Jonathan D. Dinman

Department of Cell Biology and Molecular Genetics, University of Maryland

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 7	2011

Other Publications

Article	Year
The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 11959986	2002
New targets for antivirals: the ribosomal A-site and the factors that interact with it. Virology\| PubMed ID: 12202206	2002
An "integrated model" of programmed ribosomal frameshifting. Trends in biochemical sciences\| PubMed ID: 12217519	2002
The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. RNA (New York, N.Y.)\| PubMed ID: 12554858	2003
Delayed rRNA processing results in significant ribosome biogenesis and functional defects. Molecular and cellular biology\| PubMed ID: 12588980	2003
Decreased peptidyltransferase activity correlates with increased programmed -1 ribosomal frameshifting and viral maintenance defects in the yeast Saccharomyces cerevisiae. RNA (New York, N.Y.)\| PubMed ID: 12869709	2003
An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae. RNA (New York, N.Y.)\| PubMed ID: 12869712	2003
A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element. Nucleic acids research\| PubMed ID: 14762205	2004
Evidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough. RNA (New York, N.Y.)\| PubMed ID: 15388879	2004
Systematic analysis of bicistronic reporter assay data. Nucleic acids research\| PubMed ID: 15561995	2004
Torsional restraint: a new twist on frameshifting pseudoknots. Nucleic acids research\| PubMed ID: 15800212	2005
A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal. PLoS biology\| PubMed ID: 15884978	2005
Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Molecular genetics and genomics : MGG\| PubMed ID: 16047201	2005
Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis. Molecular and cellular biology\| PubMed ID: 16314511	2005
Comparative study of the effects of heptameric slippery site composition on -1 frameshifting among different eukaryotic systems. RNA (New York, N.Y.)\| PubMed ID: 16497657	2006
Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting. Eukaryotic cell\| PubMed ID: 16607023	2006
Efficient expression of the 15-kDa form of infectious pancreatic necrosis virus VP5 by suppression of a UGA codon. Virus research\| PubMed ID: 16891025	2006
An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome. Molecular and cellular biology\| PubMed ID: 17000775	2006
Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae. Nucleic acids research\| PubMed ID: 17158156	2007
Ribosomal protein L3: influence on ribosome structure and function. RNA biology\| PubMed ID: 17194937	2004
Optimization of ribosome structure and function by rRNA base modification. PloS one\| PubMed ID: 17245450	2007
Ribosomal protein L3: gatekeeper to the A site. Molecular cell\| PubMed ID: 17386264	2007
Programmed Ribosomal Frameshifting Goes Beyond Viruses: Organisms from all three kingdoms use frameshifting to regulate gene expression, perhaps signaling a paradigm shift. Microbe (Washington, D.C.)\| PubMed ID: 17541450	2006
Differentiating between near- and non-cognate codons in Saccharomyces cerevisiae. PloS one\| PubMed ID: 17565370	2007
Integration of residue-specific acid cleavage into proteomic workflows. Journal of proteome research\| PubMed ID: 17902642	2007
Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation. RNA (New York, N.Y.)\| PubMed ID: 17921318	2007
5S rRNA: Structure and Function from Head to Toe. International journal of biomedical science : IJBS\| PubMed ID: 18074004	2005
Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications. Journal of proteome research\| PubMed ID: 18189344	2008
rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance. Nucleic acids research\| PubMed ID: 18203742	2008
Structure/function analysis of yeast ribosomal protein L2. Nucleic acids research\| PubMed ID: 18263608	2008
A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting. Nucleic acids research\| PubMed ID: 18344525	2008
The role of programmed-1 ribosomal frameshifting in coronavirus propagation. Frontiers in bioscience : a journal and virtual library\| PubMed ID: 18508552	2008
PRFdb: a database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals. BMC genomics\| PubMed ID: 18637175	2008
Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic acids research\| PubMed ID: 18824477	2008
The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA (New York, N.Y.)\| PubMed ID: 18824512	2008
Ribosomal protein L3 functions as a 'rocker switch' to aid in coordinating of large subunit-associated functions in eukaryotes and Archaea. Nucleic acids research\| PubMed ID: 18832371	2008
The eukaryotic ribosome: current status and challenges. The Journal of biological chemistry\| PubMed ID: 19117941	2009
Expanding the ribosomal universe. Structure (London, England : 1993)\| PubMed ID: 20004156	2009
Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins. Journal of virology\| PubMed ID: 20164235	2010
Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method. RNA biology\| PubMed ID: 20404492	2010
A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site. Nucleic acids research\| PubMed ID: 20660012	2010
A flexible loop in yeast ribosomal protein L11 coordinates P-site tRNA binding. Nucleic acids research\| PubMed ID: 20705654	2010
The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting. Nucleic acids research\| PubMed ID: 20823091	2011
Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast. Nucleic acids research\| PubMed ID: 21109528	2011
Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus. Journal of virology\| PubMed ID: 21389125	2011
Mutations of highly conserved bases in the peptidyltransferase center induce compensatory rearrangements in yeast ribosomes. RNA (New York, N.Y.)\| PubMed ID: 21441349	2011
The central core region of yeast ribosomal protein L11 is important for subunit joining and translational fidelity. Molecular genetics and genomics : MGG\| PubMed ID: 21519857	2011
A rapid, inexpensive yeast-based dual-fluorescence assay of programmed--1 ribosomal frameshifting for high-throughput screening. Nucleic acids research\| PubMed ID: 21602263	2011
An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome. PloS one\| PubMed ID: 21625514	2011
Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus. Virology\| PubMed ID: 21862095	2011
rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. Molecular cell\| PubMed ID: 22099312	2011
Control of gene expression by translational recoding. Advances in protein chemistry and structural biology\| PubMed ID: 22243583	2012