Katrin Marcus

Medizinisches Proteom-Center, Ruhr-University Bochum

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 4	2021

Other Publications

Article	Year
Differential analysis of phosphorylated proteins in resting and thrombin-stimulated human platelets. Analytical and bioanalytical chemistry\| PubMed ID: 12904942	2003
"Does understanding the brain need proteomics and does understanding proteomics need brains?"--Second HUPO HBPP Workshop hosted in Paris. Proteomics\| PubMed ID: 15221752	2004
Two-dimensional polyacrylamide gel electrophoresis for platelet proteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 15308816	2004
Tryptic transpeptidation products observed in proteome analysis by liquid chromatography-tandem mass spectrometry. Proteomics\| PubMed ID: 15759313	2005
Application of fluorescence difference gel electrophoresis saturation labelling for the analysis of microdissected precursor lesions of pancreatic ductal adenocarcinoma. Proteomics\| PubMed ID: 15924292	2005
HUPO BPP Workshop on Mouse Models for Neurodegeneration--Choosing the right models. Proteomics\| PubMed ID: 16127735	2005
5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame. Proteomics\| PubMed ID: 16167371	2005
Pilot study of the Human Proteome Organisation Brain Proteome Project: applying different 2-DE techniques to monitor proteomic changes during murine brain development. Proteomics\| PubMed ID: 16927428	2006
Multidimensional chromatography: a powerful tool for the analysis of membrane proteins in mouse brain. Journal of proteome research\| PubMed ID: 17203954	2007
A new fast method for nanoLC-MALDI-TOF/TOF-MS analysis using monolithic columns for peptide preconcentration and separation in proteomic studies. Journal of proteome research\| PubMed ID: 17269720	2007
The amyloid precursor protein intracellular domain (AICD) as modulator of gene expression, apoptosis, and cytoskeletal dynamics-relevance for Alzheimer's disease. Progress in neurobiology\| PubMed ID: 18603345	2008
Keratin 23, a novel DPC4/Smad4 target gene which binds 14-3-3ε. BMC cancer\| PubMed ID: 21492476	2011
A systems biology approach to dynamic modeling and inter-subject variability of statin pharmacokinetics in human hepatocytes. BMC systems biology\| PubMed ID: 21548957	2011
A53T-alpha-synuclein-overexpression in the mouse nigrostriatal pathway leads to early increase of 14-3-3 epsilon and late increase of GFAP. Journal of neural transmission (Vienna, Austria : 1996)\| PubMed ID: 21960009	2012
Sense and nonsense of pathway analysis software in proteomics. Journal of proteome research\| PubMed ID: 21978018	2011
Transplantation of human umbilical cord blood cells mediated beneficial effects on apoptosis, angiogenesis and neuronal survival after hypoxic-ischemic brain injury in rats. Cell and tissue research\| PubMed ID: 22526623	2012
The amyloid precursor protein (APP) family members are key players in S-adenosylmethionine formation by MAT2A and modify BACE1 and PSEN1 gene expression-relevance for Alzheimer's disease. Molecular & cellular proteomics : MCP\| PubMed ID: 22879628	2012
A ternary complex consisting of AICD, FE65, and TIP60 down-regulates Stathmin1. Biochimica et biophysica acta\| PubMed ID: 22902274	2013
Stepwise isolation of human peripheral erythrocytes, T lymphocytes, and monocytes for blood cell proteomics. Proteomics. Clinical applications\| PubMed ID: 22930584	2012
A combined laser microdissection and mass spectrometry approach reveals new disease relevant proteins accumulating in aggregates of filaminopathy patients. Molecular & cellular proteomics : MCP\| PubMed ID: 23115302	2013
Changes in Interleukin-1 alpha serum levels after transplantation of umbilical cord blood cells in a model of perinatal hypoxic-ischemic brain damage. Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft\| PubMed ID: 23123184	2013
Proteomic analysis of alterations induced by perinatal hypoxic-ischemic brain injury. Journal of proteome research\| PubMed ID: 23153068	2012
Identification and characterization of two distinct PPP1R2 isoforms in human spermatozoa. BMC cell biology\| PubMed ID: 23506001	2013
FE65 regulates and interacts with the Bloom syndrome protein in dynamic nuclear spheres - potential relevance to Alzheimer's disease. Journal of cell science\| PubMed ID: 23572515	2013
