Fengfeng Zhou

College of Computer Science and Technology, Jilin University

Affiliated withJilin University Jilin University

Research Area

Biography

Fengfeng Zhou has not added Biography.
If you are Fengfeng Zhou and would like to personalize this page please email our Author Liaison for assistance.

JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 9	2018
Publication title	2024

Other Publications

Article	Year
De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinformatics (Oxford, England)\| PubMed ID: 19744996	2009
cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Bioinformatics (Oxford, England)\| PubMed ID: 20538725	2010
QServer: a biclustering server for prediction and assessment of co-expressed gene clusters. PloS one\| PubMed ID: 22403692	2012
Normalizing electrocardiograms of both healthy persons and cardiovascular disease patients for biometric authentication. PloS one\| PubMed ID: 23977063	2013
Gene expression profile based classification models of psoriasis. Genomics\| PubMed ID: 24239985	2014
A novel molecular typing method of Mycobacteria based on DNA barcoding visualization. Journal of clinical bioinformatics\| PubMed ID: 24555538	2014
Genome-wide screening of pathogenicity islands in Mycobacterium tuberculosis based on the genomic barcode visualization. Molecular biology reports\| PubMed ID: 25108673	2014
A novel electrocardiogram parameterization algorithm and its application in myocardial infarction detection. Computers in biology and medicine\| PubMed ID: 25201457	2015
Personalized clinical data screening: Special issue on health informatics. Computers in biology and medicine\| PubMed ID: 25921697	2015
McTwo: a two-step feature selection algorithm based on maximal information coefficient. BMC bioinformatics\| PubMed ID: 27006077	2016
A Comprehensive Curation Shows the Dynamic Evolutionary Patterns of Prokaryotic CRISPRs. BioMed research international\| PubMed ID: 27195295	2016
CD3D and PRKCQ work together to discriminate between B-cell and T-cell acute lymphoblastic leukemia. Computers in biology and medicine\| PubMed ID: 27494091	2016
CRISPRdigger: detecting CRISPRs with better direct repeat annotations. Scientific reports\| PubMed ID: 27596864	2016
Rectified-Linear-Unit-Based Deep Learning for Biomedical Multi-label Data. Interdisciplinary sciences, computational life sciences\| PubMed ID: 27837428	2017
Gly-PseAAC: Identifying protein lysine glycation through sequences. Gene\| PubMed ID: 27845204	2017
Machine learning based detection of age-related macular degeneration (AMD) and diabetic macular edema (DME) from optical coherence tomography (OCT) images. Biomedical optics express\| PubMed ID: 28018716	2016
Multiple similarly-well solutions exist for biomedical feature selection and classification problems. Scientific reports\| PubMed ID: 28993656	2017
RIFS: a randomly restarted incremental feature selection algorithm. Scientific reports\| PubMed ID: 29026108	2017
Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group. The American journal of psychiatry\| PubMed ID: 29145754	2018
Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways. Scientific reports\| PubMed ID: 29321535	2018
Author Correction: Multiple similarly effective solutions exist for biomedical feature selection and classification problems. Scientific reports\| PubMed ID: 29323245	2018
An OMIC biomarker detection algorithm TriVote and its application in methylomic biomarker detection. Epigenomics\| PubMed ID: 29347830	2018
Proteomic biomarkers for lung cancer progression. Biomarkers in medicine\| PubMed ID: 29424557	2018
Publisher Correction: Multiple similarly effective solutions exist for biomedical feature selection and classification problems. Scientific reports\| PubMed ID: 29511231	2018
Gender specificity improves the early-stage detection of clear cell renal cell carcinoma based on methylomic biomarkers. Biomarkers in medicine\| PubMed ID: 29707986	2018
Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals. Sensors (Basel, Switzerland)\| PubMed ID: 29710763	2018
Author Correction: Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways. Scientific reports\| PubMed ID: 29875368	2018
TriZ-a rotation-tolerant image feature and its application in endoscope-based disease diagnosis. Computers in biology and medicine\| PubMed ID: 29936284	2018
Author Correction: Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Nature communications\| PubMed ID: 34880244	2021
Computational prediction and experimental validation of novel markers for detection of STEC O157:H7. World journal of gastroenterology\| PubMed ID: 21528067	2011
MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs). Journal of integrative bioinformatics\| PubMed ID: 28796642	2017
Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles. International journal of biological sciences\| PubMed ID: 29989064	2018
