Sridhar Sivasubbu

CSIR-Institute of Genomics and Integrative Biology

Affiliated withCSIR-Institute of Genomics and Integrative Biology

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2022

Other Publications

Article	Year
Proteomic analysis of zebrafish (Danio rerio) embryos exposed to cyclosporine A. Journal of proteomics\| PubMed ID: 22079245	2012
De novo identification of viral pathogens from cell culture hologenomes. BMC research notes\| PubMed ID: 22226071	2012
Antagonism of microRNA function in zebrafish embryos by using locked nucleic acid enzymes (LNAzymes). Chembiochem : a European journal of chemical biology\| PubMed ID: 22315191	2012
High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region. PloS one\| PubMed ID: 22355382	2012
A case for pharmacogenomics in management of cardiac arrhythmias. Indian pacing and electrophysiology journal\| PubMed ID: 22557843	2012
Conceptual approaches for lncRNA drug discovery and future strategies. Expert opinion on drug discovery\| PubMed ID: 22559214	2012
Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity. PloS one\| PubMed ID: 23285103	2012
Systematic transcriptome wide analysis of lncRNA-miRNA interactions. PloS one\| PubMed ID: 23405074	2013
miR-34 is maternally inherited in Drosophila melanogaster and Danio rerio. Nucleic acids research\| PubMed ID: 23470996	2013
A sequence-based variation map of zebrafish. Zebrafish\| PubMed ID: 23590399	2013
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. Database : the journal of biological databases and curation\| PubMed ID: 23846593	2013
Draft Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium tuberculosis East African Indian Strain OSDD271. Genome announcements\| PubMed ID: 23908284	2013
Systematic pharmacogenomics analysis of a Malay whole genome: proof of concept for personalized medicine. PloS one\| PubMed ID: 24009664	2013
Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493. Genome announcements\| PubMed ID: 24201204	2013
Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype. Genome announcements\| PubMed ID: 24265488	2013
Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype. Genome announcements\| PubMed ID: 24265496	2013
Time for the zebrafish ENCODE. Journal of genetics\| PubMed ID: 24371190	2013
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish. PloS one\| PubMed ID: 24391796	2013
Morphological effects of G-quadruplex stabilization using a small molecule in zebrafish. Biochemistry\| PubMed ID: 24476096	2014
Draft Genome Sequence of Urease-Producing Sporosarcina pasteurii with Potential Application in Biocement Production. Genome announcements\| PubMed ID: 24482521	2014
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. Database : the journal of biological databases and curation\| PubMed ID: 24578356	2014
Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. PloS one\| PubMed ID: 24932682	2014
Non-coding RNA based regulation of blood vessel development in zebrafish and relevance to humans. Molecular cytogenetics\| PubMed ID: 24940357	2014
Short stories on zebrafish long noncoding RNAs. Zebrafish\| PubMed ID: 25110965	2014
Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India. Genome announcements\| PubMed ID: 25573926	2015
mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets. Human mutation\| PubMed ID: 25677119	2015
Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India. Genome announcements\| PubMed ID: 25700399	2015
Comparative whole-genome analysis of clinical isolates reveals characteristic architecture of Mycobacterium tuberculosis pangenome. PloS one\| PubMed ID: 25853708	2015
Exome sequencing of patients with histiocytoid cardiomyopathy reveals a de novo NDUFB11 mutation that plays a role in the pathogenesis of histiocytoid cardiomyopathy. American journal of medical genetics. Part A\| PubMed ID: 25921236	2015
Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach. PloS one\| PubMed ID: 26035208	2015
zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs. PloS one\| PubMed ID: 26065909	2015
Case Report: Whole exome sequencing helps in accurate molecular diagnosis in siblings with a rare co-occurrence of paternally inherited 22q12 duplication and autosomal recessive non-syndromi... F1000Research\| PubMed ID: 26594337	2015
