Davey M. Smith

Department of Medicine, University of California San Diego

Affiliated withUniversity of California San Diego

Research Area

Biography

Davey M. Smith has not added Biography.
If you are Davey M. Smith and would like to personalize this page please email our Author Liaison for assistance.

JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 6	2021

Other Publications

Article	Year
Fatal Saccharomyces cerevisiae aortic graft infection. Journal of clinical microbiology\| PubMed ID: 12089311	2002
Clade B HIV-1 superinfection with wild-type virus after primary infection with drug-resistant clade B virus. AIDS (London, England)\| PubMed ID: 12700477	2003
HIV drug resistance acquired through superinfection. AIDS (London, England)\| PubMed ID: 16052079	2005
Genetic attributes of cerebrospinal fluid-derived HIV-1 env. Brain : a journal of neurology\| PubMed ID: 16735456	2006
Lack of neutralizing antibody response to HIV-1 predisposes to superinfection. Virology\| PubMed ID: 16962152	2006
Characteristics of recently HIV-infected men who use the Internet to find male sex partners and sexual practices with those partners. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 17019370	2006
Serosorting can potentially increase HIV transmissions. AIDS (London, England)\| PubMed ID: 17502737	2007
Physicians' attitudes toward homosexuality and HIV: survey of a California Medical Society- revisited (PATHH-II). Journal of homosexuality\| PubMed ID: 17594969	2007
Comparison of algorithms that interpret genotypic HIV-1 drug resistance to determine the prevalence of transmitted drug resistance. AIDS (London, England)\| PubMed ID: 18427201	2008
Active duty military personnel presenting for care at a Gay Men's Health Clinic. Journal of homosexuality\| PubMed ID: 18825864	2008
A public health model for the molecular surveillance of HIV transmission in San Diego, California. AIDS (London, England)\| PubMed ID: 19098493	2009
Pleocytosis is associated with disruption of HIV compartmentalization between blood and cerebral spinal fluid viral populations. Virology\| PubMed ID: 19100592	2009
Are all subtypes created equal? The effectiveness of antiretroviral therapy against non-subtype B HIV-1. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 19331584	2009
A novel codon insert in protease of clade B HIV type 1. AIDS research and human retroviruses\| PubMed ID: 19397401	2009
The use of pooled viral load testing to identify antiretroviral treatment failure. AIDS (London, England)\| PubMed ID: 19730348	2009
Select resistance-associated mutations in blood are associated with lower CSF viral loads and better neuropsychological performance. Virology\| PubMed ID: 19762060	2009
Pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 19770802	2010
Mitochondrial injury and cognitive function in HIV infection and methamphetamine use. AIDS (London, England)\| PubMed ID: 26807965	2016
Malaria diagnosis by a polymerase chain reaction-based assay using a pooling strategy. The American journal of tropical medicine and hygiene\| PubMed ID: 19861605	2009
Gene expression before HAART initiation predicts HIV-infected individuals at risk of poor CD4+ T-cell recovery. AIDS (London, England)\| PubMed ID: 19952713	2010
Protease polymorphisms in HIV-1 subtype CRF01_AE represent selection by antiretroviral therapy and host immune pressure. AIDS (London, England)\| PubMed ID: 20009919	2010
Evaluation of an HIV nucleic acid testing program with automated Internet and voicemail systems to deliver results. Annals of internal medicine\| PubMed ID: 20547906	2010
The relatedness of HIV epidemics in the United States-Mexico border region. AIDS research and human retroviruses\| PubMed ID: 20977301	2010
Evaluation of pooled rapid HIV antibody screening of patients admitted to a San Diego Hospital. Journal of virological methods\| PubMed ID: 21513744	2011
Detection of minority resistance during early HIV-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants. Journal of virology\| PubMed ID: 21632754	2011
HIV-1 reverse transcriptase nucleotide substitutions in subtype C-infected, drug-naive, and treatment-experienced patients in South India. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 21876445	2011
Clinical, virologic, and immunologic correlates of HIV-1 intraclade B dual infection among men who have sex with men. AIDS (London, England)\| PubMed ID: 22045341	2012
