James S. Schwaber

Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University

Affiliated withThomas Jefferson University

Research Area

Biography

James S. Schwaber has not added Biography.
If you are James S. Schwaber and would like to personalize this page please email our Author Liaison for assistance.

JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 1	2022
Publication title Cited by 9	2020

Other Publications

Article	Year
PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. Omics : a journal of integrative biology\| PubMed ID: 14583114	2003
Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. Genome research\| PubMed ID: 14597654	2003
Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius. Physiological genomics\| PubMed ID: 16189278	2005
A universal reference sample derived from clone vector for improved detection of differential gene expression. BMC genomics\| PubMed ID: 16677381	2006
Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome biology\| PubMed ID: 16784547	2006
Epidermal growth factor receptor-induced circadian-time-dependent gene regulation in suprachiasmatic nucleus. Neuroreport\| PubMed ID: 16932154	2006
Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach. Systems biology\| PubMed ID: 16986625	2006
From promoter analysis to transcriptional regulatory network prediction using PAINT. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 18314577	2007
Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius. American journal of physiology. Regulatory, integrative and comparative physiology\| PubMed ID: 18434436	2008
A fast carrier chromatin immunoprecipitation method applicable to microdissected tissue samples. Journal of neuroscience methods\| PubMed ID: 18502516	2008
Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. BMC systems biology\| PubMed ID: 21167049	2010
Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways. Experimental physiology\| PubMed ID: 22002872	2012
Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcoholism, clinical and experimental research\| PubMed ID: 22486438	2012
Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei. Journal of neuroinflammation\| PubMed ID: 22626265	2012
Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus. PloS one\| PubMed ID: 22662235	2012
Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal. Alcoholism, clinical and experimental research\| PubMed ID: 22827539	2013
Multiscale model of dynamic neuromodulation integrating neuropeptide-induced signaling pathway activity with membrane electrophysiology. Biophysical journal\| PubMed ID: 25564868	2015
MicroRNA network changes in the brain stem underlie the development of hypertension. Physiological genomics\| PubMed ID: 26126791	2015
The role of the gut-brain axis in alcohol use disorders. Progress in neuro-psychopharmacology & biological psychiatry\| PubMed ID: 26188287	2016
Computational modeling of cytokine signaling in microglia. Molecular bioSystems\| PubMed ID: 26440115	2015
Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features. PLoS computational biology\| PubMed ID: 26491963	2015
Systemic leukotriene B receptor antagonism lowers arterial blood pressure and improves autonomic function in the spontaneously hypertensive rat. The Journal of physiology\| PubMed ID: 27230966	2016
Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock. Frontiers in neuroscience\| PubMed ID: 27826225	2016
A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation. PLoS computational biology\| PubMed ID: 28732007	2017
Single-Cell Glia and Neuron Gene Expression in the Central Amygdala in Opioid Withdrawal Suggests Inflammation With Correlated Gut Dysbiosis. Frontiers in neuroscience\| PubMed ID: 31333398	2019
A Comprehensive Integrated Anatomical and Molecular Atlas of Rat Intrinsic Cardiac Nervous System. iScience\| PubMed ID: 32460006	2020
Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. Frontiers in neuroscience\| PubMed ID: 32477043	2020
Investigating the Effects of Brainstem Neuronal Adaptation on Cardiovascular Homeostasis. Frontiers in neuroscience\| PubMed ID: 32508573	2020
Similarities in alcohol and opioid withdrawal syndromes suggest common negative reinforcement mechanisms involving the interoceptive antireward pathway. Neuroscience and biobehavioral reviews\| PubMed ID: 33647322	2021
Input-output signal processing plasticity of vagal motor neurons in response to cardiac ischemic injury. iScience\| PubMed ID: 33665562	2021
Systemic Immune Bias Delineates Malignant Astrocytoma Survival Cohorts. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 33685995	2021
Mapping the little brain at the heart by an interdisciplinary systems biology team. iScience\| PubMed ID: 34113808	2021
A single cell transcriptomics map of paracrine networks in the intrinsic cardiac nervous system. iScience\| PubMed ID: 34337356	2021
3D single cell scale anatomical map of sex-dependent variability of the rat intrinsic cardiac nervous system. iScience\| PubMed ID: 34355144	2021
Single Cell Scale Neuronal and Glial Gene Expression and Putative Cell Phenotypes and Networks in the Nucleus Tractus Solitarius in an Alcohol Withdrawal Time Series. Frontiers in systems neuroscience\| PubMed ID: 34867221	2021