Souvik Ghosh

Computational and Systems Biology, University of Basel

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 9	2017

Other Publications

Article	Year
Full genomic analysis of a G8P[1] rotavirus strain isolated from an asymptomatic infant in Kenya provides evidence for an artiodactyl-to-human interspecies transmission event. Journal of medical virology\| PubMed ID: 21181935	2011
An unusual presentation of tuberculous lymphadenitis. Journal of the Indian Medical Association\| PubMed ID: 15887842	2004
Characterization of VP1, VP2 and VP3 gene segments of a human rotavirus closely related to porcine strains. Virus genes\| PubMed ID: 16732476	2006
A survey of the knowledge, attitude and practice of adverse drug reaction reporting by clinicians in eastern India. Drug safety\| PubMed ID: 16808556	2006
Evidence for bovine origin of VP4 and VP7 genes of human group A rotavirus G6P[14] and G10P[14] strains. Journal of clinical microbiology\| PubMed ID: 17537935	2007
Molecular characterization of rare bovine group A rotavirus G15P[11] and G15P[21] strains from eastern India: identification of simian SA11-like VP6 genes in G15P[21] strains. Virus genes\| PubMed ID: 18679786	2008
The post-tsunami outbreak of diarrhoeal diseases in Car Nicobar Island, India, was caused by human group A rotavirus G2 strains. The Journal of infection\| PubMed ID: 18723226	2008
Increase in prevalence of human group A rotavirus G9 strains as an important VP7 genotype among children in eastern India. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology\| PubMed ID: 18755625	2008
Full genomic analysis of a human group A rotavirus G9P[6] strain from Eastern India provides evidence for porcine-to-human interspecies transmission. Archives of virology\| PubMed ID: 19333549	2009
Micro-albuminuria: a predictor of short-term mortality in acute ischaemic stroke. Journal of the Indian Medical Association\| PubMed ID: 19370948	2008
Prevalence of respiratory syncytial virus group B genotype BA-IV strains among children with acute respiratory tract infection in Kolkata, Eastern India. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology\| PubMed ID: 19570709	2009
Detection of group B rotavirus in an adult with acute gastroenteritis in Yangon, Myanmar. Journal of medical virology\| PubMed ID: 19774684	2009
Molecular characterization of the VP1, VP2, VP4, VP6, NSP1 and NSP2 genes of bovine group B rotaviruses: identification of a novel VP4 genotype. Archives of virology\| PubMed ID: 19936611	2010
Analysis of genetic diversity and molecular evolution of human group B rotaviruses based on whole genome segments. The Journal of general virology\| PubMed ID: 20200192	2010
Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China. Journal of medical virology\| PubMed ID: 20419827	2010
Identification of P[8]b subtype in OP354-like human rotavirus strains by a modified RT-PCR method. Japanese journal of infectious diseases\| PubMed ID: 20495277	2010
Complete genome constellation of a caprine group A rotavirus strain reveals common evolution with ruminant and human rotavirus strains. The Journal of general virology\| PubMed ID: 20505013	2010
Identification of staphylocoagulase genotypes I-X and discrimination of type IV and V subtypes by multiplex PCR assay for clinical isolates of Staphylococcus aureus. Japanese journal of infectious diseases\| PubMed ID: 20657065	2010
Full genomic analysis of a simian SA11-like G3P[2] rotavirus strain isolated from an asymptomatic infant: identification of novel VP1, VP6 and NSP4 genotypes. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 21035567	2011
Whole-genome characterization of human group C rotaviruses: identification of two lineages in the VP3 gene. The Journal of general virology\| PubMed ID: 21048036	2011
Full genomic analyses of two human G2P[4] rotavirus strains detected in 2005: identification of a caprine-like VP3 gene. The Journal of general virology\| PubMed ID: 21270285	2011
Phylogenetic analysis of human rotavirus in Myanmar: detection of Indian-Bangladeshi G1/G2 lineages, Chinese G3 lineage and OP354-like P[8] lineage (P[8]b subtype). The Southeast Asian journal of tropical medicine and public health\| PubMed ID: 21329316	2010
Genogroup I picobirnavirus in diarrhoeic foals: can the horse serve as a natural reservoir for human infection? Veterinary research\| PubMed ID: 21414192	2011
Detection and molecular characterization of multiple strains of Picobirnavirus causing mixed infection in a diarrhoeic child: Emergence of prototype Genogroup II-like strain in Kolkata, Indi... International journal of molecular epidemiology and genetics\| PubMed ID: 21537403	2011
Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan G2P[4] human rotavirus strains. The Journal of general virology\| PubMed ID: 21613446	2011
Full genomic analyses of human rotavirus strains possessing the rare P[8]b VP4 subtype. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 21640848	2011
Detection and full genomic analysis of G6P[9] human rotavirus in Japan. Virus genes\| PubMed ID: 21656185	2011
Micro-albuminuria: a predictor of 7-day mortality in acute myocardial infarction. Journal of the Indian Medical Association\| PubMed ID: 21661457	2010
Tongue hyperpigmentation resulting from peginterferon alfa-2b and ribavirin treatment in a patient with chronic hepatitis C. Digestive diseases and sciences\| PubMed ID: 21948358	2012
Whole-genomic analysis of rotavirus strains: current status and future prospects. Future microbiology\| PubMed ID: 21958144	2011
Prevalence of human rotavirus genotypes in Wuhan, China, during 2008-2011: changing trend of predominant genotypes and emergence of strains with the P[8]b subtype of the VP4 gene. Archives of virology\| PubMed ID: 21986895	2011
Detection of human G10 rotavirus strains with similarity to bovine and bovine-like equine strains from untypable samples. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 22155585	2011
Whole genomic analysis reveals the porcine origin of human G9P[19] rotavirus strains Mc323 and Mc345. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 22226701	2012
Noradrenaline vs. terlipressin in the treatment of hepatorenal syndrome: a randomized study. Journal of hepatology\| PubMed ID: 22322237	2012
Evidence for the porcine origin of equine rotavirus strain H-1. Veterinary microbiology\| PubMed ID: 22437009	2012
Whole-genomic analysis of a human G1P[9] rotavirus strain reveals intergenogroup-reassortment events. The Journal of general virology\| PubMed ID: 22592265	2012
PCR-based detection of Leishmania DNA in skin samples of post kala-azar dermal leishmaniasis patients from an endemic area of Bangladesh. Japanese journal of infectious diseases\| PubMed ID: 22814154	2012
Molecular epidemiology of noroviruses in children and adults with acute gastroenteritis in Wuhan, China, 2007-2010. Archives of virology\| PubMed ID: 22886184	2012
Whole genomic analysis of human G1P[8] rotavirus strains from different age groups in China. Viruses\| PubMed ID: 23012626	2012
The origin of two rare human P[10] rotavirus strains. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 23178318	2013
Whole genomic analyses of asymptomatic human G1P[6], G2P[6] and G3P[6] rotavirus strains reveal intergenogroup reassortment events and genome segments of artiodactyl origin. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 23347969	2013
Complex evolutionary patterns of two rare human G3P[9] rotavirus strains possessing a feline/canine-like H6 genotype on an AU-1-like genotype constellation. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 23403096	2013
Characterization of Enterococcus faecium with macrolide resistance and reduced susceptibility to quinupristin/dalfopristin in a Japanese hospital: detection of extensive diversity in erm(B)-... Microbial drug resistance (Larchmont, N.Y.)\| PubMed ID: 23442208	2013
Detection of Chlamydia trachomatis by immunological and genetic methods in female sex workers and the local female population of reproductive age in Mymensingh, Bangladesh. Japanese journal of infectious diseases\| PubMed ID: 23698492	2013
Whole genomic analyses of equine group A rotaviruses from Japan: evidence for bovine-to-equine interspecies transmission and reassortment events. Veterinary microbiology\| PubMed ID: 23938116	2013
Genetic diversity of emerging Panton-Valentine leukocidine/arginine catabolic mobile element (ACME)-positive ST8 SCCmec-IVa meticillin-resistant Staphylococcus aureus (MRSA) strains and ACME... Journal of medical microbiology\| PubMed ID: 23946478	2013
Prevalence and genetic diversity of arginine catabolic mobile element (ACME) in clinical isolates of coagulase-negative staphylococci: identification of ACME type I variants in Staphylococcu... Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 24113082	2013
Detection and genetic characterization of PVL-positive ST8-MRSA-IVa and exfoliative toxin D-positive European CA-MRSA-Like ST1931 (CC80) MRSA-IVa strains in Bangladesh. Microbial drug resistance (Larchmont, N.Y.)\| PubMed ID: 24552553	2014
Fabrication of electrically conductive metal patterns at the surface of polymer films by microplasma-based direct writing. ACS applied materials & interfaces\| PubMed ID: 24556018	2014