Chamber Specific Gene Expression Landscape of the Zebrafish Heart. PloS one\| PubMed ID: 26815362	2016
Aptamer-Assisted Detection of the Altered Expression of Estrogen Receptor Alpha in Human Breast Cancer. PloS one\| PubMed ID: 27043307	2016
Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India. Human genome variation\| PubMed ID: 27081501	2014
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PLoS genetics\| PubMed ID: 27082250	2016
Development of a fluorescent transgenic zebrafish biosensor for sensing aquatic heavy metal pollution. Transgenic research\| PubMed ID: 27120052	2016
Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa. F1000Research\| PubMed ID: 27408687	2016
Egyptian tale from India: application of whole-exome sequencing in diagnosis of atypical familial Mediterranean fever. International journal of rheumatic diseases\| PubMed ID: 28211254	2017
Neuroanatomical demonstration of calbindin 2a- and calbindin 2b-like calcium binding proteins in the early embryonic development of zebrafish: mRNA study. International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience\| PubMed ID: 28396290	2017
Classical autophagy proteins LC3B and ATG4B facilitate melanosome movement on cytoskeletal tracks. Autophagy\| PubMed ID: 28598240	2017
RNA sequencing of db/db mice liver identifies lncRNA H19 as a key regulator of gluconeogenesis and hepatic glucose output. Scientific reports\| PubMed ID: 28814771	2017
Case Report: Whole exome sequencing identifies a novel frameshift insertion c.1325dupT (p.F442fsX2) in the tyrosine kinase domain of gene in a young Indian individual with X-linked agammagl... F1000Research\| PubMed ID: 28928935	2016
Case Report: Application of whole exome sequencing for accurate diagnosis of rare syndromes of mineralocorticoid excess. F1000Research\| PubMed ID: 29067160	2016
Case Report: Whole exome sequencing identifies variation c.2308G>A p.E770K in associated with B- T- NK+ severe combined immunodeficiency. F1000Research\| PubMed ID: 29067161	2016
STIM1 activation of adenylyl cyclase 6 connects Ca and cAMP signaling during melanogenesis. The EMBO journal\| PubMed ID: 29311116	2018
RNA secondary structure profiling in zebrafish reveals unique regulatory features. BMC genomics\| PubMed ID: 29448945	2018
Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts. Mitochondrion\| PubMed ID: 29486245	2019
Whole exome sequencing in a multi-generation family from India reveals a genetic variation c.10C>T (p.Gln4Ter) in keratin 5 gene associated with Dowling-Degos disease. Indian journal of dermatology, venereology and leprology\| PubMed ID: 29600799	2018
Large scale changes in the transcriptome of Eisenia fetida during regeneration. PloS one\| PubMed ID: 30260966	2018
Identification of novel circadian transcripts in the zebrafish retina. The Journal of experimental biology\| PubMed ID: 30446534	2019
Knockdown of calcium-binding calb2a and calb2b genes indicates the key regulator of the early development of the zebrafish, Danio rerio. Brain structure & function\| PubMed ID: 30460553	2019
Methods for Annotation and Validation of Circular RNAs from RNAseq Data. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 30635890	2019
Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 30635891	2019
A genome-wide map of circular RNAs in adult zebrafish. Scientific reports\| PubMed ID: 30837568	2019
A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis. Neurology. Genetics\| PubMed ID: 31086824	2019
Loss of function mutation in the P2X7, a ligand-gated ion channel gene associated with hypertrophic cardiomyopathy. Purinergic signalling\| PubMed ID: 31152337	2019
Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing. Gene\| PubMed ID: 31499127	2019
Saliva microbiome in primary Sjögren's syndrome reveals distinct set of disease-associated microbes. Oral diseases\| PubMed ID: 31514257	2020
Genomics of rare genetic diseases-experiences from India. Human genomics\| PubMed ID: 31554517	2019
pH-controlled histone acetylation amplifies melanocyte differentiation downstream of MITF. EMBO reports\| PubMed ID: 31709752	2020
A Temporal Map of Gene Expression Pattern During Zebrafish Liver Regeneration. Zebrafish\| PubMed ID: 31770088	2020
