Sixue Chen

Plant Molecular and Cellular Biology Program, University of Florida

Affiliated withUniversity of Florida University of Florida

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 50	2012
Publication title Cited by 29	2018

Other Publications

Article	Year
Composition and content of glucosinolates in developing Arabidopsis thaliana. Planta\| PubMed ID: 11925040	2002
CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 12609033	2003
Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. The Plant journal : for cell and molecular biology\| PubMed ID: 12969422	2003
Arabidopsis thaliana glutamate-cysteine ligase: functional properties, kinetic mechanism, and regulation of activity. The Journal of biological chemistry\| PubMed ID: 15180996	2004
Rapid protein identification using direct infusion nanoelectrospray ionization mass spectrometry. Proteomics\| PubMed ID: 16294305	2006
Cell wall proteome in the maize primary root elongation zone. I. Extraction and identification of water-soluble and lightly ionically bound proteins. Plant physiology\| PubMed ID: 16377746	2006
The cassava (Manihot esculenta Crantz) root proteome: protein identification and differential expression. Proteomics\| PubMed ID: 16421938	2006
Characterization of the maize xylem sap proteome. Journal of proteome research\| PubMed ID: 16602704	2006
Additional freeze hardiness in wheat acquired by exposure to -3 degreesC is associated with extensive physiological, morphological, and molecular changes. Journal of experimental botany\| PubMed ID: 16968883	2006
Advances in plant proteomics. Proteomics\| PubMed ID: 16972296	2006
Functional characterization of AtATM1, AtATM2, and AtATM3, a subfamily of Arabidopsis half-molecule ATP-binding cassette transporters implicated in iron homeostasis. The Journal of biological chemistry\| PubMed ID: 17517886	2007
Analysis of the vacuolar luminal proteome of Saccharomyces cerevisiae. The FEBS journal\| PubMed ID: 17651441	2007
Regulation of plant glucosinolate metabolism. Planta\| PubMed ID: 17899172	2007
Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically bound proteins under water deficit. Plant physiology\| PubMed ID: 17951457	2007
Proteomics of pollen development and germination. Journal of proteome research\| PubMed ID: 17958392	2007
Comparative investigations of the glucosinolate-myrosinase system in Arabidopsis suspension cells and hypocotyls. Plant & cell physiology\| PubMed ID: 18202003	2008
Determination of in vivo disulfide-bonded proteins in Arabidopsis. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences\| PubMed ID: 19058769	2009
Functional differentiation of Brassica napus guard cells and mesophyll cells revealed by comparative proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 19106087	2009
Plant Vacuolar ATP-binding Cassette Transporters That Translocate Folates and Antifolates in Vitro and Contribute to Antifolate Tolerance in Vivo. The Journal of biological chemistry\| PubMed ID: 19136566	2009
Characterization of glucosinolate--myrosinase system in developing salt cress Thellungiella halophila. Physiologia plantarum\| PubMed ID: 19508363	2009
Proteomics of Arabidopsis redox proteins in response to methyl jasmonate. Journal of proteomics\| PubMed ID: 19628057	2009
A redox-active isopropylmalate dehydrogenase functions in the biosynthesis of glucosinolates and leucine in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 19674406	2009
Comparative interactomics: analysis of arabidopsis 14-3-3 complexes reveals highly conserved 14-3-3 interactions between humans and plants. Journal of proteome research\| PubMed ID: 19714877	2009
Nuclear localization of NPR1 is required for regulation of salicylate tolerance, isochorismate synthase 1 expression and salicylate accumulation in Arabidopsis. Journal of plant physiology\| PubMed ID: 19716624	2010
Proteomic analysis of sugar beet apomictic monosomic addition line M14. Journal of proteomics\| PubMed ID: 19782777	2009
Analysis of abscisic acid responsive proteins in Brassica napus guard cells by multiplexed isobaric tagging. Journal of proteomics\| PubMed ID: 19913118	2010
Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii. Nature\| PubMed ID: 20054389	2010
Comparative proteomics of salt tolerance in Arabidopsis thaliana and Thellungiella halophila. Journal of proteome research\| PubMed ID: 20377188	2010
Functional specification of Arabidopsis isopropylmalate isomerases in glucosinolate and leucine biosynthesis. Plant & cell physiology\| PubMed ID: 20663849	2010
Functional characterization of Arabidopsis thaliana isopropylmalate dehydrogenases reveals their important roles in gametophyte development. The New phytologist\| PubMed ID: 20840499	2011