The price of tenofovir-emtricitabine undermines the cost-effectiveness and advancement of pre-exposure prophylaxis. AIDS (London, England)\| PubMed ID: 22067201	2011
Reverse transcriptase substitution at codons 208 and 228 among treatment-experienced HIV-1 subtype-C-infected Indian patients is strongly associated with thymidine analogue mutations. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 22245718	2012
Genetic features of cerebrospinal fluid-derived subtype B HIV-1 tat. Journal of neurovirology\| PubMed ID: 22528397	2012
A combined screening platform for HIV treatment failure and resistance. PloS one\| PubMed ID: 22563383	2012
Herpes viruses and HIV-1 drug resistance mutations influence the virologic and immunologic milieu of the male genital tract. AIDS (London, England)\| PubMed ID: 22739399	2013
Correlates of HIV and malaria co-infection in Southern India. Malaria journal\| PubMed ID: 22943054	2012
Impact of seminal cytomegalovirus replication on HIV-1 dynamics between blood and semen. Journal of medical virology\| PubMed ID: 22997072	2012
Higher HIV-1 genetic diversity is associated with AIDS and neuropsychological impairment. Virology\| PubMed ID: 22999095	2012
Sexual transmission of predicted CXCR4-tropic HIV-1 likely originating from the source partner's seminal cells. Virology\| PubMed ID: 23040890	2012
Role of seminal shedding of herpesviruses in HIV Type 1 Transmission. The Journal of infectious diseases\| PubMed ID: 23148284	2013
Cytomegalovirus DNA in semen and blood is associated with higher levels of proviral HIV DNA. The Journal of infectious diseases\| PubMed ID: 23275608	2013
Enhanced CD4+ T-cell recovery with earlier HIV-1 antiretroviral therapy. The New England journal of medicine\| PubMed ID: 23323898	2013
Etravirine in CSF is highly protein bound. The Journal of antimicrobial chemotherapy\| PubMed ID: 23335197	2013
Using ultradeep pyrosequencing to study HIV-1 coreceptor usage in primary and dual infection. The Journal of infectious diseases\| PubMed ID: 23599311	2013
Reply to Mounzer and DiNubile. The Journal of infectious diseases\| PubMed ID: 23667136	2013
High prevalence of hepatitis delta virus among patients with chronic hepatitis B virus infection and HIV-1 in an intermediate hepatitis B virus endemic region. Journal of the International Association of Providers of AIDS Care\| PubMed ID: 23722085	2014
HIV-1 clade B pol evolution following primary infection. PloS one\| PubMed ID: 23840830	2013
Simulation of pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection in Seoul, South Korea. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 23924640	2013
Virologic correlates of anti-CMV IgG levels in HIV-1-infected men. The Journal of infectious diseases\| PubMed ID: 23964106	2014
Dual-mixed HIV-1 coreceptor tropism and HIV-associated neurocognitive deficits. Journal of neurovirology\| PubMed ID: 24078557	2013
Antibody response to Achromobacter xylosoxidans during HIV infection is associated with lower CD4 levels and increased lymphocyte activation. Clinical and vaccine immunology : CVI\| PubMed ID: 24173027	2014
Gut Lactobacillales are associated with higher CD4 and less microbial translocation during HIV infection. AIDS (London, England)\| PubMed ID: 24180001	2013
Pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection in Seoul, South Korea. Scandinavian journal of infectious diseases\| PubMed ID: 24228824	2014
Incidence and prevalence of intrasubtype HIV-1 dual infection in at-risk men in the United States. The Journal of infectious diseases\| PubMed ID: 24273040	2014
Predictors of virologic response in persons who start antiretroviral therapy during recent HIV infection. AIDS (London, England)\| PubMed ID: 24401640	2014
The Use of High Performance Liquid Chromatography to Speciate and Characterize the Epidemiology of Mycobacteria. Laboratory medicine\| PubMed ID: 24443588	2011
HIV-associated neurocognitive disorder in HIV-infected Koreans: the Korean NeuroAIDS Project. HIV medicine\| PubMed ID: 24580888	2014
Mathematical modeling of HIV prevention measures including pre-exposure prophylaxis on HIV incidence in South Korea. PloS one\| PubMed ID: 24662776	2014
Short communication: prospective comparison of qualitative versus quantitative polymerase chain reaction for monitoring virologic treatment failure in HIV-infected patients. AIDS research and human retroviruses\| PubMed ID: 24724838	2014