pyHIVE, a health-related image visualization and engineering system using Python. BMC bioinformatics\| PubMed ID: 30477418	2018
An accurate regression of developmental stages for breast cancer based on transcriptomic biomarkers. Biomarkers in medicine\| PubMed ID: 30484698	2019
Using Machine Learning to Measure Relatedness Between Genes: A Multi-Features Model. Scientific reports\| PubMed ID: 30862804	2019
Age Is Important for the Early-Stage Detection of Breast Cancer on Both Transcriptomic and Methylomic Biomarkers. Frontiers in genetics\| PubMed ID: 30984234	2019
Detecting Methylomic Biomarkers of Pediatric Autism in the Peripheral Blood Leukocytes. Interdisciplinary sciences, computational life sciences\| PubMed ID: 30993567	2019
Diagnosis of Breast Hyperplasia and Evaluation of RuXian-I Based on Metabolomics Deep Belief Networks. International journal of molecular sciences\| PubMed ID: 31141969	2019
sefOri: selecting the best-engineered sequence features to predict DNA replication origins. Bioinformatics (Oxford, England)\| PubMed ID: 31218360	2020
Feature selection may improve deep neural networks for the bioinformatics problems. Bioinformatics (Oxford, England)\| PubMed ID: 31591638	2020
BioDog, biomarker detection for improving identification power of breast cancer histologic grade in methylomics. Epigenomics\| PubMed ID: 31625763	2019
Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Nature communications\| PubMed ID: 31673008	2019
Epigenetic profiles capturing breast cancer stemness for triple negative breast cancer control. Epigenomics\| PubMed ID: 31729259	2019
AgeGuess, a Methylomic Prediction Model for Human Ages. Frontiers in bioengineering and biotechnology\| PubMed ID: 32211384	2020
Dimension Reduction and Clustering Models for Single-Cell RNA Sequencing Data: A Comparative Study. International journal of molecular sciences\| PubMed ID: 32235704	2020
Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid Arthritis. Frontiers in genetics\| PubMed ID: 32292416	2020
Selection of features for patient-independent detection of seizure events using scalp EEG signals. Computers in biology and medicine\| PubMed ID: 32339116	2020
Surgical resection of primary tumor is associated with prolonged survival in low-grade pancreatic neuroendocrine tumors. Clinics and research in hepatology and gastroenterology\| PubMed ID: 32386797	2021
Detection and Independent Validation of Model-Based Quantitative Transcriptional Regulation Relationships Altered in Lung Cancers. Frontiers in bioengineering and biotechnology\| PubMed ID: 32656193	2020
Application of Bayesian phylogenetic inference modelling for evolutionary genetic analysis and dynamic changes in 2019-nCoV. Briefings in bioinformatics\| PubMed ID: 32743639	2021
Severity Detection for the Coronavirus Disease 2019 (COVID-19) Patients Using a Machine Learning Model Based on the Blood and Urine Tests. Frontiers in cell and developmental biology\| PubMed ID: 32850809	2020
COVID19XrayNet: A Two-Step Transfer Learning Model for the COVID-19 Detecting Problem Based on a Limited Number of Chest X-Ray Images. Interdisciplinary sciences, computational life sciences\| PubMed ID: 32959234	2020
FeSTwo, a two-step feature selection algorithm based on feature engineering and sampling for the chronological age regression problem. Computers in biology and medicine\| PubMed ID: 33035960	2020
A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear. Briefings in bioinformatics\| PubMed ID: 33048108	2021
Reduced Serum Zinc Ion Concentration Is Associated with Coronary Heart Disease. Biological trace element research\| PubMed ID: 33387273	2021
A Machine Learning-Based Investigation of Gender-Specific Prognosis of Lung Cancers. Medicina (Kaunas, Lithuania)\| PubMed ID: 33499377	2021
A dynamic recursive feature elimination framework (dRFE) to further refine a set of OMIC biomarkers. Bioinformatics (Oxford, England)\| PubMed ID: 33515240	2021
Finding branched pathways in metabolic network via atom group tracking. PLoS computational biology\| PubMed ID: 33529200	2021
Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma. Diagnostics (Basel, Switzerland)\| PubMed ID: 33669819	2021
A Novel Position-Specific Encoding Algorithm (SeqPose) of Nucleotide Sequences and Its Application for Detecting Enhancers. International journal of molecular sciences\| PubMed ID: 33802922	2021
RIFS2D: A two-dimensional version of a randomly restarted incremental feature selection algorithm with an application for detecting low-ranked biomarkers. Computers in biology and medicine\| PubMed ID: 33930763	2021
Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data. Journal of bioinformatics and computational biology\| PubMed ID: 33971798	2021
