Wei-Jun Qian

Biological Sciences Division, Pacific Northwest National Laboratory

Affiliated withPacific Northwest National Laboratory

Research Area

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 9	2021
Publication title Cited by 4	2020

Other Publications

Article	Year
Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures. Analytical chemistry\| PubMed ID: 14714534	2003
High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology. Analytical chemistry\| PubMed ID: 15362891	2004
Simultaneous monitoring of Zn2+ secretion and intracellular Ca2+ from islets and islet cells by fluorescence microscopy. BioTechniques\| PubMed ID: 15597541	2004
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry. Proteomics\| PubMed ID: 15627965	2005
Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry. Analytical chemistry\| PubMed ID: 15649034	2005
Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. Journal of proteome research\| PubMed ID: 15707357	2005
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome. Proteomics\| PubMed ID: 15742320	2005
Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach. Molecular & cellular proteomics : MCP\| PubMed ID: 15753121	2005
High-throughput proteomics using Fourier transform ion cyclotron resonance mass spectrometry. Expert review of proteomics\| PubMed ID: 15966802	2004
Utilizing human blood plasma for proteomic biomarker discovery. Journal of proteome research\| PubMed ID: 16083256	2005
Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. Journal of proteome research\| PubMed ID: 16335952	2005
Development and evaluation of a micro- and nanoscale proteomic sample preparation method. Journal of proteome research\| PubMed ID: 16335993	2005
Advances in proteomics data analysis and display using an accurate mass and time tag approach. Mass spectrometry reviews\| PubMed ID: 16429408	2006
Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics. Journal of proteome research\| PubMed ID: 16457593	2006
Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment. Journal of proteome research\| PubMed ID: 16457602	2006
High dynamic range characterization of the trauma patient plasma proteome. Molecular & cellular proteomics : MCP\| PubMed ID: 16684767	2006
Endogenously nitrated proteins in mouse brain: links to neurodegenerative disease. Biochemistry\| PubMed ID: 16800626	2006
Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry. Molecular & cellular proteomics : MCP\| PubMed ID: 16854842	2006
Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications. Molecular & cellular proteomics : MCP\| PubMed ID: 16887931	2006
Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS. Journal of proteome research\| PubMed ID: 17137336	2006
Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry. Genome research\| PubMed ID: 17255552	2007
Quantitative proteomic approaches for studying phosphotyrosine signaling. Expert review of proteomics\| PubMed ID: 17288512	2007
The use of a quantitative cysteinyl-peptide enrichment technology for high-throughput quantitative proteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 17484113	2007
Quantitative analysis of human immunodeficiency virus type 1-infected CD4+ cell proteome: dysregulated cell cycle progression and nuclear transport coincide with robust virus production. Journal of virology\| PubMed ID: 17494070	2007
Profiling signaling polarity in chemotactic cells. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17494752	2007
A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples. Journal of proteome research\| PubMed ID: 17497906	2007
A genome-scale map of expression for a mouse brain section obtained using voxelation. Physiological genomics\| PubMed ID: 17504947	2007
Accurate mass measurements in proteomics. Chemical reviews\| PubMed ID: 17649984	2007
Capillary-based multi nanoelectrospray emitters: improvements in ion transmission efficiency and implementation with capillary reversed-phase LC-ESI-MS. Analytical chemistry\| PubMed ID: 18044958	2008
Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset. Journal of proteome research\| PubMed ID: 18092746	2008
Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content. Analytical chemistry\| PubMed ID: 18163597	2008
Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson's disease. Journal of proteome research\| PubMed ID: 18173235	2008
Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags. Analytical chemistry\| PubMed ID: 18271604	2008
Quantitative proteome mapping of nitrotyrosines. Methods in enzymology\| PubMed ID: 18423218	2008
DAnTE: a statistical tool for quantitative analysis of -omics data. Bioinformatics (Oxford, England)\| PubMed ID: 18453552	2008
Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues. Journal of proteome research\| PubMed ID: 18570455	2008
Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy. Molecular & cellular proteomics : MCP\| PubMed ID: 18632595	2008
Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography. Journal of proteome research\| PubMed ID: 18785766	2008
Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample. Journal of proteome research\| PubMed ID: 19053531	2009
A simple procedure for effective quenching of trypsin activity and prevention of 18O-labeling back-exchange. Journal of proteome research\| PubMed ID: 19222237	2009
Dual spatial maps of transcript and protein abundance in the mouse brain. Expert review of proteomics\| PubMed ID: 19489697	2009
An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells. Journal of proteome research\| PubMed ID: 19534553	2009
A statistical framework for protein quantitation in bottom-up MS-based proteomics. Bioinformatics (Oxford, England)\| PubMed ID: 19535538	2009
Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry. Methods (San Diego, Calif.)\| PubMed ID: 19654045	2010
Mouse-specific tandem IgY7-SuperMix immunoaffinity separations for improved LC-MS/MS coverage of the plasma proteome. Journal of proteome research\| PubMed ID: 19722698	2009
N-terminal enrichment: developing a protocol to detect specific proteolytic fragments. Journal of biomolecular techniques : JBT\| PubMed ID: 19949699	2009
Endogenous 3,4-dihydroxyphenylalanine and dopaquinone modifications on protein tyrosine: links to mitochondrially derived oxidative stress via hydroxyl radical. Molecular & cellular proteomics : MCP\| PubMed ID: 20124354	2010
Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model. Journal of proteome research\| PubMed ID: 20155936	2010
Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling. Journal of proteome research\| PubMed ID: 20380418	2010
Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface. Molecular & cellular proteomics : MCP\| PubMed ID: 20410378	2011
Sensitive immunoassays of nitrated fibrinogen in human biofluids. Talanta\| PubMed ID: 20441955	2010
Shotgun proteomics identifies proteins specific for acute renal transplant rejection. Proteomics. Clinical applications\| PubMed ID: 20543976	2010
CD90/THY1 is overexpressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc\| PubMed ID: 20562849	2010
Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics. Journal of proteome research\| PubMed ID: 20698492	2010
Clinical microfluidics for neutrophil genomics and proteomics. Nature medicine\| PubMed ID: 20802500	2010
Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences. Journal of proteome research\| PubMed ID: 20812748	2010
Trypsin-catalyzed oxygen-18 labeling for quantitative proteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 21604114	2011
Liquid chromatography-mass spectrometry-based quantitative proteomics. The Journal of biological chemistry\| PubMed ID: 21632532	2011
Identification of c-type heme-containing peptides using nonactivated immobilized metal affinity chromatography resin enrichment and higher-energy collisional dissociation. Analytical chemistry\| PubMed ID: 21740036	2011
Unraveling pancreatic islet biology by quantitative proteomics. Expert review of proteomics\| PubMed ID: 21819304	2011
IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography-mass spectrometry for human plasma proteomics biomarker discovery. Methods (San Diego, Calif.)\| PubMed ID: 21925605	2012
Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size. Proteomics\| PubMed ID: 21956884	2011
18O-labeled proteome reference as global internal standards for targeted quantification by selected reaction monitoring-mass spectrometry. Molecular & cellular proteomics : MCP\| PubMed ID: 21988777	2011
Mapping N-linked glycosylation sites in the secretome and whole cells of Aspergillus niger using hydrazide chemistry and mass spectrometry. Journal of proteome research\| PubMed ID: 22136231	2012
Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications. Analytical chemistry\| PubMed ID: 22339560	2012
Identification of phosphorylated butyrylcholinesterase in human plasma using immunoaffinity purification and mass spectrometry. Analytica chimica acta\| PubMed ID: 22444575	2012
Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics. Proteomics\| PubMed ID: 22577010	2012
Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests. Journal of proteomics\| PubMed ID: 22846433	2012
Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22949669	2012
In-source fragmentation and the sources of partially tryptic peptides in shotgun proteomics. Journal of proteome research\| PubMed ID: 23268687	2013
