Alan J. Simmons

Department of Cell and Developmental Biology, Vanderbilt University

Affiliated withVanderbilt University

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 3	2021

Other Publications

Article	Year
Multiscale analysis of the murine intestine for modeling human diseases. Integrative biology : quantitative biosciences from nano to macro\| PubMed ID: 26040649	2015
Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF-α-induced apoptosis in vivo. Molecular systems biology\| PubMed ID: 26519361	2015
Impaired coordination between signaling pathways is revealed in human colorectal cancer using single-cell mass cytometry of archival tissue blocks. Science signaling\| PubMed ID: 27729552	2016
Deciphering tumor heterogeneity from FFPE tissues: Its promise and challenges. Molecular & cellular oncology\| PubMed ID: 28197533	2017
The ErbB3 receptor tyrosine kinase negatively regulates Paneth cells by PI3K-dependent suppression of Atoh1. Cell death and differentiation\| PubMed ID: 28304405	2017
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut. Cell systems\| PubMed ID: 29153838	2018
Quantitative assessment of cell population diversity in single-cell landscapes. PLoS biology\| PubMed ID: 30346945	2018
Single-Cell Mass Cytometry of Archived Human Epithelial Tissue for Decoding Cancer Signaling Pathways. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 30465206	2019
Neurog3-Independent Methylation Is the Earliest Detectable Mark Distinguishing Pancreatic Progenitor Identity. Developmental cell\| PubMed ID: 30620902	2019
Novel kidney dissociation protocol and image-based flow cytometry facilitate improved analysis of injured proximal tubules. American journal of physiology. Renal physiology\| PubMed ID: 30759021	2019
High dietary salt-induced dendritic cell activation underlies microbial dysbiosis-associated hypertension. JCI insight\| PubMed ID: 31162138	2019
Heterogeneity and dynamics of active Kras-induced dysplastic lineages from mouse corpus stomach. Nature communications\| PubMed ID: 31804471	2019
Coregulator Sin3a Promotes Postnatal Murine β-Cell Fitness by Regulating Genes in Ca Homeostasis, Cell Survival, Vesicle Biosynthesis, Glucose Metabolism, and Stress Response. Diabetes\| PubMed ID: 32245798	2020
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms. BMC genomics\| PubMed ID: 32616006	2020
An interspecies translation model implicates integrin signaling in infliximab-resistant inflammatory bowel disease. Science signaling\| PubMed ID: 32753478	2020
Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation. Gastroenterology\| PubMed ID: 32828819	2020
Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms. NPJ biofilms and microbiomes\| PubMed ID: 32973205	2020
Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ. Gastroenterology\| PubMed ID: 33010250	2021