EnRank: An Ensemble Method to Detect Pulmonary Hypertension Biomarkers Based on Feature Selection and Machine Learning Models. Frontiers in genetics\| PubMed ID: 33986767	2021
XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties. Journal of chemical information and modeling\| PubMed ID: 34009965	2021
Computational pan-cancer characterization of model-based quantitative transcription regulations dysregulated in regional lymph node metastasis. Computers in biology and medicine\| PubMed ID: 34166881	2021
DiaMole: Mole Detection and Segmentation Software for Mobile Phone Skin Images. Journal of healthcare engineering\| PubMed ID: 34188791	2021
Proactive Personality Measurement Using Item Response Theory and Social Media Text Mining. Frontiers in psychology\| PubMed ID: 34367029	2021
Zoo: Selecting Transcriptomic and Methylomic Biomarkers by Ensembling Animal-Inspired Swarm Intelligence Feature Selection Algorithms. Genes\| PubMed ID: 34828418	2021
Decreased Iron Ion Concentrations in the Peripheral Blood Correlate with Coronary Atherosclerosis. Nutrients\| PubMed ID: 35057500	2022
Describe Molecules by a Heterogeneous Graph Neural Network with Transformer-like Attention for Supervised Property Predictions. ACS omega\| PubMed ID: 35128279	2022
Subtly altered topological asymmetry of brain structural covariance networks in autism spectrum disorder across 43 datasets from the ENIGMA consortium. Molecular psychiatry\| PubMed ID: 35136228	2022
A polygenic stacking classifier revealed the complicated platelet transcriptomic landscape of adult immune thrombocytopenia. Molecular therapy. Nucleic acids\| PubMed ID: 35505964	2022
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction. Briefings in bioinformatics\| PubMed ID: 35514183	2022
MuscNet, a Weighted Voting Model of Multi-Source Connectivity Networks to Predict Mild Cognitive Impairment Using Resting-State Functional MRI. IEEE access : practical innovations, open solutions\| PubMed ID: 35548102	2020
AcneGrader: An ensemble pruning of the deep learning base models to grade acne. Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI)\| PubMed ID: 35639819	2022
Editorial: Biomarker Detection Algorithms and Tools for Medical Imaging or Omics Data. Frontiers in genetics\| PubMed ID: 35692838	2022
Transforming OMIC features for classification using siamese convolutional networks. Journal of bioinformatics and computational biology\| PubMed ID: 35818996	2022
Pan-cancer identification of the relationship of metabolism-related differentially expressed transcription regulation with non-differentially expressed target genes via a gated recurrent uni... Computers in biology and medicine\| PubMed ID: 35878490	2022
Integration of lncRNAs, Protein-Coding Genes and Pathology Images for Detecting Metastatic Melanoma. Genes\| PubMed ID: 36292801	2022
AcneTyper: An automatic diagnosis method of dermoscopic acne image via self-ensemble and stacking. Technology and health care : official journal of the European Society for Engineering and Medicine\| PubMed ID: 36617797	2023
Seven non-differentially expressed 'dark biomarkers' show transcriptional dysregulation in chronic lymphocytic leukemia. Personalized medicine\| PubMed ID: 36705049	2023
Gender-specific dysregulations of nondifferentially expressed biomarkers of metastatic colon cancer. Computational biology and chemistry\| PubMed ID: 37058814	2023
EpiTEAmDNA: Sequence feature representation via transfer learning and ensemble learning for identifying multiple DNA epigenetic modification types across species. Computers in biology and medicine\| PubMed ID: 37196456	2023
Transcriptional Dysregulations of Seven Non-Differentially Expressed Genes as Biomarkers of Metastatic Colon Cancer. Genes\| PubMed ID: 37372321	2023
OCMR: A comprehensive framework for optical chemical molecular recognition. Computers in biology and medicine\| PubMed ID: 37393787	2023
Undifferentially Expressed CXXC5 as a Transcriptionally Regulatory Biomarker of Breast Cancer. Advanced biology\| PubMed ID: 37423953	2023
Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis. Briefings in bioinformatics\| PubMed ID: 37427963	2023
Reconstructing the cytokine view for the multi-view prediction of COVID-19 mortality. BMC infectious diseases\| PubMed ID: 37735372	2023
Multi-view progression diagnosis of thyroid cancer by integrating platelet transcriptomes and blood routine tests. Computers in biology and medicine\| PubMed ID: 37918259	2023
Computational Characterization of Undifferentially Expressed Genes with Altered Transcription Regulation in Lung Cancer. Genes\| PubMed ID: 38136991	2023
MolFeSCue: Enhancing molecular property prediction in Data-Limited and imbalanced contexts using Few-Shot and contrastive learning. Bioinformatics (Oxford, England)\| PubMed ID: 38426310	2024