Molecular epidemiology and genetic evolution of the whole genome of G3P[8] human rotavirus in Wuhan, China, from 2000 through 2013. PloS one\| PubMed ID: 24676363	2014
Molecular analysis of non structural rotavirus group A enterotoxin gene of bovine origin from India. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 24747605	2014
Serotype distribution and susceptibility to penicillin and erythromycin among noninvasive or colonization isolates of Streptococcus pneumoniae in northern Japan: a cross-sectional study in t... Microbial drug resistance (Larchmont, N.Y.)\| PubMed ID: 24766085	2014
Hospital based surveillance and genetic characterization of rotavirus strains in children (<5 years) with acute gastroenteritis in Kolkata, India, revealed resurgence of G9 and G2 genotypes ... Vaccine\| PubMed ID: 25091674	2014
Drug resistance and molecular epidemiology of aerobic bacteria isolated from puerperal infections in Bangladesh. Microbial drug resistance (Larchmont, N.Y.)\| PubMed ID: 25555043	2015
Polysome arrest restricts miRNA turnover by preventing exosomal export of miRNA in growth-retarded mammalian cells. Molecular biology of the cell\| PubMed ID: 25609084	2015
Exotic rotaviruses in animals and rotaviruses in exotic animals. Virusdisease\| PubMed ID: 25674582	2014
Genomic characterization of G3P[6], G4P[6] and G4P[8] human rotaviruses from Wuhan, China: Evidence for interspecies transmission and reassortment events. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 25891280	2015
Detection and genotyping of Leptospira spp. from the kidneys of a seemingly healthy pig slaughtered for human consumption. Journal of infection in developing countries\| PubMed ID: 25989174	2015
Analysis of codon usage pattern evolution in avian rotaviruses and their preferred host. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 26086995	2015
Rickettsia felis Infection among Humans, Bangladesh, 2012-2013. Emerging infectious diseases\| PubMed ID: 26196587	2015
Whole genomic analysis of a porcine G6P[13] rotavirus strain. Veterinary microbiology\| PubMed ID: 26454565	2015
Molecular Detection of Rickettsia felis in Humans, Cats, and Cat Fleas in Bangladesh, 2013-2014. Vector borne and zoonotic diseases (Larchmont, N.Y.)\| PubMed ID: 26901499	2016
Multispecies reassortant bovine rotavirus strain carries a novel simian G3-like VP7 genotype. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 27033751	2016
A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation. Genome research\| PubMed ID: 27382025	2016
Reversible HuR-microRNA binding controls extracellular export of miR-122 and augments stress response. EMBO reports\| PubMed ID: 27402548	2016
Whole genomic analysis of G2P[4] human Rotaviruses in Mymensingh, north-central Bangladesh. Heliyon\| PubMed ID: 27722206	2016
Distribution of two distinct rotavirus B (RVB) strains in the north-central Bangladesh and evidence for reassortment event among human RVB revealed by whole genomic analysis. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 27825911	2017
Whole genome analysis provides evidence for porcine-to-simian interspecies transmission of rotavirus-A. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 28039076	2017
Detection of picobirnaviruses in vervet monkeys (Chlorocebus sabaeus): Molecular characterization of complete genomic segment-2. Virus research\| PubMed ID: 28057480	2017
Analysis of porcine rotavirus A enterotoxin gene for structure-function relationship. Journal of veterinary science\| PubMed ID: 28057906	2017
Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay. KDD : proceedings. International Conference on Knowledge Discovery & Data Mining\| PubMed ID: 28203486	2016
TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition. Biology direct\| PubMed ID: 28412966	2017
Tuning Optical Signatures of Single- and Few-Layer MoS2 by Blown-Bubble Bulge Straining up to Fracture. Nano letters\| PubMed ID: 28628325	2017
Unexpected detection of porcine rotavirus C strains carrying human origin VP6 gene. The Veterinary quarterly\| PubMed ID: 28643555	2017
Polymer Pen Lithography with Lipids for Large-Area Gradient Patterns. Langmuir : the ACS journal of surfaces and colloids\| PubMed ID: 28650173	2017
Molecular characterization of complete genomic segment-2 of picobirnavirus strains detected in a cat and a dog. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 28688978	2017
Molecular characterization of canine parvovirus and canine enteric coronavirus in diarrheic dogs on the island of St. Kitts: First report from the Caribbean region. Virus research\| PubMed ID: 28847699	2017
Therapeutics and Immunoprophylaxis against Noroviruses and Rotaviruses. Current drug metabolism\| PubMed ID: 28901254	2017