W. Andy Tao

Department of Biochemistry, Purdue University

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 2	2020

Other Publications

Article	Year
Parallel Reactions for Enantiomeric Quantification of Peptides by Mass Spectrometry This work was supported by the U.S. Department of Energy, Office of Energy Research. W.A.T. acknowledges f... Angewandte Chemie (International ed. in English)\| PubMed ID: 11241614	2001
Synthesis of B- and P-Heterocycles by Reaction of Cyclic Acetals and Ketals with Borinium and Phosphonium Ions. The Journal of organic chemistry\| PubMed ID: 11674423	1999
Quotient ratio method for quantitative enantiomeric determination by mass spectrometry. Analytical chemistry\| PubMed ID: 12175167	2002
Ligand and metal-ion effects in metal-ion clusters used for chiral analysis of alpha-hydroxy acids by the kinetic method. Analytical and bioanalytical chemistry\| PubMed ID: 12185574	2002
Chiral analysis by MS. Analytical chemistry\| PubMed ID: 12530808	2003
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. Nature methods\| PubMed ID: 16094384	2005
Polar acetalization and transacetalization in the gas phase: the Eberlin reaction. Chemical reviews\| PubMed ID: 16402776	2006
A novel quantitative proteomics strategy to study phosphorylation-dependent peptide-protein interactions. Journal of proteome research\| PubMed ID: 17203957	2007
PTEN-deficient intestinal stem cells initiate intestinal polyposis. Nature genetics\| PubMed ID: 17237784	2007
Rapid ambient mass spectrometric profiling of intact, untreated bacteria using desorption electrospray ionization. Chemical communications (Cambridge, England)\| PubMed ID: 17279261	2007
A novel quantitative proteomics reagent based on soluble nanopolymers. Chemical communications (Cambridge, England)\| PubMed ID: 17356773	2007
Soluble nanopolymer-based phosphoproteomics for studying protein phosphatase. Methods (San Diego, Calif.)\| PubMed ID: 17532516	2007
Profiling constitutive proteolytic events in vivo. The Biochemical journal\| PubMed ID: 17650073	2007
Soluble polymer-based isotopic labeling (SoPIL): a new strategy to discover protein biomarkers? Expert review of proteomics\| PubMed ID: 17941815	2007
Quantitative analysis of snake venoms using soluble polymer-based isotope labeling. Molecular & cellular proteomics : MCP\| PubMed ID: 18089550	2008
Playing tag with quantitative proteomics. Analytical and bioanalytical chemistry\| PubMed ID: 18843486	2009
Quantitative phospho-proteomics based on soluble nanopolymers. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 19241010	2009
Identification of serine/threonine kinase substrates in the human pathogen group B streptococcus. Journal of proteome research\| PubMed ID: 19309132	2009
In-depth analyses of kinase-dependent tyrosine phosphoproteomes based on metal ion-functionalized soluble nanopolymers. Molecular & cellular proteomics : MCP\| PubMed ID: 20562096	2010
Cloning, expression, and hemostatic activities of a disintegrin, r-mojastin 1, from the mohave rattlesnake (Crotalus scutulatus scutulatus). Thrombosis research\| PubMed ID: 20598348	2010
Regulation of Syk by phosphorylation on serine in the linker insert. The Journal of biological chemistry\| PubMed ID: 20956537	2010
Purification and characterization of a metalloproteinase, Porthidin-1, from the venom of Lansberg's hog-nosed pitvipers (Porthidium lansbergii hutmanni). Toxicon : official journal of the International Society on Toxinology\| PubMed ID: 21255600	2011
Phosphorylation assay based on multifunctionalized soluble nanopolymer. Analytical chemistry\| PubMed ID: 21395237	2011
Identification of drug targets in vitro and in living cells by soluble-nanopolymer-based proteomics. Angewandte Chemie (International ed. in English)\| PubMed ID: 21455918	2011
Proteomic studies of Syk-interacting proteins using a novel amine-specific isotope tag and GFP nanotrap. Journal of the American Society for Mass Spectrometry\| PubMed ID: 21472591	2011
Aptamer in bioanalytical applications. Analytical chemistry\| PubMed ID: 21524128	2011
Facile determination of double bond position in unsaturated fatty acids and esters by low temperature plasma ionization mass spectrometry. Analytical chemistry\| PubMed ID: 21539336	2011
Direct detection of fatty acid ethyl esters using low temperature plasma (LTP) ambient ionization mass spectrometry for rapid bacterial differentiation. The Analyst\| PubMed ID: 21706093	2011
Functionalized soluble nanopolymers for phosphoproteome analysis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 21948422	2011
Regulation of parkin and PINK1 by neddylation. Human molecular genetics\| PubMed ID: 22388932	2012