Early diagnosis of neurodegenerative diseases - the long awaited Holy Grail and bottleneck of modern brain research - 19th HUPO BPP workshop: May 22-24, 2013, Dortmund, Germany. Proteomics\| PubMed ID: 24108682	2013
Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes. BMC evolutionary biology\| PubMed ID: 24195737	2013
Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SER... Molecular & cellular proteomics : MCP\| PubMed ID: 24284412	2014
Overexpression of the calpain-specific inhibitor calpastatin reduces human alpha-Synuclein processing, aggregation and synaptic impairment in [A30P]αSyn transgenic mice. Human molecular genetics\| PubMed ID: 24619358	2014
Internal ribosomal entry site (IRES) activity generates endogenous carboxyl-terminal domains of Cx43 and is responsive to hypoxic conditions. The Journal of biological chemistry\| PubMed ID: 24872408	2014
Frontiers in neurodegeneration--new insights and prospects--20th HUPO BPP Workshop: 15 September 2013, Yokohama, Japan. Proteomics\| PubMed ID: 24903697	2014
Chromophore composition of the phycobiliprotein Cr-PC577 from the cryptophyte Hemiselmis pacifica. Photosynthesis research\| PubMed ID: 25134685	2014
Identification of a novel human LAP1 isoform that is regulated by protein phosphorylation. PloS one\| PubMed ID: 25461922	2014
The challenge of on-tissue digestion for MALDI MSI- a comparison of different protocols to improve imaging experiments. Analytical and bioanalytical chemistry\| PubMed ID: 25687681	2015
Indirect protein quantification of drug-transforming enzymes using peptide group-specific immunoaffinity enrichment and mass spectrometry. Scientific reports\| PubMed ID: 25737130	2015
Primary Central Nervous System (CNS) Lymphoma B Cell Receptors Recognize CNS Proteins. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 26116512	2015
Low-bias phosphopeptide enrichment from scarce samples using plastic antibodies. Scientific reports\| PubMed ID: 26126808	2015
Amyloid-β as a biomarker for Alzheimer's disease: quantification methods in body fluids. Expert review of proteomics\| PubMed ID: 26153725	2015
Myofibrillar instability exacerbated by acute exercise in filaminopathy. Human molecular genetics\| PubMed ID: 26472074	2015
Nuclear spheres modulate the expression of BEST1 and GADD45G. Cellular signalling\| PubMed ID: 26521045	2016
PAA: an R/bioconductor package for biomarker discovery with protein microarrays. Bioinformatics (Oxford, England)\| PubMed ID: 26803161	2016
Key players in neurodegenerative disorders in focus-New insights into the proteomic profile of Alzheimer's disease, schizophrenia, ALS, and multiple sclerosis-24th HUPO BPP Workshop: Septemb... Proteomics\| PubMed ID: 26872682	2016
Mutant desmin substantially perturbs mitochondrial morphology, function and maintenance in skeletal muscle tissue. Acta neuropathologica\| PubMed ID: 27393313	2016
Membrane tethering of APP c-terminal fragments is a prerequisite for T668 phosphorylation preventing nuclear sphere generation. Cellular signalling\| PubMed ID: 27534516	2016
Validation of molecularly imprinted polymers for side chain selective phosphopeptide enrichment. Journal of chromatography. A\| PubMed ID: 27765418	2016
Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection. Scientific reports\| PubMed ID: 27841354	2016
Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis. Annals of neurology\| PubMed ID: 28009083	2017
Morphological Plasticity of Emerging Purkinje Cells in Response to Exogenous VEGF. Frontiers in molecular neuroscience\| PubMed ID: 28194096	2017
Metabolic profiling of body fluids and multivariate data analysis. MethodsX\| PubMed ID: 28275554	2017
Strategies in relative and absolute quantitative mass spectrometry based proteomics. Biological chemistry\| PubMed ID: 28282288	2017
Spatial and molecular resolution of diffuse malignant mesothelioma heterogeneity by integrating label-free FTIR imaging, laser capture microdissection and proteomics. Scientific reports\| PubMed ID: 28358042	2017
BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication. Journal of biotechnology\| PubMed ID: 28606611	2017
Protective effects on the retina after ranibizumab treatment in an ischemia model. PloS one\| PubMed ID: 28800629	2017