Desiccation tolerance mechanism in resurrection fern-ally Selaginella tamariscina revealed by physiological and proteomic analysis. Journal of proteome research\| PubMed ID: 20923197	2010
Isobaric tags for relative and absolute quantification- based comparative proteomics reveals the features of plasma membrane-associated proteomes of pollen grains and pollen tubes from Liliu... Journal of integrative plant biology\| PubMed ID: 21106004	2010
Proteomic analysis of circulating immune complexes in juvenile idiopathic arthritis reveals disease-associated proteins. Proteomics. Clinical applications\| PubMed ID: 21136990	2009
Bioinformatic analysis of molecular network of glucosinolate biosynthesis. Computational biology and chemistry\| PubMed ID: 21247808	2011
Exoproteome of Staphylococcus aureus reveals putative determinants of nasal carriage. Journal of proteome research\| PubMed ID: 21338050	2011
Proteomic identification of differentially expressed proteins in Arabidopsis in response to methyl jasmonate. Journal of plant physiology\| PubMed ID: 21377756	2011
TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.). BMC plant biology\| PubMed ID: 21569438	2011
Developing a new interdisciplinary lab course for undergraduate and graduate students: Plant cells and proteins. Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology\| PubMed ID: 21591136	2007
Structural and functional evolution of isopropylmalate dehydrogenases in the leucine and glucosinolate pathways of Arabidopsis thaliana. The Journal of biological chemistry\| PubMed ID: 21697089	2011
Physiological and proteomic analysis of salinity tolerance in Puccinellia tenuiflora. Journal of proteome research\| PubMed ID: 21732589	2011
Identification of a sugar beet BvM14-MADS box gene through differential gene expression analysis of monosomic addition line M14. Journal of plant physiology\| PubMed ID: 21807438	2011
Mechanisms of plant salt response: insights from proteomics. Journal of proteome research\| PubMed ID: 22017755	2012
Boosting the globalization of plant proteomics through INPPO: current developments and future prospects. Proteomics\| PubMed ID: 22290804	2012
Proteomics and metabolomics of Arabidopsis responses to perturbation of glucosinolate biosynthesis. Molecular plant\| PubMed ID: 22498773	2012
The β-subunit of the SnRK1 complex is phosphorylated by the plant cell death suppressor Adi3. Plant physiology\| PubMed ID: 22573803	2012
Methyl jasmonate responsive proteins in Brassica napus guard cells revealed by iTRAQ-based quantitative proteomics. Journal of proteome research\| PubMed ID: 22639841	2012
Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. The New phytologist\| PubMed ID: 22861377	2012
Archaeal JAB1/MPN/MOV34 metalloenzyme (HvJAMM1) cleaves ubiquitin-like small archaeal modifier proteins (SAMPs) from protein-conjugates. Molecular microbiology\| PubMed ID: 22970855	2012
Single-cell-type proteomics: toward a holistic understanding of plant function. Molecular & cellular proteomics : MCP\| PubMed ID: 22982375	2012
Treatment with the proteasome inhibitor MG132 during the end of oocyte maturation improves oocyte competence for development after fertilization in cattle. PloS one\| PubMed ID: 23144909	2012
Bifurcation of Arabidopsis NLR immune signaling via Ca²⁺-dependent protein kinases. PLoS pathogens\| PubMed ID: 23382673	2013
Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. Biochimica et biophysica acta\| PubMed ID: 23507047	2013
Quantitative proteomics of tomato defense against Pseudomonas syringae infection. Proteomics\| PubMed ID: 23533086	2013
Integrated proteomics and metabolomics of Arabidopsis acclimation to gene-dosage dependent perturbation of isopropylmalate dehydrogenases. PloS one\| PubMed ID: 23533573	2013
C4 photosynthetic machinery: insights from maize chloroplast proteomics. Frontiers in plant science\| PubMed ID: 23596450	2013
Proteomic comparison of basal endosperm in maize miniature1 mutant and its wild-type Mn1. Frontiers in plant science\| PubMed ID: 23805148	2013
Pilot study using proteomics to identify predictive biomarkers of necrotizing enterocolitis from buccal swabs in very low birth weight infants. Neonatology\| PubMed ID: 24030199	2013
Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants. The Plant cell\| PubMed ID: 24368793	2013
Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediates Arabidopsis innate immunity. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24532660	2014
Thiol-based redox proteins in abscisic acid and methyl jasmonate signaling in Brassica napus guard cells. The Plant journal : for cell and molecular biology\| PubMed ID: 24580573	2014
A comparative glycoproteome study of developing endosperm in the hexose-deficient miniature1 (mn1) seed mutant and its wild type Mn1 in maize. Frontiers in plant science\| PubMed ID: 24616729	2014
