William M. Old

Department of Molecular, University of Colorado

Affiliated withUniversity of Colorado University of Colorado School of Medicine

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 9	2019

Other Publications

Article	Year
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics. Analytical chemistry\| PubMed ID: 15228325	2004
Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 15979981	2005
Improved validation of peptide MS/MS assignments using spectral intensity prediction. Molecular & cellular proteomics : MCP\| PubMed ID: 17018520	2007
Achieving in-depth proteomics profiling by mass spectrometry. ACS chemical biology\| PubMed ID: 17243782	2007
Mps1 activation loop autophosphorylation enhances kinase activity. The Journal of biological chemistry\| PubMed ID: 17728254	2007
Mapping protein post-translational modifications with mass spectrometry. Nature methods\| PubMed ID: 17901869	2007
A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins. Molecular & cellular proteomics : MCP\| PubMed ID: 19106086	2009
Budding yeast centrosome duplication requires stabilization of Spc29 via Mps1-mediated phosphorylation. The Journal of biological chemistry\| PubMed ID: 19269975	2009
Functional proteomics identifies targets of phosphorylation by B-Raf signaling in melanoma. Molecular cell\| PubMed ID: 19362540	2009
Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies. Journal of proteome research\| PubMed ID: 20578722	2010
Spectrum-to-spectrum searching using a proteome-wide spectral library. Molecular & cellular proteomics : MCP\| PubMed ID: 21532008	2011
IsoformResolver: A peptide-centric algorithm for protein inference. Journal of proteome research\| PubMed ID: 21599010	2011
The non-coding B2 RNA binds to the DNA cleft and active-site region of RNA polymerase II. Journal of molecular biology\| PubMed ID: 23416138	2013
Identification of global ferredoxin interaction networks in Chlamydomonas reinhardtii. The Journal of biological chemistry\| PubMed ID: 24100040	2013
Development of substrate-selective probes for affinity pulldown of histone demethylases. ACS chemical biology\| PubMed ID: 25335116	2015
Licensing of yeast centrosome duplication requires phosphoregulation of sfi1. PLoS genetics\| PubMed ID: 25340401	2014
Gas-phase acidities of nitrated azoles as determined by the extended kinetic method and computations. The journal of physical chemistry. A\| PubMed ID: 25521708	2015
Identification of a family of fatty-acid-speciated sonic hedgehog proteins, whose members display differential biological properties. Cell reports\| PubMed ID: 25732819	2015
A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells. Molecular & cellular proteomics : MCP\| PubMed ID: 25850435	2015
Large-Scale Examination of Factors Influencing Phosphopeptide Neutral Loss during Collision Induced Dissociation. Journal of the American Society for Mass Spectrometry\| PubMed ID: 25851653	2015
Centromere protein F includes two sites that couple efficiently to depolymerizing microtubules. The Journal of cell biology\| PubMed ID: 26101217	2015
Erratum to: Large-Scale Examination of Factors Influencing Phosphopeptide Neutral Loss During Collision Induced Dissociation. Journal of the American Society for Mass Spectrometry\| PubMed ID: 26169511	2015
Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics. Cell reports\| PubMed ID: 27050516	2016
A Synonymous Mutation Upstream of the Gene Encoding a Weak-Link Enzyme Causes an Ultrasensitive Response in Growth Rate. Journal of bacteriology\| PubMed ID: 27501982	2016
Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications. Cell reports\| PubMed ID: 28768201	2017
Identification of the primary peptide contaminant that inhibits fibrillation and toxicity in synthetic amyloid-β42. PloS one\| PubMed ID: 28792968	2017
Specificity of Phosphorylation Responses to Mitogen Activated Protein (MAP) Kinase Pathway Inhibitors in Melanoma Cells. Molecular & cellular proteomics : MCP\| PubMed ID: 29255136	2018
Dengue viruses cleave STING in humans but not in nonhuman primates, their presumed natural reservoir. eLife\| PubMed ID: 29557779	2018
Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme. PLoS genetics\| PubMed ID: 30148850	2018
A Novel Class of ER Membrane Proteins Regulates ER-Associated Endosome Fission. Cell\| PubMed ID: 30220460	2018
The nuclear interactome of DYRK1A reveals a functional role in DNA damage repair. Scientific reports\| PubMed ID: 31024071	2019
Temporal Metabolite, Ion, and Enzyme Activity Profiling Using Fluorescence Microscopy and Genetically Encoded Biosensors. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 31119673	2019
Hidden resources in the genome restore PLP synthesis and robust growth after deletion of the essential gene . Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 31712440	2019