John M. Coffin

John M. Coffin

Department of Molecular Biology and Microbiology, Tuffts University

Affiliated withTuffts University

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1
Year
Amplifying and Quantifying HIV-1 RNA in HIV Infected Individuals with Viral Loads Below the Limit of Detection by Standard Clinical Assays
Publication title

Cited by 10

2011

Other Publications

Article
Year
Evolution of retroviruses: fossils in our DNA.

Proceedings of the American Philosophical Society| PubMed ID: 15551500

2004
Proposed alternatives for the use of anti-HIV drugs: is it appropriate?

Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy| PubMed ID: 11504471

1999
2002
The solitary wave of asexual evolution.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 12525686

2003
Mechanisms of avian retroviral host range extension.

Journal of virology| PubMed ID: 12767991

2003
Virology. Weapons of mutational destruction.

Science (New York, N.Y.)| PubMed ID: 12920286

2003
2003
Nonrandom HIV-1 infection and double infection via direct and cell-mediated pathways.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 14707263

2004
Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 14757818

2004
2004
2004
2005
Relationship between retroviral DNA-integration-site selection and host cell transcription.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 15659548

2005
Mechanism for nucleoside analog-mediated abrogation of HIV-1 replication: balance between RNase H activity and nucleotide excision.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 15684061

2005
Symmetrical base preferences surrounding HIV-1, avian sarcoma/leukosis virus, and murine leukemia virus integration sites.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 15802467

2005
2005
2005
2005
2006
2006
2006
Mutations in the connection domain of HIV-1 reverse transcriptase increase 3'-azido-3'-deoxythymidine resistance.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 17179211

2007
2007
2007
2007
2007
Oncogenicity of DNA in vivo: tumor induction with expression plasmids for activated H-ras and c-myc.

Biologicals : journal of the International Association of Biological Standardization| PubMed ID: 18218323

2008
2008
Low-level viremia persists for at least 7 years in patients on suppressive antiretroviral therapy.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18332425

2008
2008
2008
HIV-1 reverse transcriptase connection subdomain mutations reduce template RNA degradation and enhance AZT excision.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18667707

2008
Effects of retroviruses on host genome function.

Annual review of genetics| PubMed ID: 18694346

2008
Host-retrovirus arms race: trimming the budget.

Cell host & microbe| PubMed ID: 18779045

2008
Attenuation by a thousand cuts.

The New England journal of medicine| PubMed ID: 19020330

2008
2008
2009
2009
High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 19628694

2009
2009
Virology. A new virus for old diseases?

Science (New York, N.Y.)| PubMed ID: 19815721

2009
2009
2010
2010
2010
Multi-site adaptation in the presence of infrequent recombination.

Theoretical population biology| PubMed ID: 20149814

2010
2010
Flexible use of nuclear import pathways by HIV-1.

Cell host & microbe| PubMed ID: 20227665

2010
2010
2010
2010
2010
2010
2011
2010
2010
2011
2011
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 21436045

2011
Role of low-frequency HIV-1 variants in failure of nevirapine-containing antiviral therapy in women previously exposed to single-dose nevirapine.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 21576473

2011
Recombinant origin of the retrovirus XMRV.

Science (New York, N.Y.)| PubMed ID: 21628392

2011
Majority of CD4+ T cells from peripheral blood of HIV-1-infected individuals contain only one HIV DNA molecule.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 21690402

2011
2011
2012
2011
2011
2012
2011
2011