Plant single-cell and single-cell-type metabolomics. Trends in plant science\| PubMed ID: 24946988	2014
Molecular reprogramming of Arabidopsis in response to perturbation of jasmonate signaling. Journal of proteome research\| PubMed ID: 25311705	2014
cysTMTRAQ-An integrative method for unbiased thiol-based redox proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 25316711	2015
Protein profiles reveal diverse responsive signaling pathways in kernels of two maize inbred lines with contrasting drought sensitivity. International journal of molecular sciences\| PubMed ID: 25334062	2014
Dihydroxyacid dehydratase is important for gametophyte development and disruption causes increased susceptibility to salinity stress in Arabidopsis. Journal of experimental botany\| PubMed ID: 25399005	2015
Identification of regulatory factors for mesenchymal stem cell-derived salivary epithelial cells in a co-culture system. PloS one\| PubMed ID: 25402494	2014
Distinct patterns of the histone marks associated with recruitment of the methionine chain-elongation pathway from leucine biosynthesis. Journal of experimental botany\| PubMed ID: 25428994	2015
Recent advances and challenges in plant phosphoproteomics. Proteomics\| PubMed ID: 25429768	2015
Oxidation and phosphorylation of MAP kinase 4 cause protein aggregation. Biochimica et biophysica acta\| PubMed ID: 25433264	2015
Modulation of RNA polymerase II phosphorylation downstream of pathogen perception orchestrates plant immunity. Cell host & microbe\| PubMed ID: 25464831	2014
Protein phosphorylation in stomatal movement. Plant signaling & behavior\| PubMed ID: 25482764	2014
Gene-expression novelty in allopolyploid cotton: a proteomic perspective. Genetics\| PubMed ID: 25735302	2015
HIV-Enhancing Factors Are Secreted by Reproductive Epithelia upon Inoculation with Bacterial Vaginosis-Associated Bacteria. Protein and peptide letters\| PubMed ID: 25751267	2015
Gold nanoparticle-enabled blood test for early stage cancer detection and risk assessment. ACS applied materials & interfaces\| PubMed ID: 25757512	2015
Phosphorylation of trihelix transcriptional repressor ASR3 by MAP KINASE4 negatively regulates Arabidopsis immunity. The Plant cell\| PubMed ID: 25770109	2015
Salt stress response of membrane proteome of sugar beet monosomic addition line M14. Journal of proteomics\| PubMed ID: 25845583	2015
Proteomics of methyl jasmonate induced defense response in maize leaves against Asian corn borer. BMC genomics\| PubMed ID: 25885025	2015
Adaptive Engineering of Phytochelatin-based Heavy Metal Tolerance. The Journal of biological chemistry\| PubMed ID: 26018077	2015
The guard cell metabolome: functions in stomatal movement and global food security. Frontiers in plant science\| PubMed ID: 26042131	2015
Cytological and Proteomic Analyses of Osmunda cinnamomea Germinating Spores Reveal Characteristics of Fern Spore Germination and Rhizoid Tip Growth. Molecular & cellular proteomics : MCP\| PubMed ID: 26091698	2015
Phosphoproteomics technologies and applications in plant biology research. Frontiers in plant science\| PubMed ID: 26136758	2015
Cytological and proteomic analyses of horsetail (Equisetum arvense L.) spore germination. Frontiers in plant science\| PubMed ID: 26136760	2015
Redox proteomics of tomato in response to Pseudomonas syringae infection. Horticulture research\| PubMed ID: 26504582	2015
Environment-Living Organism's Interactions from Physiology to Genomics. International journal of genomics\| PubMed ID: 26526445	2015
Preparation of Epidermal Peels and Guard Cell Protoplasts for Cellular, Electrophysiological, and -Omics Assays of Guard Cell Function. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 26577784	2016
Metabolomic Responses of Guard Cells and Mesophyll Cells to Bicarbonate. PloS one\| PubMed ID: 26641455	2015
Protein-protein interactions in plant mitogen-activated protein kinase cascades. Journal of experimental botany\| PubMed ID: 26646897	2016
Identification of thioredoxin targets in guard cell enriched epidermal peels using cysTMT proteomics. Journal of proteomics\| PubMed ID: 26691838	2016
Proteome targets of ubiquitin-like samp1ylation are associated with sulfur metabolism and oxidative stress in Haloferax volcanii. Proteomics\| PubMed ID: 26841191	2016
Genome-wide identification and homeolog-specific expression analysis of the SnRK2 genes in Brassica napus guard cells. Plant molecular biology\| PubMed ID: 26898295	2016
Protein Phosphorylation and Redox Modification in Stomatal Guard Cells. Frontiers in physiology\| PubMed ID: 26903877	2016
Editorial: Plant Single Cell Type Systems Biology. Frontiers in plant science\| PubMed ID: 26904034	2016