Quantitative Site-specific Reactivity Profiling of S-nitrosylation in Mouse Skeletal Muscle Using Cysteinyl Peptide Enrichment Coupled with Mass Spectrometry. Free radical biology & medicine\| PubMed ID: 23277143	2012
Liver-Derived Systemic Factors Drive Î² Cell Hyperplasia in Insulin-Resistant States. Cell reports\| PubMed ID: 23375376	2013
Synthesis and application of an environmentally insensitive Cy3-based arsenical fluorescent probe to identify adaptive microbial responses involving proximal dithiol oxidation. Journal of the American Chemical Society\| PubMed ID: 23379730	2013
Determination of burn patient outcome by large-scale quantitative discovery proteomics. Critical care medicine\| PubMed ID: 23507713	2013
Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling. Proteomics. Clinical applications\| PubMed ID: 23589343	2013
Evaluation of selected binding domains for the analysis of ubiquitinated proteomes. Journal of the American Society for Mass Spectrometry\| PubMed ID: 23649778	2013
Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion. Journal of proteome research\| PubMed ID: 23763644	2013
Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing. Analytical chemistry\| PubMed ID: 23772796	2013
Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis. Analytical chemistry\| PubMed ID: 24004026	2013
Impact of alg3 gene deletion on growth, development, pigment production, protein secretion, and functions of recombinant Trichoderma reesei cellobiohydrolases in Aspergillus niger. Fungal genetics and biology : FG & B\| PubMed ID: 24076077	2013
A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum. Journal of proteome research\| PubMed ID: 24251762	2014
Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling. Free radical biology & medicine\| PubMed ID: 24333276	2014
The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 24335474	2014
Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications. Nature protocols\| PubMed ID: 24336471	2014
Optimization for peptide sample preparation for urine peptidomics. Clinical proteomics\| PubMed ID: 24568099	2014
High and low doses of ionizing radiation induce different secretome profiles in a human skin model. PloS one\| PubMed ID: 24642900	2014
Detecting differential protein expression in large-scale population proteomics. Bioinformatics (Oxford, England)\| PubMed ID: 24928210	2014
Proteome-wide light/dark modulation of thiol oxidation in cyanobacteria revealed by quantitative site-specific redox proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 25118246	2014
A method to determine lysine acetylation stoichiometries. International journal of proteomics\| PubMed ID: 25143833	2014
Expediting SRM assay development for large-scale targeted proteomics experiments. Journal of proteome research\| PubMed ID: 25145539	2014
Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer. Molecular oncology\| PubMed ID: 25266362	2014
Brain insulin lowers circulating BCAA levels by inducing hepatic BCAA catabolism. Cell metabolism\| PubMed ID: 25307860	2014
Proteomic approaches for site-specific O-GlcNAcylation analysis. Bioanalysis\| PubMed ID: 25411699	2014
Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment. Analytical chemistry\| PubMed ID: 25517423	2015
Perturbations in the urinary exosome in transplant rejection. Frontiers in medicine\| PubMed ID: 25593928	2014
Analytical platform evaluation for quantification of ERG in prostate cancer using protein and mRNA detection methods. Journal of translational medicine\| PubMed ID: 25889691	2015
Compensatory Islet Response to Insulin Resistance Revealed by Quantitative Proteomics. Journal of proteome research\| PubMed ID: 26151086	2015
Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes. Cell metabolism\| PubMed ID: 26244933	2015
The clinical impact of recent advances in LC-MS for cancer biomarker discovery and verification. Expert review of proteomics\| PubMed ID: 26581546	2016
The Measurement of Reversible Redox Dependent Post-translational Modifications and Their Regulation of Mitochondrial and Skeletal Muscle Function. Frontiers in physiology\| PubMed ID: 26635632	2015
Quantitative Profiling of Protein S-Glutathionylation Reveals Redox-Dependent Regulation of Macrophage Function during Nanoparticle-Induced Oxidative Stress. ACS nano\| PubMed ID: 26700264	2016
SerpinB1 Promotes Pancreatic β Cell Proliferation. Cell metabolism\| PubMed ID: 26701651	2016
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays. Clinical chemistry\| PubMed ID: 26719571	2016
