Martin Eisenacher

Medizinisches Proteom-Center, Ruhr-University Bochum

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 4	2021

Other Publications

Article	Year
Sense and nonsense of pathway analysis software in proteomics. Journal of proteome research\| PubMed ID: 21978018	2011
FE65 regulates and interacts with the Bloom syndrome protein in dynamic nuclear spheres - potential relevance to Alzheimer's disease. Journal of cell science\| PubMed ID: 23572515	2013
Improving the default data analysis workflow for large autoimmune biomarker discovery studies with ProtoArrays. Proteomics\| PubMed ID: 23616427	2013
Redox Proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress. The Journal of biological chemistry\| PubMed ID: 23696645	2013
Individual profiling of circulating tumor cell composition and therapeutic outcome in patients with hepatocellular carcinoma. Translational oncology\| PubMed ID: 23908685	2013
Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures. PloS one\| PubMed ID: 24278130	2013
Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SER... Molecular & cellular proteomics : MCP\| PubMed ID: 24284412	2014
Computational proteomics in the post-identification era. Biochimica et biophysica acta\| PubMed ID: 24315217	2014
Highly immunoreactive IgG antibodies directed against a set of twenty human proteins in the sera of patients with amyotrophic lateral sclerosis identified by protein array. PloS one\| PubMed ID: 24586901	2014
Autoimmune profiling with protein microarrays in clinical applications. Biochimica et biophysica acta\| PubMed ID: 24607371	2014
Developing new methods to answer old and new questions in neurodegenerative diseases: 21(st) Workshop of the HUPO Brain Proteome Project (HBPP) 23-24 January 2014, Honolulu, Hawaii. Proteomics\| PubMed ID: 24753468	2014
The challenge of on-tissue digestion for MALDI MSI- a comparison of different protocols to improve imaging experiments. Analytical and bioanalytical chemistry\| PubMed ID: 25687681	2015
Low-bias phosphopeptide enrichment from scarce samples using plastic antibodies. Scientific reports\| PubMed ID: 26126808	2015
Circulating U2 small nuclear RNA fragments as a diagnostic and prognostic biomarker in lung cancer patients. Journal of cancer research and clinical oncology\| PubMed ID: 26687686	2016
PAA: an R/bioconductor package for biomarker discovery with protein microarrays. Bioinformatics (Oxford, England)\| PubMed ID: 26803161	2016
Flow cytometric characterization of microglia in the offspring of PolyI:C treated mice. Brain research\| PubMed ID: 26872595	2016
Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions. Veterinary research\| PubMed ID: 27716418	2016
Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis. Annals of neurology\| PubMed ID: 28009083	2017
Comprehensive proteomic analysis of Penicillium verrucosum. Proteomics\| PubMed ID: 28267294	2017
The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry. Analytical chemistry\| PubMed ID: 28318237	2017
Spatial and molecular resolution of diffuse malignant mesothelioma heterogeneity by integrating label-free FTIR imaging, laser capture microdissection and proteomics. Scientific reports\| PubMed ID: 28358042	2017
BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication. Journal of biotechnology\| PubMed ID: 28606611	2017
A community proposal to integrate proteomics activities in ELIXIR. F1000Research\| PubMed ID: 28713550	2017
MicroRNA-30c as a novel diagnostic biomarker for primary and secondary B-cell lymphoma of the CNS. Journal of neuro-oncology\| PubMed ID: 29327175	2018
Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry. Journal of proteome research\| PubMed ID: 30207155	2018
The PRIDE database and related tools and resources in 2019: improving support for quantification data. Nucleic acids research\| PubMed ID: 30395289	2019
Direct-acting antivirals-based therapy decreases hepatic fibrosis serum biomarker microfibrillar-associated protein 4 in hepatitis C patients. Clinical and molecular hepatology\| PubMed ID: 30449076	2019
Protein Inference Using PIA Workflows and PSI Standard File Formats. Journal of proteome research\| PubMed ID: 30474983	2019
Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research. PloS one\| PubMed ID: 30496192	2018
Integrated Fourier Transform Infrared Imaging and Proteomics for Identification of a Candidate Histochemical Biomarker in Bladder Cancer. The American journal of pathology\| PubMed ID: 30770125	2019
Noninvasive diagnosis of urothelial cancer in urine using DNA hypermethylation signatures-Gender matters. International journal of cancer\| PubMed ID: 31008534	2019
Monocytes-neutrophils-ratio as predictive marker for failure of first induction therapy in AML. Blood cells, molecules & diseases\| PubMed ID: 31029023	2019
Proteomics Standards Initiative Extended FASTA Format. Journal of proteome research\| PubMed ID: 31081335	2019
Digital droplet PCR-based chimerism analysis for monitoring of hematopoietic engraftment after allogeneic stem cell transplantation. International journal of laboratory hematology\| PubMed ID: 31225701	2019
Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition. Molecular & cellular proteomics : MCP\| PubMed ID: 31699904	2020
Let me infuse this for you - A way to solve the first YPIC challenge. EuPA open proteomics\| PubMed ID: 31890549	2019
CalibraCurve: A Tool for Calibration of Targeted MS-Based Measurements. Proteomics\| PubMed ID: 32086983	2020
Spatial proteomics revealed a CXCL1-dependent crosstalk between the urothelium and relocated macrophages through IL-6 during an acute bacterial infection in the urinary bladder. Mucosal immunology\| PubMed ID: 32112048	2020
Quantitative analysis of proteome dynamics in a mouse model of asthma. Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology\| PubMed ID: 33550702	2021
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings in bioinformatics\| PubMed ID: 33589928	2021
MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB. Journal of proteome research\| PubMed ID: 33724838	2021
Small RNAs as biomarkers to differentiate benign and malign prostate diseases: An alternative for transrectal punch biopsy of the prostate? PloS one\| PubMed ID: 33760831	2021
Important Issues in Planning a Proteomics Experiment: Statistical Considerations of Quantitative Proteomic Data. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950479	2021
Establishing a Custom-Fit Data-Independent Acquisition Method for Label-Free Proteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950500	2021
Computertomography-Based Prediction of Complete Response Following Neoadjuvant Chemoradiotherapy of Locally Advanced Rectal Cancer. Frontiers in oncology\| PubMed ID: 34136378	2021
Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle. Proteomes\| PubMed ID: 34201234	2021
A proteomics sample metadata representation for multiomics integration and big data analysis. Nature communications\| PubMed ID: 34615866	2021
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. Nucleic acids research\| PubMed ID: 34723319	2021
NTRK1/TrkA Signaling in Neuroblastoma Cells Induces Nuclear Reorganization and Intra-Nuclear Aggregation of Lamin A/C. Cancers\| PubMed ID: 34771457	2021