New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants. Journal of proteomics\| PubMed ID: 26915584	2016
Nitrogen starvation-induced accumulation of triacylglycerol in the green algae: evidence for a role for ROC40, a transcription factor involved in circadian rhythm. The Plant journal : for cell and molecular biology\| PubMed ID: 26920093	2016
Polyploidy and the proteome. Biochimica et biophysica acta\| PubMed ID: 26993527	2016
Proteomic Analysis Reveals the Leaf Color Regulation Mechanism in Chimera Hosta "Gold Standard" Leaves. International journal of molecular sciences\| PubMed ID: 27005614	2016
Chilling-responsive mechanisms in halophyte Puccinellia tenuiflora seedlings revealed from proteomics analysis. Journal of proteomics\| PubMed ID: 27130536	2016
Proteomic Insight into the Response of Arabidopsis Chloroplasts to Darkness. PloS one\| PubMed ID: 27137770	2016
Ubiquitin-Like Proteasome System Represents a Eukaryotic-Like Pathway for Targeted Proteolysis in Archaea. mBio\| PubMed ID: 27190215	2016
Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stress. Journal of proteomics\| PubMed ID: 27233743	2016
Critical Role of COI1-Dependent Jasmonate Pathway in AAL toxin induced PCD in Tomato Revealed by Comparative Proteomics. Scientific reports\| PubMed ID: 27324416	2016
CUB domain-containing protein 1 and the epidermal growth factor receptor cooperate to induce cell detachment. Breast cancer research : BCR\| PubMed ID: 27495374	2016
Jasmonate-mediated stomatal closure under elevated CO revealed by time-resolved metabolomics. The Plant journal : for cell and molecular biology\| PubMed ID: 27500669	2016
Erratum for Fu et al., Ubiquitin-Like Proteasome System Represents a Eukaryotic-Like Pathway for Targeted Proteolysis in Archaea. mBio\| PubMed ID: 27507826	2016
Na2CO3-responsive mechanisms in halophyte Puccinellia tenuiflora roots revealed by physiological and proteomic analyses. Scientific reports\| PubMed ID: 27596441	2016
Regulation of BZR1 in fruit ripening revealed by iTRAQ proteomics analysis. Scientific reports\| PubMed ID: 27680870	2016
Metabolomic Responses of Arabidopsis Suspension Cells to Bicarbonate under Light and Dark Conditions. Scientific reports\| PubMed ID: 27762345	2016
PARylation of the forkhead-associated domain protein DAWDLE regulates plant immunity. EMBO reports\| PubMed ID: 27797852	2016
Bicarbonate Induced Redox Proteome Changes in Arabidopsis Suspension Cells. Frontiers in plant science\| PubMed ID: 28184230	2017
Identification of MAPK Substrates Using Quantitative Phosphoproteomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 28220420	2017
Overexpression of S-Adenosyl-l-Methionine Synthetase 2 from Sugar Beet M14 Increased Arabidopsis Tolerance to Salt and Oxidative Stress. International journal of molecular sciences\| PubMed ID: 28420190	2017
Salinity Response in Chloroplasts: Insights from Gene Characterization. International journal of molecular sciences\| PubMed ID: 28481319	2017
Redox regulation of a guard cell SNF1-related protein kinase in , an oilseed crop. The Biochemical journal\| PubMed ID: 28642254	2017
Metabolomics and Proteomics of Guard Cells in Response to Low CO. Frontiers in molecular biosciences\| PubMed ID: 28791296	2017
Hydrogen Peroxide Response in Leaves of Poplar (Populus simonii × Populus nigra) Revealed from Physiological and Proteomic Analyses. International journal of molecular sciences\| PubMed ID: 28974034	2017
Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses. Environmental microbiology\| PubMed ID: 29194950	2018
An Erwinia amylovora yjeK mutant exhibits reduced virulence, increased chemical sensitivity and numerous environmentally dependent proteomic alterations. Molecular plant pathology\| PubMed ID: 29232043	2018
Quantitative proteomics reveals a role of JAZ7 in plant defense response to Pseudomonas syringae DC3000. Journal of proteomics\| PubMed ID: 29325990	2018
A Phosphorylation Switch on Lon Protease Regulates Bacterial Type III Secretion System in Host. mBio\| PubMed ID: 29362236	2018
Deciphering drought-induced metabolic responses and regulation in developing maize kernels. Plant biotechnology journal\| PubMed ID: 29431900	2018
Regulation of brassinosteroid receptor BRI1 endocytosis and degradation by plant U-box PUB12/PUB13-mediated ubiquitination. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 29432171	2018
Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific reports\| PubMed ID: 29467403	2018
Characterization of thiol-based redox modifications of SNF1-related protein kinase 2.6-2C. FEBS open bio\| PubMed ID: 29632815	2018
Metabolomics of Early Stage Plant Cell-Microbe Interaction Using Stable Isotope Labeling. Frontiers in plant science\| PubMed ID: 29922325	2018