AR

Alisdair R. Fernie

Molekulare Pflanzenphysiologie, Max-Planck-Institut

Affiliated withMax-Planck-InstitutMax-Planck-Institute of Molecular Plant PhysiologyCenter of Plant Systems Biology and Biotechnology

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 2
Year
Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
Publication title

Cited by 8

2012
2021

Other Publications

Article
Year

Journal of experimental botany| PubMed ID: 22516796

2012
2003
2005
2006

The Plant cell| PubMed ID: 16766694

2006

Journal of experimental botany| PubMed ID: 16798850

2006

Plant molecular biology| PubMed ID: 16915524

2006

The Plant journal : for cell and molecular biology| PubMed ID: 16923016

2006

Trends in plant science| PubMed ID: 16949327

2006

Plant physiology| PubMed ID: 16950860

2006

Plant physiology| PubMed ID: 16963520

2006

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 17035678

2007

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 17035681

2007
2006

Plant physiology| PubMed ID: 17122072

2007

The New phytologist| PubMed ID: 22548389

2012

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 17148605

2006
2006

BMC bioinformatics| PubMed ID: 17176458

2006

Plant molecular biology| PubMed ID: 17211513

2007

Plant physiology| PubMed ID: 17277092

2007

Bioinformatics (Oxford, England)| PubMed ID: 17344242

2007

Nature protocols| PubMed ID: 17406261

2006

Current opinion in plant biology| PubMed ID: 17434793

2007

Plant physiology| PubMed ID: 17449643

2007

The Plant journal : for cell and molecular biology| PubMed ID: 17461782

2007

Journal of experimental botany| PubMed ID: 17463052

2007

Plant physiology| PubMed ID: 17468208

2007

Plant physiology| PubMed ID: 17468211

2007

Phytochemistry| PubMed ID: 17544461

2007

Phytochemistry| PubMed ID: 17804028

2007

Plant physiology| PubMed ID: 17885087

2007

Plant physiology| PubMed ID: 17885090

2007

Plant physiology| PubMed ID: 17921340

2007

The Plant cell| PubMed ID: 17981998

2007

Plant, cell & environment| PubMed ID: 17999659

2008

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18048325

2007

The Biochemical journal| PubMed ID: 18062772

2008

Trends in plant science| PubMed ID: 18155636

2008

Physiologia plantarum| PubMed ID: 18251856

2008

Journal of experimental botany| PubMed ID: 18252705

2008

Journal of experimental botany| PubMed ID: 18256046

2008

The New phytologist| PubMed ID: 18266616

2008

Plant physiology| PubMed ID: 18287487

2008
2008

Plant physiology| PubMed ID: 18337490

2008

Plant physiology| PubMed ID: 18359839

2008
2008
2008

Physiologia plantarum| PubMed ID: 18494735

2008

The Plant journal : for cell and molecular biology| PubMed ID: 18494854

2008

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18653757

2008

Annals of botany| PubMed ID: 18660497

2009

Plant physiology| PubMed ID: 18715960

2008

Plant & cell physiology| PubMed ID: 18772187

2008
2008
2008

Plant physiology| PubMed ID: 18842826

2008

Plant physiology| PubMed ID: 18923018

2008

The Plant cell| PubMed ID: 18952776

2008

The Plant cell| PubMed ID: 18978034

2008

Plant physiology| PubMed ID: 18987213

2009

Trends in genetics : TIG| PubMed ID: 19027981

2009
2009

Plant, cell & environment| PubMed ID: 19054347

2009

Plant physiology| PubMed ID: 19118125

2009

Phytochemistry| PubMed ID: 19285697

2009

The Plant journal : for cell and molecular biology| PubMed ID: 19302417

2009

Journal of experimental botany| PubMed ID: 19346240

2009

Plant methods| PubMed ID: 19393072

2009

Plant physiology| PubMed ID: 19429607

2009
2009
2009

Phytochemistry| PubMed ID: 19473680

2009

The Plant journal : for cell and molecular biology| PubMed ID: 21235645

2011
Starch as a major integrator in the regulation of plant growth.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 19506259

