Matthias Wolf

Department of Bioinformatics, University of Würzburg

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 52	2012

Other Publications

Article	Year
Follow-up of five patients with FHHNC due to mutations in the Paracellin-1 gene. Pediatric nephrology (Berlin, Germany)\| PubMed ID: 12185465	2002
A gene mutated in nephronophthisis and retinitis pigmentosa encodes a novel protein, nephroretinin, conserved in evolution. American journal of human genetics\| PubMed ID: 12205563	2002
Pulmonary re-occurrence of post-transplant lymphoproliferative disease with hypogammaglobulinaemia. European journal of pediatrics\| PubMed ID: 12655423	2003
A gene locus for steroid-resistant nephrotic syndrome with deafness maps to chromosome 14q24.2. Journal of the American Society of Nephrology : JASN\| PubMed ID: 12761252	2003
Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosis. Nature genetics\| PubMed ID: 12872122	2003
Mutations in INVS encoding inversin cause nephronophthisis type 2, linking renal cystic disease to the function of primary cilia and left-right axis determination. Nature genetics\| PubMed ID: 12872123	2003
Refinement of the critical region for MCKD1 by detection of transcontinental haplotype sharing. Kidney international\| PubMed ID: 12911527	2003
Mutations of the Uromodulin gene in MCKD type 2 patients cluster in exon 4, which encodes three EGF-like domains. Kidney international\| PubMed ID: 14531790	2003
Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data. International journal of systematic and evolutionary microbiology\| PubMed ID: 15143038	2004
Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta). BMC evolutionary biology\| PubMed ID: 15222898	2004
Telomeric refinement of the MCKD1 locus on chromosome 1q21. Kidney international\| PubMed ID: 15253709	2004
Remote computing environment compensating for brain shift. Computer aided surgery : official journal of the International Society for Computer Aided Surgery\| PubMed ID: 15360098	2003
Medullary cystic kidney disease type 1 in a large Native-American kindred. American journal of kidney diseases : the official journal of the National Kidney Foundation\| PubMed ID: 15384011	2004
Expression and phenotype analysis of the nephrocystin-1 and nephrocystin-4 homologs in Caenorhabditis elegans. Journal of the American Society of Nephrology : JASN\| PubMed ID: 15659564	2005
ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. Bioinformatics (Oxford, England)\| PubMed ID: 15677706	2005
Mapping a new suggestive gene locus for autosomal dominant nephrolithiasis to chromosome 9q33.2-q34.2 by total genome search for linkage. Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association\| PubMed ID: 15741201	2005
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA (New York, N.Y.)\| PubMed ID: 15769870	2005
ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae). Journal of molecular evolution\| PubMed ID: 15871043	2005
CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In silico biology\| PubMed ID: 15996120	2005
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures. RNA (New York, N.Y.)\| PubMed ID: 16244129	2005
Ewald sphere correction for single-particle electron microscopy. Ultramicroscopy\| PubMed ID: 16384646	2006
Medullary cystic kidney disease type 1: mutational analysis in 37 genes based on haplotype sharing. Human genetics\| PubMed ID: 16738948	2006
The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses. Nucleic acids research\| PubMed ID: 16845103	2006
A java applet for exploring the new higher level classification of eukaryotes with emphasis on the taxonomy of protists. The Journal of eukaryotic microbiology\| PubMed ID: 16968448	2006
4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC bioinformatics\| PubMed ID: 17101042	2006
The ciliary gene RPGRIP1L is mutated in cerebello-oculo-renal syndrome (Joubert syndrome type B) and Meckel syndrome. Nature genetics\| PubMed ID: 17558409	2007
Distinguishing species. RNA (New York, N.Y.)\| PubMed ID: 17652131	2007
Deep metazoan phylogeny. In silico biology\| PubMed ID: 17688440	2007
Calcitonin gene-related peptide: a marker for putative primary afferent neurons in the pig small intestinal myenteric plexus? Anatomical record (Hoboken, N.J. : 2007)\| PubMed ID: 17763367	2007
Evidence of oligogenic inheritance in nephronophthisis. Journal of the American Society of Nephrology : JASN\| PubMed ID: 17855640	2007
The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic acids research\| PubMed ID: 17933769	2008
A new method for spherical object detection and its application to computer aided detection of pulmonary nodules in CT images. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention\| PubMed ID: 18051137	2007
Mutation analysis in nephronophthisis using a combined approach of homozygosity mapping, CEL I endonuclease cleavage, and direct sequencing. Human mutation\| PubMed ID: 18076122	2008
Subpicosecond midinfrared spectroscopy of the Pfr reaction of phytochrome Agp1 from Agrobacterium tumefaciens. Biophysical journal\| PubMed ID: 18192363	2008
Computer-aided detection of pulmonary embolism: influence on radiologists' detection performance with respect to vessel segments. European radiology\| PubMed ID: 18292998	2008