Sensitive kinase assay linked with phosphoproteomics for identifying direct kinase substrates. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22451900	2012
Chemical visualization of phosphoproteomes on membrane. Molecular & cellular proteomics : MCP\| PubMed ID: 22593177	2012
Identification of cytoskeletal elements enclosing the ATP pools that fuel human red blood cell membrane cation pumps. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22745158	2012
Multiplexed quantitation of protein expression and phosphorylation based on functionalized soluble nanopolymers. Journal of the American Chemical Society\| PubMed ID: 23088311	2012
Identification of the components of a glycolytic enzyme metabolon on the human red blood cell membrane. The Journal of biological chemistry\| PubMed ID: 23150667	2013
Is phosphoproteomics ready for clinical research? Clinica chimica acta; international journal of clinical chemistry\| PubMed ID: 23159844	2013
2012 ASMS Fall Workshop: mass spectrometry-based phosphorylation analysis and phosphoproteomics. Journal of the American Society for Mass Spectrometry\| PubMed ID: 23381688	2013
Syk inhibits the activity of protein kinase A by phosphorylating tyrosine 330 of the catalytic subunit. The Journal of biological chemistry\| PubMed ID: 23447535	2013
A quantitative proteomics-based competition binding assay to characterize pITAM-protein interactions. Analytical chemistry\| PubMed ID: 23611696	2013
Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC). Molecular & cellular proteomics : MCP\| PubMed ID: 23660473	2013
Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23776212	2013
Identification of direct tyrosine kinase substrates based on protein kinase assay-linked phosphoproteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 23793017	2013
Intracellular targets for a phosphotyrosine peptidomimetic include the mitotic kinesin, MCAK. Biochemical pharmacology\| PubMed ID: 23830822	2013
Phosphatase of regenerating liver 3 (PRL3) provokes a tyrosine phosphoproteome to drive prometastatic signal transduction. Molecular & cellular proteomics : MCP\| PubMed ID: 24030100	2013
Tissue phosphoproteomics with PolyMAC identifies potential therapeutic targets in a transgenic mouse model of HER2 positive breast cancer. Electrophoresis\| PubMed ID: 24723360	2014
Quantitation of the phosphoproteome using the library-assisted extracted ion chromatogram (LAXIC) strategy. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24792004	2014
Global phosphoproteomics of activated B cells using complementary metal ion functionalized soluble nanopolymers. Analytical chemistry\| PubMed ID: 24905233	2014
Specific visualization and identification of phosphoproteome in gels. Analytical chemistry\| PubMed ID: 24941108	2014
Identification of ERK1 Direct Substrates using Stable Isotope Labeled Kinase Assay-Linked Phosphoproteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 25022875	2014
Current technologies to identify protein kinase substrates in high throughput. Frontiers in biology\| PubMed ID: 25110472	2013
Nitric oxide negatively regulates abscisic acid signaling in guard cells by S-nitrosylation of OST1. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25550508	2015
The sensor histidine kinase RgfC affects group B streptococcal virulence factor expression independent of its response regulator RgfA. Infection and immunity\| PubMed ID: 25561709	2015
The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing. Molecular cell\| PubMed ID: 25684209	2015
Universal non-antibody detection of protein phosphorylation using pIMAGO. Current protocols in chemical biology\| PubMed ID: 25727060	2015
Sensitive measurement of total protein phosphorylation level in complex protein samples. The Analyst\| PubMed ID: 25857711	2015
In-Depth Analyses of B Cell Signaling Through Tandem Mass Spectrometry of Phosphopeptides Enriched by PolyMAC. International journal of mass spectrometry\| PubMed ID: 25954137	2015
Time-Resolved Proteomic Visualization of Dendrimer Cellular Entry and Trafficking. Journal of the American Chemical Society\| PubMed ID: 26425924	2015
MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis. PLoS genetics\| PubMed ID: 26492035	2015
Identification of Direct Kinase Substrates via Kinase Assay-Linked Phosphoproteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 26584932	2016
The E3 ubiquitin ligase CHIP mediates ubiquitination and proteasomal degradation of PRMT5. Biochimica et biophysica acta\| PubMed ID: 26658161	2016
Multiplexed Imaging of Protein Phosphorylation on Membranes Based on Ti(IV) Functionalized Nanopolymers. Chembiochem : a European journal of chemical biology\| PubMed ID: 27037847	2016
BNIP3 Protein Suppresses PINK1 Kinase Proteolytic Cleavage to Promote Mitophagy. The Journal of biological chemistry\| PubMed ID: 27528605	2016