2009

Physiologia plantarum| PubMed ID: 19558416

2009

The Plant journal : for cell and molecular biology| PubMed ID: 19619161

2009

The Biochemical journal| PubMed ID: 19698086

2009
2009
2009

Metabolomics : Official journal of the Metabolomic Society| PubMed ID: 19718268

2009

The Plant cell| PubMed ID: 19737978

2009

The Journal of biological chemistry| PubMed ID: 19745225

2009
2009

The Plant journal : for cell and molecular biology| PubMed ID: 19807880

2010

Metabolomics : Official journal of the Metabolomic Society| PubMed ID: 19816536

2008

Molecular plant| PubMed ID: 19825614

2009

Molecular plant| PubMed ID: 19825624

2009

The Plant journal : for cell and molecular biology| PubMed ID: 19845879

2010
2010

Phytochemistry| PubMed ID: 19853265

2010

Plant physiology| PubMed ID: 19906889

2010

Trends in plant science| PubMed ID: 19913451

2010

Trends in plant science| PubMed ID: 20005151

2010

Molecular plant| PubMed ID: 20035036

2010
2010

Plant physiology| PubMed ID: 20107025

2010

Plant physiology| PubMed ID: 20118271

2010

Plant physiology| PubMed ID: 20118274

2010

Trends in plant science| PubMed ID: 20138563

2010

Plant physiology| PubMed ID: 20190096

2010

The Plant journal : for cell and molecular biology| PubMed ID: 20202167

2010

The Plant journal : for cell and molecular biology| PubMed ID: 20230486

2010
2010
2010

Trends in plant science| PubMed ID: 20403720

2010

Plant physiology| PubMed ID: 20435740

2010

Amino acids| PubMed ID: 20473773

2010

The Plant cell| PubMed ID: 20501910

2010

Nature protocols| PubMed ID: 20539294

2010

Trends in plant science| PubMed ID: 20554469

2010

The Plant cell| PubMed ID: 20571113

2010
2010

Plant physiology| PubMed ID: 20605913

2010

Molecular plant| PubMed ID: 20675613

2010

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik| PubMed ID: 20680612

2010
2010

The New phytologist| PubMed ID: 20731781

2010

Plant physiology| PubMed ID: 20841452

2010

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik| PubMed ID: 20872209

2011

Molecular plant| PubMed ID: 20926550

2010

The New phytologist| PubMed ID: 20946418

2011

Plant physiology| PubMed ID: 20966153

2011

BMC plant biology| PubMed ID: 21059227

2010

Journal of plant physiology| PubMed ID: 21087810

2011

The Plant journal : for cell and molecular biology| PubMed ID: 21105920

2010

Journal of proteome research| PubMed ID: 21142212

2011

Phytochemistry| PubMed ID: 21146842

2011

Journal of plant physiology| PubMed ID: 21185623

2011

Trends in plant science| PubMed ID: 21185769

2011

Plant physiology| PubMed ID: 21205613

2011

The Plant cell| PubMed ID: 21239646

2011

The Plant journal : for cell and molecular biology| PubMed ID: 21241390

2011
2011

The Plant journal : for cell and molecular biology| PubMed ID: 21288265

2011

The Plant cell| PubMed ID: 21307286

2011

The Plant cell| PubMed ID: 21398570

2011
2011

Proteomics| PubMed ID: 21433289

2011
2011

Phytochemistry| PubMed ID: 21440919

2011

The Plant cell| PubMed ID: 21441431

2011

The Plant journal : for cell and molecular biology| PubMed ID: 21443630

2011
2011

The Plant journal : for cell and molecular biology| PubMed ID: 21466600

2011

Plant, cell & environment| PubMed ID: 21477125

2012

The Plant journal : for cell and molecular biology| PubMed ID: 21501262

2011

Journal of experimental botany| PubMed ID: 21527625

2011

Planta| PubMed ID: 21528417

2011

Journal of plant physiology| PubMed ID: 21529995

2011

Plant physiology| PubMed ID: 21531899

2011

Nature| PubMed ID: 21562560

2011

The Plant journal : for cell and molecular biology| PubMed ID: 21575090

2011

Trends in plant science| PubMed ID: 21622019

2011

Plant physiology| PubMed ID: 21670224

2011

Trends in plant science| PubMed ID: 21684795

2011

The Plant cell| PubMed ID: 21750236

2011

The Plant cell| PubMed ID: 21771932

2011

Plant physiology| PubMed ID: 21788362

2011

Plant physiology| PubMed ID: 21795583

2011

Plant signaling & behavior| PubMed ID: 21847028

2011

The Plant journal : for cell and molecular biology| PubMed ID: 21851430

2011

Plant physiology| PubMed ID: 21865489

2011
2011

Plant physiology| PubMed ID: 21921115

2011

Plant physiology| PubMed ID: 21921116

2011
2011
2011
2011

Planta| PubMed ID: 21979413

2012

Plant physiology| PubMed ID: 22021422

2011
2011