Role of Tmem163 in zinc-regulated insulin storage of MIN6 cells: Functional exploration of an Indian type 2 diabetes GWAS associated gene. Biochemical and biophysical research communications\| PubMed ID: 31813547	2020
Histone variant dictates fate biasing of neural crest cells to melanocyte lineage. Development (Cambridge, England)\| PubMed ID: 32098766	2020
Maternal vitamin B deficiency in rats alters DNA methylation in metabolically important genes in their offspring. Molecular and cellular biochemistry\| PubMed ID: 32189172	2020
Building the vertebrate codex using the gene breaking protein trap library. eLife\| PubMed ID: 32779569	2020
Spectrum of clinical features and genetic variants in mevalonate kinase (MVK) gene of South Indian families suffering from Hyperimmunoglobulin D Syndrome. PloS one\| PubMed ID: 32822427	2020
Asymptomatic Reinfection in 2 Healthcare Workers From India With Genetically Distinct Severe Acute Respiratory Syndrome Coronavirus 2. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 32964927	2021
Parental Experience of Hematopoietic Stem Cell Transplantation for Children with Primary Immune Deficiency Disorders. Indian journal of pediatrics\| PubMed ID: 33095397	2021
IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes. Nucleic acids research\| PubMed ID: 33095885	2021
A rapid and sensitive method to detect SARS-CoV-2 virus using targeted-mass spectrometry. Journal of proteins and proteomics\| PubMed ID: 33132628	2020
Analysis of the potential impact of genomic variants in global SARS-CoV-2 genomes on molecular diagnostic assays. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 33181329	2021
Asymptomatic reactivation of SARS-CoV-2 in a child with neuroblastoma characterised by whole genome sequencing. IDCases\| PubMed ID: 33288996	2021
DALIA- a comprehensive resource of Disease Alleles in Arab population. PloS one\| PubMed ID: 33439861	2021
Genomic analysis of patients in a South Indian Community with autosomal dominant cortical tremor, myoclonus and epilepsy suggests a founder repeat expansion mutation in the gene. Brain communications\| PubMed ID: 33501421	2021
Chronic systemic exposure to IL6 leads to deregulation of glycolysis and fat accumulation in the zebrafish liver. Biochimica et biophysica acta. Molecular and cell biology of lipids\| PubMed ID: 33582286	2021
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing. PloS one\| PubMed ID: 33596239	2021
Symptomatic reinfection of SARS-CoV-2 with spike protein variant N440K associated with immune escape. Journal of medical virology\| PubMed ID: 33818797	2021
Genome and transcriptome analysis of the mealybug Maconellicoccus hirsutus: Correlation with its unique phenotypes. Genomics\| PubMed ID: 34022346	2021
Genomic survey of SARS-CoV-2 vaccine breakthrough infections in healthcare workers from Kerala, India. The Journal of infection\| PubMed ID: 34044037	2021
LncRNA VEAL2 regulates PRKCB2 to modulate endothelial permeability in diabetic retinopathy. The EMBO journal\| PubMed ID: 34180064	2021
Whole genome sequencing identifies novel structural variant in a large Indian family affected with X-linked agammaglobulinemia. PloS one\| PubMed ID: 34252140	2021
An optimized, amplicon-based approach for sequencing of SARS-CoV-2 from patient samples using COVIDSeq assay on Illumina MiSeq sequencing platforms. STAR protocols\| PubMed ID: 34368787	2021
A genome-wide circular RNA transcriptome in rat. Biology methods & protocols\| PubMed ID: 34527809	2021
Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India. Science (New York, N.Y.)\| PubMed ID: 34648303	2021
SARS-CoV-2 vaccine breakthrough infection following a previous infection in a healthcare worker. The Journal of infection\| PubMed ID: 34678389	2021
Variants of concern responsible for SARS-CoV-2 vaccine breakthrough infections from India. Journal of medical virology\| PubMed ID: 34786733	2022
Genetic epidemiology of autoinflammatory disease variants in Indian population from 1029 whole genomes. Journal, genetic engineering & biotechnology\| PubMed ID: 34905135	2021
Clinical, immunological and genomic characteristics of children with X-linked agammaglobulinemia from Kerala, South India. Human immunology\| PubMed ID: 35074268	2022
An insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project. NAR genomics and bioinformatics\| PubMed ID: 35178516	2022