Sander Granneman

Centre for Synthetic and Systems Biology, University of Edinburgh

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 10	2020

Other Publications

Article	Year
Building ribosomes: even more expensive than expected? Current biology : CB\| PubMed ID: 17550767	2007
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19482942	2009
Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis. Molecular cell\| PubMed ID: 19941819	2009
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking. The EMBO journal\| PubMed ID: 20453830	2010
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts. The EMBO journal\| PubMed ID: 21460797	2011
Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing. The EMBO journal\| PubMed ID: 21556049	2011
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21610164	2011
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease. The EMBO journal\| PubMed ID: 21811236	2011
Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits. Nature structural & molecular biology\| PubMed ID: 22751017	2012
Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel. Nature structural & molecular biology\| PubMed ID: 23142978	2012
Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome. Nucleic acids research\| PubMed ID: 23193268	2013
Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast. Genes & development\| PubMed ID: 24065768	2013
Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly. Molecular cell\| PubMed ID: 24239293	2013
Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export. Nature\| PubMed ID: 24240281	2014
PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast. Genome biology\| PubMed ID: 24393166	2014
Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli. Molecular cell\| PubMed ID: 24910100	2014
Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution. Nucleic acids research\| PubMed ID: 25200078	2014
Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits. Nucleic acids research\| PubMed ID: 25294836	2014
A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation. The Journal of cell biology\| PubMed ID: 25404745	2014
The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot. PLoS biology\| PubMed ID: 25710520	2015
A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation. The Journal of cell biology\| PubMed ID: 26150393	2015
Cell populations can use aneuploidy to survive telomerase insufficiency. Nature communications\| PubMed ID: 26489519	2015
Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling. Genome biology\| PubMed ID: 26679539	2015
Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough. PLoS genetics\| PubMed ID: 26694144	2015
The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection. Genes & development\| PubMed ID: 27401558	2016
Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments. Nature methods\| PubMed ID: 27819660	2017
Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress. Nature communications\| PubMed ID: 28400552	2017
Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation. PLoS genetics\| PubMed ID: 28542199	2017
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast. Nature communications\| PubMed ID: 28959008	2017
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC biology\| PubMed ID: 29117863	2017
Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements. Nucleic acids research\| PubMed ID: 29373706	2018
An RNA-dependent mechanism for transient expression of bacterial translocation filaments. Nucleic acids research\| PubMed ID: 29432565	2018
High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of cDNA (CRAC). Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 29484598	2018
Purification of cross-linked RNA-protein complexes by phenol-toluol extraction. Nature communications\| PubMed ID: 30824702	2019
Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 31602614	2019
Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation. eLife\| PubMed ID: 32356726	2020