Plant signaling & behavior| PubMed ID: 22112450

2011
2012

Science (New York, N.Y.)| PubMed ID: 22157085

2012
2011

PloS one| PubMed ID: 22174812

2011

Molecular plant| PubMed ID: 22180467

2012

Molecular plant| PubMed ID: 22199237

2012

Journal of plant physiology| PubMed ID: 22226341

2012

Plant physiology| PubMed ID: 22253257

2012
2012

Metabolomics : Official journal of the Metabolomic Society| PubMed ID: 22279429

2012

Journal of experimental botany| PubMed ID: 22291129

2012

The Journal of biological chemistry| PubMed ID: 22334689

2012

The Plant cell| PubMed ID: 22345491

2012

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 22351173

2012

The Plant cell| PubMed ID: 22374394

2012

Plant physiology| PubMed ID: 22422940

2012

The Plant journal : for cell and molecular biology| PubMed ID: 22429648

2012

Molecular plant| PubMed ID: 22442389

2012

Trends in plant science| PubMed ID: 22465020

2012

PLoS genetics| PubMed ID: 22479206

2012

Plant, cell & environment| PubMed ID: 22621197

2012

Frontiers in plant science| PubMed ID: 22639601

2011

Frontiers in plant science| PubMed ID: 22639611

2011

Frontiers in plant science| PubMed ID: 22639645

2012
2011

Trends in plant science| PubMed ID: 22658681

2012

Nucleic acids research| PubMed ID: 22684630

2012

Plant physiology| PubMed ID: 22685169

2012

Frontiers in plant science| PubMed ID: 22701462

2012
The use of metabolomics to dissect plant responses to abiotic stresses.

Cellular and molecular life sciences : CMLS| PubMed ID: 22885821

2012
Co-expression and co-responses: within and beyond transcription.

Frontiers in plant science| PubMed ID: 23162560

2012
2012
2012
2013
2013
2013
2013
Shikimate and phenylalanine biosynthesis in the green lineage.

Frontiers in plant science| PubMed ID: 23543266

2013
2013
2013
2013
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 23803858

2013
2013
2014
2014
2014
2014
2014
Metabolic control of redox and redox control of metabolism in plants.

Antioxidants & redox signaling| PubMed ID: 24960279

2014
2014
2014
2014
2015
A cross-kingdom history.

eLife| PubMed ID: 25872909

2015
2015
2015
2015
2015
2015
2015
2016
2016
2016
2016
2016
2016
2016
2016
2016
2016
2017
2017
2017
2017
2017
2017
2017
2017
Editorial overview: Plant synthetic and systems biology.

Current opinion in biotechnology| PubMed ID: 29033276

2018
2018
Canalization of Tomato Fruit Metabolism.

The Plant cell| PubMed ID: 29093214

2017
2018
2017
2018
2018
2018
2018
2018
Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 29392679

2018
2018
2018
Metabolic regulation of photosynthesis.

Biochemical Society transactions| PubMed ID: 29523770

2018
2018
2018
2018
2018
Metabolomics 20 years on: what have we learned and what hurdles remain?

The Plant journal : for cell and molecular biology| PubMed ID: 29734513

2018
On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress.

Phytochemistry reviews : proceedings of the Phytochemical Society of Europe| PubMed ID: 29755304

2018
2018
2018
Gas Chromatography-Mass Spectrometry-Based C-Labeling Studies in Plant Metabolomics.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 29761430

2018
Carbon Atomic Survey for Identification of Selected Metabolic Fluxes.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 29761431

2018
Targeted LC-MS Analysis for Plant Secondary Metabolites.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 29761438

2018
Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 29761442

2018
2018
2018
2018
2018
2018
On the role of the tricarboxylic acid cycle in plant productivity.

Journal of integrative plant biology| PubMed ID: 29917310

2018
2018
Discriminating the Function(s) of Guard Cell ALMT Channels.

Trends in plant science| PubMed ID: 29937128

2018
2018
2018
2018
2018
2019
2018
2018
2018
2018
2019
2019
2018
How fruit ripening is ENCODEd.

Nature plants| PubMed ID: 30250278

2018
2018
The proof is in the bulb: glycerol influences key stages of lily development.

The Plant journal : for cell and molecular biology| PubMed ID: 30288818

2019
Exploring the Diversity of Plant Metabolism.

Trends in plant science| PubMed ID: 30297176

2019
2018
2018
2018
2019
In vivo detection of protein cysteine sulfenylation in plastids.

The Plant journal : for cell and molecular biology| PubMed ID: 30394608

2019
2019
2018
2019
2019
2019
2019
The metabolic response to drought.