Distinct metabolomic signature in cerebrospinal fluid in early parkinson's disease. Movement disorders : official journal of the Movement Disorder Society\| PubMed ID: 28843022	2017
One gene, two proteins: coordinated production of a copper chaperone by differential transcript formation and translational frameshifting in Escherichia coli. Molecular microbiology\| PubMed ID: 28925527	2017
Molecularly imprinted polymers synthesized via template immobilization on fumed silica nanoparticles for the enrichment of phosphopeptides. Journal of molecular recognition : JMR\| PubMed ID: 29024117	2018
Hsp90-downregulation influences the heat-shock response, innate immune response and onset of oocyte development in nematodes. PloS one\| PubMed ID: 29078207	2017
Autophagy inhibition promotes SNCA/alpha-synuclein release and transfer via extracellular vesicles with a hybrid autophagosome-exosome-like phenotype. Autophagy\| PubMed ID: 29198173	2018
Editorial: Breakthroughs in top-down proteomics. Journal of proteomics\| PubMed ID: 29275042	2018
Label-free identification of myopathological features with coherent anti-Stokes Raman scattering. Muscle & nerve\| PubMed ID: 29663456	2018
Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry. Journal of proteome research\| PubMed ID: 30207155	2018
Landscape of pain in Parkinson's disease: impact of gender differences. Neurological research\| PubMed ID: 30311863	2019
Protein Inference Using PIA Workflows and PSI Standard File Formats. Journal of proteome research\| PubMed ID: 30474983	2019
Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research. PloS one\| PubMed ID: 30496192	2018
Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction. Redox biology\| PubMed ID: 30682706	2019
Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Modulates Proteolysis of LpxC. Frontiers in microbiology\| PubMed ID: 30692974	2018
Integrated Fourier Transform Infrared Imaging and Proteomics for Identification of a Candidate Histochemical Biomarker in Bladder Cancer. The American journal of pathology\| PubMed ID: 30770125	2019
Noninvasive diagnosis of urothelial cancer in urine using DNA hypermethylation signatures-Gender matters. International journal of cancer\| PubMed ID: 31008534	2019
The microRNA miR-375-3p and the Tumor Suppressor NDRG2 are Involved in Sporadic Amyotrophic Lateral Sclerosis. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology\| PubMed ID: 31075191	2019
Effects of 12 Weeks of Hypertrophy Resistance Exercise Training Combined with Collagen Peptide Supplementation on the Skeletal Muscle Proteome in Recreationally Active Men. Nutrients\| PubMed ID: 31091754	2019
IgA autoantibodies against native myelin basic protein in a patient with MS. Neurology(R) neuroimmunology & neuroinflammation\| PubMed ID: 31355305	2019
Human tear fluid proteome dataset for usage as a spectral library and for protein modeling. Data in brief\| PubMed ID: 31372408	2019
CSF Sample Preparation for Data-Independent Acquisition. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 31432406	2019
Co-extraction for Metabolomics and Proteomics from a Single CSF Sample. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 31432423	2019
Chaperones in sporadic inclusion body myositis-Validation of proteomic data. Muscle & nerve\| PubMed ID: 31644823	2020
CRN2 binds to TIMP4 and MMP14 and promotes perivascular invasion of glioblastoma cells. European journal of cell biology\| PubMed ID: 31677819	2019
Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition. Molecular & cellular proteomics : MCP\| PubMed ID: 31699904	2020
A spiked human proteomic dataset from human osteogenic differentiated BMSCs and ASCs for use as a spectral library, for modelling pathways as well as protein mapping. Data in brief\| PubMed ID: 31763404	2019
A metastable subproteome underlies inclusion formation in muscle proteinopathies. Acta neuropathologica communications\| PubMed ID: 31796104	2019
Let me infuse this for you - A way to solve the first YPIC challenge. EuPA open proteomics\| PubMed ID: 31890549	2019
The product PACRG promotes TNF signaling by stabilizing LUBAC. Science signaling\| PubMed ID: 32019898	2020
Blood Contamination in CSF and Its Impact on Quantitative Analysis of Alpha-Synuclein. Cells\| PubMed ID: 32033488	2020