SNaPP: Simplified Nanoproteomics Platform for Reproducible Global Proteomic Analysis of Nanogram Protein Quantities. Endocrinology\| PubMed ID: 26745641	2016
Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 26867747	2016
Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences\| PubMed ID: 26868616	2016
9-Fluorenylmethyl (Fm) Disulfides: Biomimetic Precursors for Persulfides. Organic letters\| PubMed ID: 26870874	2016
The current state of the art of quantitative phosphoproteomics and its applications to diabetes research. Expert review of proteomics\| PubMed ID: 26960075	2016
Mining the human urine proteome for monitoring renal transplant injury. Kidney international\| PubMed ID: 27165815	2016
Advances in targeted proteomics and applications to biomedical research. Proteomics\| PubMed ID: 27302376	2016
Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway. Science signaling\| PubMed ID: 27405981	2016
An efficient method for native protein purification in the selected range from prostate cancer tissue digests. Chinese clinical oncology\| PubMed ID: 28061542	2016
Biodegradation of alkaline lignin by L1. Biotechnology for biofuels\| PubMed ID: 28239416	2017
Quantitative proteomic characterization of redox-dependent post-translational modifications on protein cysteines. Molecular bioSystems\| PubMed ID: 28357434	2017
Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes. Environmental microbiology reports\| PubMed ID: 28618201	2017
Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease. The Journal of pathology\| PubMed ID: 28657654	2017
Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer. Scientific data\| PubMed ID: 28722704	2017
Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues. Analytical chemistry\| PubMed ID: 28724286	2017
Advances in microscale separations towards nanoproteomics applications. Journal of chromatography. A\| PubMed ID: 28765000	2017
Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics. Journal of translational medicine\| PubMed ID: 28810879	2017
Functional Enzyme-Based Approach for Linking Microbial Community Functions with Biogeochemical Process Kinetics. Environmental science & technology\| PubMed ID: 28891285	2017
-Nitrosylation inhibits the kinase activity of tomato phosphoinositide-dependent kinase 1 (PDK1). The Journal of biological chemistry\| PubMed ID: 28972151	2017
LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 29116567	2017
Multiplexed targeted mass spectrometry assays for prostate cancer-associated urinary proteins. Oncotarget\| PubMed ID: 29254211	2017
Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells. Nature communications\| PubMed ID: 29491378	2018
Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples. International journal of mass spectrometry\| PubMed ID: 29576737	2018
Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway. Analytical chemistry\| PubMed ID: 29584399	2018
Optimization for Peptide Sample Preparation for Urine Peptidomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 29623538	2018
Urinary Virome Perturbations in Kidney Transplantation. Frontiers in medicine\| PubMed ID: 29725592	2018
Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle. Redox biology\| PubMed ID: 29857311	2018
Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets. Molecular & cellular proteomics : MCP\| PubMed ID: 29941660	2018
Mass spectrometry-based proteomics for system-level characterization of biological responses to engineered nanomaterials. Analytical and bioanalytical chemistry\| PubMed ID: 29947897	2018
Serum biomarkers for diagnosis and prediction of type 1 diabetes. Translational research : the journal of laboratory and clinical medicine\| PubMed ID: 30144424	2018
Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of <1000 mammalian cells. Chemical science\| PubMed ID: 30210768	2018
Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells. Communications biology\| PubMed ID: 30271983	2018
Insulin receptor-mediated signaling regulates pluripotency markers and lineage differentiation. Molecular metabolism\| PubMed ID: 30316806	2018
Nanoproteomics comes of age. Expert review of proteomics\| PubMed ID: 30375896	2018
Proinsulin Secretion Is a Persistent Feature of Type 1 Diabetes. Diabetes care\| PubMed ID: 30530850	2019
Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells. Analytical chemistry\| PubMed ID: 30557009	2019
Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice. Free radical biology & medicine\| PubMed ID: 30597195	2019
Genomics and biochemistry investigation on the metabolic pathway of milled wood and alkali lignin-derived aromatic metabolites of SP-35. Biotechnology for biofuels\| PubMed ID: 30603046	2018
Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells. Analytical chemistry\| PubMed ID: 30843680	2019
Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of strains. Biotechnology for biofuels\| PubMed ID: 30923568	2019
Architecture and subunit arrangement of native AMPA receptors elucidated by cryo-EM. Science (New York, N.Y.)\| PubMed ID: 30975770	2019
Response to Comment on Sims et al. Proinsulin Secretion Is a Persistent Feature of Type 1 Diabetes. Diabetes Care 2019;42:258-264. Diabetes care\| PubMed ID: 31010952	2019
Stable Acinar Progenitor Cell Model Identifies Treacle-Dependent Radioresistance. Radiation research\| PubMed ID: 31141469	2019
The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes. Expert review of proteomics\| PubMed ID: 31232620	2019
Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples. Analytical chemistry\| PubMed ID: 31241912	2019
Increased β-cell proliferation before immune cell invasion prevents progression of type 1 diabetes. Nature metabolism\| PubMed ID: 31423480	2019
High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform. Analytical chemistry\| PubMed ID: 31509397	2019
Comprehensive Proteomics Analysis of Stressed Human Islets Identifies GDF15 as a Target for Type 1 Diabetes Intervention. Cell metabolism\| PubMed ID: 31928885	2020
A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages. NanoImpact\| PubMed ID: 32133426	2020
Evaluation of the cytotoxic and cellular proteome impacts of food-grade TiO (E171) using simulated gastrointestinal digestions and a tri-culture small intestinal epithelial model. NanoImpact\| PubMed ID: 32133427	2020
Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy. Journal of proteome research\| PubMed ID: 32175737	2020
Development of Multiplexed Immuno-N-Terminomics to Reveal the Landscape of Proteolytic Processing in Early Embryogenesis of . Analytical chemistry\| PubMed ID: 32196314	2020
Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling. Journal of proteome research\| PubMed ID: 32407631	2020
Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression. Cancers\| PubMed ID: 32429558	2020
Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice. eLife\| PubMed ID: 32648542
Stochiometric quantification of the thiol redox proteome of macrophages reveals subcellular compartmentalization and susceptibility to oxidative perturbations. Redox biology\| PubMed ID: 32750668	2020
Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. Frontiers in medicine\| PubMed ID: 33072769	2020
Protein thiol oxidation in the rat lung following e-cigarette exposure. Redox biology\| PubMed ID: 33080441	2020
Receptor-Driven ERK Pulses Reconfigure MAPK Signaling and Enable Persistence of Drug-Adapted BRAF-Mutant Melanoma Cells. Cell systems\| PubMed ID: 33113355	2020
Characterization of cellular oxidative stress response by stoichiometric redox proteomics. American journal of physiology. Cell physiology\| PubMed ID: 33264075	2021
Enhancement of polyhydroxyalkanoate production by co-feeding lignin derivatives with glycerol in Pseudomonas putida KT2440. Biotechnology for biofuels\| PubMed ID: 33413621	2021
The Identification of Novel Potential Injury Mechanisms and Candidate Biomarkers in Renal Allograft Rejection by Quantitative Proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 33498143	2014
Corrigendum: Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. Frontiers in medicine\| PubMed ID: 33511148	2020
Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics. Communications biology\| PubMed ID: 33649493	2021
Defective insulin receptor signaling in hPSCs skews pluripotency and negatively perturbs neural differentiation. The Journal of biological chemistry\| PubMed ID: 33667549	2021
Stoichiometric Thiol Redox Proteomics for Quantifying Cellular Responses to Perturbations. Antioxidants (Basel, Switzerland)\| PubMed ID: 33807006	2021
Enhancing Top-Down Proteomics of Brain Tissue with FAIMS. Journal of proteome research\| PubMed ID: 33856812	2021
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss. Journal of proteome research\| PubMed ID: 33900085	2021
A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer. Frontiers in medicine\| PubMed ID: 33928097	2021
Altered β-Cell Prohormone Processing and Secretion in Type 1 Diabetes. Diabetes\| PubMed ID: 33947721	2021
Repetitive diacetyl vapor exposure promotes ubiquitin proteasome stress and precedes bronchiolitis obliterans pathology. Archives of toxicology\| PubMed ID: 34031698	2021
Meta-analysis of peptides to detect protein significance. Statistics and its interface\| PubMed ID: 34055134	2020
Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH. ACS omega\| PubMed ID: 34056417	2021