Three-Dimensionally Functionalized Reverse Phase Glycoprotein Array for Cancer Biomarker Discovery and Validation. Journal of the American Chemical Society\| PubMed ID: 27933927	2016
A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation. Cell research\| PubMed ID: 27934869	2017
Kinase Assay-Linked Phosphoproteomics: Discovery of Direct Kinase Substrates. Methods in enzymology\| PubMed ID: 28137576	2017
MST50 is involved in multiple MAP kinase signaling pathways in Magnaporthe oryzae. Environmental microbiology\| PubMed ID: 28244240	2017
Phosphoproteins in extracellular vesicles as candidate markers for breast cancer. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 28270605	2017
Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry. Journal of the American Society for Mass Spectrometry\| PubMed ID: 28283928	2017
The SnRK2 kinases modulate miRNA accumulation in Arabidopsis. PLoS genetics\| PubMed ID: 28419088	2017
Identification of Plant Kinase Substrates Based on Kinase Assay-Linked Phosphoproteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 28730489	2017
A protein complex regulates RNA processing of intronic heterochromatin-containing genes in . Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 28808009	2017
EZH2 Modifies Sunitinib Resistance in Renal Cell Carcinoma by Kinome Reprogramming. Cancer research\| PubMed ID: 28978636	2017
MAP Kinase Cascades Regulate the Cold Response by Modulating ICE1 Protein Stability. Developmental cell\| PubMed ID: 29056551	2017
Recent advances in phosphoproteomics and application to neurological diseases. The Analyst\| PubMed ID: 29094114	2017
Identification of Upstream Kinases by Fluorescence Complementation Mass Spectrometry. ACS central science\| PubMed ID: 29104924	2017
Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases. The Plant cell\| PubMed ID: 29233856	2018
Acquisition of Cholangiocarcinoma Traits during Advanced Hepatocellular Carcinoma Development in Mice. The American journal of pathology\| PubMed ID: 29248454	2018
Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response. Molecular cell\| PubMed ID: 29290610	2018
Analytical Pipeline for Discovery and Verification of Glycoproteins from Plasma-Derived Extracellular Vesicles as Breast Cancer Biomarkers. Analytical chemistry\| PubMed ID: 29629753	2018
Replacement of C-O by P-O in Cyclic Acetals and Ketals. Angewandte Chemie (International ed. in English)\| PubMed ID: 29711658	1999
Arabidopsis Duodecuple Mutant of PYL ABA Receptors Reveals PYL Repression of ABA-Independent SnRK2 Activity. Cell reports\| PubMed ID: 29898403	2018
Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress. Molecular & cellular proteomics : MCP\| PubMed ID: 30006488	2018
Highly Efficient Phosphoproteome Capture and Analysis from Urinary Extracellular Vesicles. Journal of proteome research\| PubMed ID: 30080416	2018
High-Throughput Phosphorylation Screening and Validation through Ti(IV)-Nanopolymer Functionalized Reverse Phase Phosphoprotein Array. Analytical chemistry\| PubMed ID: 30103608	2018
Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin. Nature communications\| PubMed ID: 30382101	2018
Leucine-rich repeat extensin proteins regulate plant salt tolerance in . Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 30514814	2018
Arabinose biosynthesis is critical for salt stress tolerance in Arabidopsis. The New phytologist\| PubMed ID: 31009077	2019
Methyltransferase-like 21e inhibits 26S proteasome activity to facilitate hypertrophy of type IIb myofibers. FASEB journal : official publication of the Federation of American Societies for Experimental Biology\| PubMed ID: 31162944	2019
Methyltransferase-like 21c methylates and stabilizes the heat shock protein Hspa8 in type I myofibers in mice. The Journal of biological chemistry\| PubMed ID: 31346037	2019
Tracking Pathogen Infections by Time-Resolved Chemical Proteomics. Angewandte Chemie (International ed. in English)\| PubMed ID: 31769915	2020
Sequential phosphoproteomics and N-glycoproteomics of plasma-derived extracellular vesicles. Nature protocols\| PubMed ID: 31863077	2020
Mapping proteome-wide targets of protein kinases in plant stress responses. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 31992638	2020
A RAF-SnRK2 kinase cascade mediates early osmotic stress signaling in higher plants. Nature communications\| PubMed ID: 32001690	2020
A phosphorylation-based switch controls TAA1-mediated auxin biosynthesis in plants. Nature communications\| PubMed ID: 32015349	2020
Plasma-Derived Extracellular Vesicle Phosphoproteomics through Chemical Affinity Purification. Journal of proteome research\| PubMed ID: 32396726	2020