CalibraCurve: A Tool for Calibration of Targeted MS-Based Measurements. Proteomics\| PubMed ID: 32086983	2020
The process of somatic hypermutation increases polyreactivity for central nervous system antigens in primary central nervous system lymphoma. Haematologica\| PubMed ID: 32193251	2021
Multiomic elucidation of a coding 99-mer repeat-expansion skeletal muscle disease. Acta neuropathologica\| PubMed ID: 32451610	2020
miR-129-5p and miR-130a-3p Regulate VEGFR-2 Expression in Sensory and Motor Neurons during Development. International journal of molecular sciences\| PubMed ID: 32481647	2020
Glucocorticoid receptor complexes form cooperatively with the Hsp90 co-chaperones Pp5 and FKBPs. Scientific reports\| PubMed ID: 32612187	2020
Human cerebrospinal fluid data for use as spectral library, for biomarker research. Data in brief\| PubMed ID: 32775566	2020
What Room for Two-Dimensional Gel-Based Proteomics in a Shotgun Proteomics World? Proteomes\| PubMed ID: 32781532	2020
Homozygous expression of the myofibrillar myopathy-associated p.W2710X filamin C variant reveals major pathomechanisms of sarcomeric lesion formation. Acta neuropathologica communications\| PubMed ID: 32887649	2020
How Do the Different Proteomic Strategies Cope with the Complexity of Biological Regulations in a Multi-Omic World? Critical Appraisal and Suggestions for Improvements. Proteomes\| PubMed ID: 32899323	2020
A patient-based model of RNA mis-splicing uncovers treatment targets in Parkinson's disease. Science translational medicine\| PubMed ID: 32908004	2020
The first versatile human iPSC-based model of ectopic virus induction allows new insights in RNA-virus disease. Scientific reports\| PubMed ID: 33033381	2020
New Approaches to Critical Illness Polyneuromyopathy: High-Resolution Neuromuscular Ultrasound Characteristics and Cytokine Profiling. Neurocritical care\| PubMed ID: 33236290	2021
Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson's Disease. Cells\| PubMed ID: 33276480	2020
MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB. Journal of proteome research\| PubMed ID: 33724838	2021
Lysine 53 Acetylation of Cytochrome in Prostate Cancer: Warburg Metabolism and Evasion of Apoptosis. Cells\| PubMed ID: 33916826	2021
MicroRNAs from extracellular vesicles as a signature for Parkinson's disease. Clinical and translational medicine\| PubMed ID: 33931970	2021
Good Old-Fashioned Protein Concentration Determination by Amino Acid Analysis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950480	2021
Protein Quantification Using the "Rapid Western Blot" Approach. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950481	2021
Proteome Analysis with Classical 2D-PAGE. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950483	2021
Differential Proteome Analysis Using 2D-DIGE. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950485	2021
Quantitative Mass Spectrometry-Based Proteomics: An Overview. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950486	2021
Establishing a Custom-Fit Data-Independent Acquisition Method for Label-Free Proteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950500	2021
HSP-90/kinase complexes are stabilized by the large PPIase FKB-6. Scientific reports\| PubMed ID: 34117308	2021
Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle. Proteomes\| PubMed ID: 34201234	2021
Rat retinae data for use as spectral library, for pathway remodeling as well as protein mapping. Data in brief\| PubMed ID: 34222568	2021
FLNC-Associated Myofibrillar Myopathy: New Clinical, Functional, and Proteomic Data. Neurology. Genetics\| PubMed ID: 34235269	2021
The β-Subunit of Voltage-Gated Calcium Channels Regulates Cardiomyocyte Hypertrophy. Frontiers in cardiovascular medicine\| PubMed ID: 34307509	2021
N471D WASH complex subunit strumpellin knock-in mice display mild motor and cardiac abnormalities and BPTF and KLHL11 dysregulation in brain tissue. Neuropathology and applied neurobiology\| PubMed ID: 34312900	2021
CSF Diagnostics: A Potentially Valuable Tool in Neurodegenerative and Inflammatory Disorders Involving Motor Neurons: A Review. Diagnostics (Basel, Switzerland)\| PubMed ID: 34573864	2021
Nematode CDC-37 and DNJ-13 form complexes and can interact with HSP-90. Scientific reports\| PubMed ID: 34725424	2021