Journal of experimental botany| PubMed ID: 30726961

2019
2019
2019
2019
Crop metabolomics: from diagnostics to assisted breeding.

Metabolomics : Official journal of the Metabolomic Society| PubMed ID: 30830402

2018
2018
2019
2019
2019
2019
2019
2019
2020
2019
2019
2019
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.

Cellular and molecular life sciences : CMLS| PubMed ID: 31250033

2020
2019
Flowers and climate change: a metabolic perspective.

The New phytologist| PubMed ID: 31257600

2019
2019
2019
2019
2019
2020
2019
2019
2019
2020
2019
Passing the Baton: Substrate Channelling in Respiratory Metabolism.

Research (Washington, D.C.)| PubMed ID: 31549022

2018
2020
2020
2020
2020
2019
2019
Assessing durum wheat ear and leaf metabolomes in the field through hyperspectral data.

The Plant journal : for cell and molecular biology| PubMed ID: 31808224

2020
A genetically validated approach for detecting inorganic polyphosphates in plants.

The Plant journal : for cell and molecular biology| PubMed ID: 31816134

2020
Cassava Metabolomics and Starch Quality.

Current protocols in plant biology| PubMed ID: 31834991

2019
2020
Metabolomics should be deployed in the identification and characterization of gene-edited crops.

The Plant journal : for cell and molecular biology| PubMed ID: 31923321

2020
2020
Eating Away at ROS to Regulate Stomatal Opening.

Trends in plant science| PubMed ID: 31932167

2020
A Biostimulant Obtained from the Seaweed Protects from Severe Oxidative Stress.

International journal of molecular sciences| PubMed ID: 31940839

2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
2020
The -dependent signalling pathway coordinates plastid biogenesis with the synthesis of anthocyanins.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences| PubMed ID: 32362259

2020
2020
2020
2020
Outstanding questions in flower metabolism.

The Plant journal : for cell and molecular biology| PubMed ID: 32410253

2020
2020
Conservation and diversification of flavonoid metabolism in the plant kingdom.

Current opinion in plant biology| PubMed ID: 32422532

2020
2020
2020
2020
2020
2020
2020
2020
Editorial overview: Evolution of metabolic diversity.

Current opinion in plant biology| PubMed ID: 32546303

2020
2020
2020
2020
2020
2020
Dissection of the domestication-shaped genetic architecture of lettuce primary metabolism.

The Plant journal : for cell and molecular biology| PubMed ID: 32772408

2020
Coordinating Sulfur Pools under Sulfate Deprivation.

Trends in plant science| PubMed ID: 32800669

2020
2020
Mobile Transposable Elements Shape Plant Genome Diversity.

Trends in plant science| PubMed ID: 32863103

2020
2020
Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner.

The Plant journal : for cell and molecular biology| PubMed ID: 32996222

2020
Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways.

The Plant journal : for cell and molecular biology| PubMed ID: 33001507

2020
2020
2020
2021
Tomato multiomics at aPEELing resolution.

Nature plants| PubMed ID: 33144685

2020
Metabolomic Analysis of Natural Variation in Arabidopsis.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 33175389

2021
Crop breeding - From experience-based selection to precision design.

Journal of plant physiology| PubMed ID: 33202375

2021
2021
2021
2020
Using Metabolomics to Assist Plant Breeding.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 33263901

2021
2020
2020
2021
Integrating multi-omics data for crop improvement.

Journal of plant physiology| PubMed ID: 33360148

2021
2020
2020
2020
2021
2021
2021
2021
2021
2021
2021
2021
2021
2021
2021
2021
2021
Phosphoglycerate dehydrogenase genes differentially affect Arabidopsis metabolism and development.

Plant science : an international journal of experimental plant biology| PubMed ID: 33775368

2021
2020
2021
2021
Evolutionary History of Plant Metabolism.

Annual review of plant biology| PubMed ID: 33848429

2021
2021
2021
2021
Plant biotechnology for sustainable agriculture and food safety.

Journal of plant physiology| PubMed ID: 33872931

2021
2021
2021
2021
2021
2021
Multi-omics analysis of early leaf development in .

Patterns (New York, N.Y.)| PubMed ID: 33982025

2021
2021
2021
2021
Genome-wide association studies: assessing trait characteristics in model and crop plants.

Cellular and molecular life sciences : CMLS| PubMed ID: 34196733

2021
2021
2021
2021
2021
Plants upcycle gene functions to suit their roots.

Trends in plant science| PubMed ID: 34284955

2021