Pre-exposure prophylaxis accessibility research and evaluation (PrEPARE Study). AIDS and behavior\| PubMed ID: 25017425	2014
IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform. PLoS computational biology\| PubMed ID: 25254639	2014
HIV-1 neutralizing antibody response and viral genetic diversity characterized with next generation sequencing. Virology\| PubMed ID: 25463602	2015
Next generation sequencing improves detection of drug resistance mutations in infants after PMTCT failure. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology\| PubMed ID: 25542470	2015
Gene-wide identification of episodic selection. Molecular biology and evolution\| PubMed ID: 25701167	2015
The Sordid Affair Between Human Herpesvirus and HIV. The Journal of infectious diseases\| PubMed ID: 25748324	2015
Short Communication: Increase of HIV-1 K103N Transmitted Drug Resistance and Its Association with Efavirenz Use in South Korea. AIDS research and human retroviruses\| PubMed ID: 25826122	2015
Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis. PLoS medicine\| PubMed ID: 25849352	2015
Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 26129754	2015
Seminal Shedding of CMV and HIV Transmission among Men Who Have Sex with Men. International journal of environmental research and public health\| PubMed ID: 26198239	2015
Methamphetamine Use in HIV-infected Individuals Affects T-cell Function and Viral Outcome during Suppressive Antiretroviral Therapy. Scientific reports\| PubMed ID: 26299251	2015
Subtype associations with HIV-associated neurocognitive disorder in China. Journal of neurovirology\| PubMed ID: 26306690	2016
HIV migration between blood plasma and cellular subsets before and after HIV therapy. Journal of medical virology\| PubMed ID: 26348372	2016
Cell-free mitochondrial DNA in CSF is associated with early viral rebound, inflammation, and severity of neurocognitive deficits in HIV infection. Journal of neurovirology\| PubMed ID: 26428514	2016
What Can We Learn From Measles? No New HIV Infections. Topics in antiviral medicine\| PubMed ID: 26518393	2015
Clear Links Between Starting Methamphetamine and Increasing Sexual Risk Behavior: A Cohort Study Among Men Who Have Sex With Men. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 26536321	2016
No evidence of posttreatment control after early initiation of antiretroviral therapy. AIDS (London, England)\| PubMed ID: 26544575	2015
Circulating HIV DNA Correlates With Neurocognitive Impairment in Older HIV-infected Adults on Suppressive ART. Scientific reports\| PubMed ID: 26603568	2015
HIV Transmission Networks in the San Diego-Tijuana Border Region. EBioMedicine\| PubMed ID: 26629540	2015
Timing Matters - Influenza Vaccination to HIV-Infected Patients. HIV medicine\| PubMed ID: 26810556	2016
Signs or Symptoms of Acute HIV Infection in a Cohort Undergoing Community-Based Screening. Emerging infectious diseases\| PubMed ID: 26890854	2016
Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals. Journal of medical virology\| PubMed ID: 26990771	2016
Characteristics of Resting-State Functional Connectivity in HIV-Associated Neurocognitive Disorder. PloS one\| PubMed ID: 27104345	2016
A practical online tool to estimate antiretroviral coverage for HIV infected and susceptible populations needed to reduce local HIV epidemics. Scientific reports\| PubMed ID: 27337983	2016
The dynamics of the HIV epidemic among men who have sex with men (MSM) from 2005 to 2012 in Shenzhen, China. Scientific reports\| PubMed ID: 27352965	2016
First Appearance of HIV-1 CRF07_BC and CRF08_BC Outside China. AIDS research and human retroviruses\| PubMed ID: 27392826	2017
Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. JAMA\| PubMed ID: 27404187	2016
Standard vaccines increase HIV-1 transcription during antiretroviral therapy. AIDS (London, England)\| PubMed ID: 27427877	2016
Screening for acute HIV infection in community-based settings: Cost-effectiveness and impact on transmissions. The Journal of infection\| PubMed ID: 27521468	2016
HIV-associated neurocognitive disorder is associated with HIV-1 dual infection. AIDS (London, England)\| PubMed ID: 27536983	2016
Can research at the end of life be a useful tool to advance HIV cure? AIDS (London, England)\| PubMed ID: 27755112	2017