Sub-picosecond time resolved infrared spectroscopy of high-spin state formation in Fe(ii) spin crossover complexes. Physical chemistry chemical physics : PCCP\| PubMed ID: 18633547	2008
ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales). BMC evolutionary biology\| PubMed ID: 18655698	2008
ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments. Bioinformatics (Oxford, England)\| PubMed ID: 18723521	2008
Ultrafast infrared spectroscopy of riboflavin: dynamics, electronic structure, and vibrational mode analysis. The journal of physical chemistry. B\| PubMed ID: 18821792	2008
Mutation analysis of the Uromodulin gene in 96 individuals with urinary tract anomalies (CAKUT). Pediatric nephrology (Berlin, Germany)\| PubMed ID: 18846391	2009
Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. BMC research notes\| PubMed ID: 18854023	2008
5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene\| PubMed ID: 19026726	2009
A systematic approach to mapping recessive disease genes in individuals from outbred populations. PLoS genetics\| PubMed ID: 19165332	2009
A probabilistic model of cell size reduction in Pseudo-nitzschia delicatissima (Bacillariophyta). Journal of theoretical biology\| PubMed ID: 19232359	2009
Ultrafast protein conformational alterations in bacteriorhodopsin and its locked analogue BR5.12. The journal of physical chemistry. B\| PubMed ID: 19422251	2009
ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics. Molecular phylogenetics and evolution\| PubMed ID: 19489124	2009
Evolutionary diversification indicated by compensatory base changes in ITS2 secondary structures in a complex fungal species, Rhizoctonia solani. Journal of molecular evolution\| PubMed ID: 19609478	2009
Compensatory base changes illuminate morphologically difficult taxonomy. Molecular phylogenetics and evolution\| PubMed ID: 19660561	2010
Methanogenic archaeal community in the sediment of an artificially partitioned acidic bog lake. FEMS microbiology ecology\| PubMed ID: 19709271	2002
Primary photoinduced protein response in bacteriorhodopsin and sensory rhodopsin II. Journal of the American Chemical Society\| PubMed ID: 19778046	2009
The ITS2 Database III--sequences and structures for phylogeny. Nucleic acids research\| PubMed ID: 19920122	2010
Microevolution and speciation in Thalassiosira weissflogii (Bacillariophyta). Protist\| PubMed ID: 20018562	2010
Structure of clathrin coat with bound Hsc70 and auxilin: mechanism of Hsc70-facilitated disassembly. The EMBO journal\| PubMed ID: 20033059	2010
ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ). BMC evolutionary biology\| PubMed ID: 20035628	2009
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biology direct\| PubMed ID: 20078867	2010
Uromodulin is expressed in renal primary cilia and UMOD mutations result in decreased ciliary uromodulin expression. Human molecular genetics\| PubMed ID: 20172860	2010
Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy. The Journal of clinical investigation\| PubMed ID: 20179356	2010
Subunit interactions in bovine papillomavirus. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20308582	2010
A two-level approach towards semantic colon segmentation: removing extra-colonic findings. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention\| PubMed ID: 20426210	2009
Nephronophthisis. Pediatric nephrology (Berlin, Germany)\| PubMed ID: 20652329	2011
Mutation analysis of 18 nephronophthisis associated ciliopathy disease genes using a DNA pooling and next generation sequencing strategy. Journal of medical genetics\| PubMed ID: 21068128	2011
A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data. BMC research notes\| PubMed ID: 21108782	2010
Excited-state dynamics of protochlorophyllide revealed by subpicosecond infrared spectroscopy. Biophysical journal\| PubMed ID: 21190679	2011
Evolutionary distances in the twilight zone--a rational kernel approach. PloS one\| PubMed ID: 21209825	2010
Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life. PloS one\| PubMed ID: 21347329	2011
Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species. Molecular ecology resources\| PubMed ID: 21564570	2009
Vibrational mode analysis of isotope-labeled electronically excited riboflavin. The journal of physical chemistry. B\| PubMed ID: 21598977	2011
Autosomal dominant mutation in the signal peptide of renin in a kindred with anemia, hyperuricemia, and CKD. American journal of kidney diseases : the official journal of the National Kidney Foundation\| PubMed ID: 21903317	2011
Computer-aided detection of colorectal polyps in CT colonography with and without fecal tagging: a stand-alone evaluation. Investigative radiology\| PubMed ID: 21934519	2012
Robust large scale prone-supine polyp matching using local features: a metric learning approach. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention\| PubMed ID: 22003686	2011
Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2. Annals of botany\| PubMed ID: 22028463	2012
ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies. Molecular phylogenetics and evolution\| PubMed ID: 22366368	2012