMed ID: 21828050	2011
Cell activation by CpG ODN leads to improved electrofusion in hybridoma production. Journal of immunological methods\| PubMed ID: 21878337	2011
IκBL, a novel member of the nuclear IκB family, inhibits inflammatory cytokine expression. FEBS letters\| PubMed ID: 22024480	2011
Smad7-deficient mice show growth retardation with reduced viability. Journal of biochemistry\| PubMed ID: 22383537	2012
Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy\| PubMed ID: 22966490	2012
A method for inducing antigen-specific IgG production by in vitro immunization. Journal of immunological methods\| PubMed ID: 22974834	2012
Reciprocal control of G1-phase progression is required for Th-POK/Runx3-mediated CD4/8 thymocyte cell fate decision. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 23018457	2012
Spermatogenesis arrest caused by conditional deletion of Hsp90α in adult mice. Biology open\| PubMed ID: 23213375	2012
Reduction of immunocompetent T cells followed by prolonged lymphopenia in severe sepsis in the elderly. Critical care medicine\| PubMed ID: 23328259	2013
Sepsis-induced hypercytokinemia and lymphocyte apoptosis in aging-accelerated Klotho knockout mice. Shock (Augusta, Ga.)\| PubMed ID: 23364432	2013
Brap2 regulates temporal control of NF-κB localization mediated by inflammatory response. PloS one\| PubMed ID: 23554956	2013
Acetylation-mediated proteasomal degradation of core histones during DNA repair and spermatogenesis. Cell\| PubMed ID: 23706739	2013
Myeloma overexpressed 2 (Myeov2) regulates L11 subnuclear localization through Nedd8 modification. PloS one\| PubMed ID: 23776465	2013
Transcription activator-like effector nuclease-mediated transduction of exogenous gene into IL2RG locus. Scientific reports\| PubMed ID: 24853770	2014
Role of nuclear IκBs in inflammation regulation. Biomolecular concepts\| PubMed ID: 25436575	2013
TALEN-Mediated Gene Disruption on Y Chromosome Reveals Critical Role of EIF2S3Y in Mouse Spermatogenesis. Stem cells and development\| PubMed ID: 25579647	2015
CACUL1/CAC1 Regulates the Antioxidant Response by Stabilizing Nrf2. Scientific reports\| PubMed ID: 26238671	2015
KIAA0368-deficiency affects disassembly of 26S proteasome under oxidative stress condition. Journal of biochemistry\| PubMed ID: 26802743	2016
Proteasome activators, PA28γ and PA200, play indispensable roles in male fertility. Scientific reports\| PubMed ID: 27003159	2016
SCFFbl12 Increases p21Waf1/Cip1 Expression Level through Atypical Ubiquitin Chain Synthesis. Molecular and cellular biology\| PubMed ID: 27215384	2016
USP15 stabilizes the transcription factor Nrf1 in the nucleus, promoting the proteasome gene expression. Biochemical and biophysical research communications\| PubMed ID: 27416755	2016
CACUL1/CAC1 attenuates p53 activity through PML post-translational modification. Biochemical and biophysical research communications\| PubMed ID: 27889610	2017
Structural Changes in Molluscan Community over a 15-Year Period before and after the 2011 Great East Japan Earthquake and Subsequent Tsunami around Matsushima Bay, Miyagi Prefecture, Northea... PloS one\| PubMed ID: 27936182	2016
Complementary Critical Functions of Zfy1 and Zfy2 in Mouse Spermatogenesis and Reproduction. PLoS genetics\| PubMed ID: 28114340	2017