Partner services in adults with acute and early HIV infection. AIDS (London, England)\| PubMed ID: 27831950	2017
Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HI... PLoS pathogens\| PubMed ID: 28046096	2017
Social and Genetic Networks of HIV-1 Transmission in New York City. PLoS pathogens\| PubMed ID: 28068413	2017
Increased HIV-1 superinfection risk in carriers of specific human leukocyte antigen alleles. AIDS (London, England)\| PubMed ID: 28244954	2017
Intrasubtype B HIV-1 Superinfection Correlates with Delayed Neutralizing Antibody Response. Journal of virology\| PubMed ID: 28615205	2017
No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men. Journal of virology\| PubMed ID: 28794047	2017
Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc. Journal of virology\| PubMed ID: 29142136	2018
HIV, Hepatitis B Virus, and Hepatitis C Virus Prevalence Among High-Risk Populations in South India. AIDS research and human retroviruses\| PubMed ID: 29161880	2018
Temporal variation in HIV-specific IgG subclass antibodies during acute infection differentiates spontaneous controllers from chronic progressors. AIDS (London, England)\| PubMed ID: 29239894	2018
Occult HBV infection in HIV-infected adults and evaluation of pooled NAT for HBV. Journal of viral hepatitis\| PubMed ID: 29316078	2018
Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society-USA Panel. JAMA\| PubMed ID: 30043070	2018
Challenges in Quantifying Cytosine Methylation in the HIV Provirus. mBio\| PubMed ID: 30670613	2019
Mechanism of Action of Methotrexate Against Zika Virus. Viruses\| PubMed ID: 30974762	2019
Primary Incidence of Hepatitis C Virus Infection Among HIV-Infected Men Who Have Sex With Men in San Diego, 2000-2015. Open forum infectious diseases\| PubMed ID: 31041355	2019
Proliferative memory SAMHD1low CD4+ T cells harbour high levels of HIV-1 with compartmentalized viral populations. PLoS pathogens\| PubMed ID: 31220191	2019
Bacteremia and Skin Infections in Four Patients Caused by -Like Organisms. Open forum infectious diseases\| PubMed ID: 31338379	2017
Grindr Users Take More Risks, but Are More Open to Human Immunodeficiency Virus (HIV) Pre-exposure Prophylaxis: Could This Dating App Provide a Platform for HIV Prevention Outreach? Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 31677383	2020
HIV persists throughout deep tissues with repopulation from multiple anatomical sources. The Journal of clinical investigation\| PubMed ID: 31910162	2020
Perceptions of Next-of-Kin/Loved Ones About Last Gift Rapid Research Autopsy Study Enrolling People with HIV/AIDS at the End of Life: A Qualitative Interview Study. AIDS research and human retroviruses\| PubMed ID: 32449624	2020
"My Death Will Not [Be] in Vain": Testimonials from Last Gift Rapid Research Autopsy Study Participants Living with HIV at the End of Life. AIDS research and human retroviruses\| PubMed ID: 32449625	2020
Do Sexual Minorities Face Greater Risk for Sexual Harassment, Ever and at School, in Adolescence?: Findings From a 2019 Cross-Sectional Study of U.S. Adults. Journal of interpersonal violence\| PubMed ID: 32571176	2020
No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract. Open forum infectious diseases\| PubMed ID: 32875005	2020
Cost-effectiveness analysis of pre-exposure prophylaxis for the prevention of HIV in men who have sex with men in South Korea: a mathematical modelling study. Scientific reports\| PubMed ID: 32884082	2020
Comparative Circulation Dynamics of the Five Main HIV Types in China. Journal of virology\| PubMed ID: 32938762	2020
What the HIV Pandemic Experience Can Teach the United States About the COVID-19 Response. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 33027152	2021
Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 33079188	2020
High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 33136738	2020
Effective HIV Molecular Surveillance Requires Identification of Incident Cases of Infection. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 33588434	2021
RAMIC: Design of a randomized, double-blind, placebo-controlled trial to evaluate the efficacy of ramipril in patients with COVID-19. Contemporary clinical trials\| PubMed ID: 33631357	2021
Monitoring HIV testing and pre-exposure prophylaxis information seeking by combining digital and traditional data. BMC infectious diseases\| PubMed ID: 33632140	2021