John K. Colbourne

School of Biosciences, University of Birmingham

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 21	2023
Publication title Cited by 6	2024

Other Publications

Article	Year
Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. BMC genomics\| PubMed ID: 23445305	2013
Molecular cloning of doublesex genes of four cladocera (water flea) species. BMC genomics\| PubMed ID: 23575357	2013
Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict. PloS one\| PubMed ID: 23613935	2013
Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent. Aquatic toxicology (Amsterdam, Netherlands)\| PubMed ID: 24113165	2013
Function and evolution of DNA methylation in Nasonia vitripennis. PLoS genetics\| PubMed ID: 24130511	2013
Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird. The Journal of experimental biology\| PubMed ID: 24198265	2014
Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors. Environmental science & technology\| PubMed ID: 24552364	2014
Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions. BMC genomics\| PubMed ID: 24758194	2014
Genomic data integration for ecological and evolutionary traits in non-model organisms. BMC genomics\| PubMed ID: 25047861	2014
Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Molecular biology and evolution\| PubMed ID: 25158801	2014
Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia. BMC genomics\| PubMed ID: 25282344	2014
Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation. Genome biology\| PubMed ID: 25609551	2014
Ionotropic glutamate receptors mediate inducible defense in the water flea Daphnia pulex. PloS one\| PubMed ID: 25799112	2015
Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii. BMC genomics\| PubMed ID: 26444857	2015
Novel Cadmium Responsive MicroRNAs in Daphnia pulex. Environmental science & technology\| PubMed ID: 26550707	2015
Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna. Chromosoma\| PubMed ID: 26685998	2016
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors. Scientific data\| PubMed ID: 27164179	2016
Thermal variation and factors influencing vertical migration behavior in Daphnia populations. Journal of thermal biology\| PubMed ID: 27503718	2016
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis. BMC genomics\| PubMed ID: 27561358	2016
The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish. Science (New York, N.Y.)\| PubMed ID: 27940876	2016
The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Genome biology and evolution\| PubMed ID: 28201664	2017
Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes. Molecular ecology\| PubMed ID: 28746735	2017
Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia. Genome biology and evolution\| PubMed ID: 28854641	2017
Evolutionary transition from blood feeding to obligate nonbiting in a mosquito. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 29255013	2018
The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology. Environmental science & technology\| PubMed ID: 29634279	2018
How omics technologies can enhance chemical safety regulation: perspectives from academia, government, and industry: The Perspectives column is a regular series designed to discuss and evalu... Environmental toxicology and chemistry\| PubMed ID: 29697867	2018
The transcriptomic and proteomic responses of Daphnia pulex to changes in temperature and food supply comprise environment-specific and clone-specific elements. BMC genomics\| PubMed ID: 29783951	2018
Scan, extract, wrap, compute-a 3D method to analyse morphological shape differences. PeerJ\| PubMed ID: 29900069	2018
Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish. Environmental science & technology\| PubMed ID: 29979584	2018
Pattern of DNA Methylation in Daphnia: Evolutionary Perspective. Genome biology and evolution\| PubMed ID: 30060190	2018
Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms. Communications biology\| PubMed ID: 30271891	2018
Mitotic activity patterns and cytoskeletal changes throughout the progression of diapause developmental program in Daphnia. BMC cell biology\| PubMed ID: 30594127	2018
Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna. Environmental science & technology\| PubMed ID: 30608651	2019
Transgenerational response to early spring warming in Daphnia. Scientific reports\| PubMed ID: 30872717	2019
Improved Algal Toxicity Test System for Robust -Driven Mode-of-Action Discovery in . Metabolites\| PubMed ID: 31083411	2019
Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment. Toxicology in vitro : an international journal published in association with BIBRA\| PubMed ID: 31669395	2020
Dynamics of Cadmium Acclimation in : Linking Fitness Costs, Cross-Tolerance, and Hyper-Induction of Metallothionein. Environmental science & technology\| PubMed ID: 31738529	2019
A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex. BMC genomics\| PubMed ID: 31906859	2020
Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis. PLoS genetics\| PubMed ID: 31986136	2020
Broccoli: Combining Phylogenetic and Network Analyses for Orthology Assignment. Molecular biology and evolution\| PubMed ID: 32602888	2020
Spatio-temporal processes drive fine-scale genetic structure in an otherwise panmictic seabird population. Scientific reports\| PubMed ID: 33244100	2020
Centennial clonal stability of asexual in Greenland lakes despite climate variability. Ecology and evolution\| PubMed ID: 33391708	2020
Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia. Nature communications\| PubMed ID: 34262034	2021
Refining the evolutionary time machine: An assessment of whole genome amplification using single historical Daphnia eggs. Molecular ecology resources\| PubMed ID: 34672105	2022
Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity. Toxicological sciences : an official journal of the Society of Toxicology\| PubMed ID: 35094093	2022
Combined exome and transcriptome sequencing of non-muscle-invasive bladder cancer: associations between genomic changes, expression subtypes, and clinical outcomes. Genome medicine\| PubMed ID: 35655252	2022
as a Sentinel Species for Environmental Health Protection: A Perspective on Biomonitoring and Bioremediation of Chemical Pollution. Environmental science & technology\| PubMed ID: 36169655	2022
Modernizing persistence-bioaccumulation-toxicity (PBT) assessment with high throughput animal-free methods. Archives of toxicology\| PubMed ID: 36952002	2023
The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome. Nucleic acids research\| PubMed ID: 37638757	2023
100 years of anthropogenic impact causes changes in freshwater functional biodiversity. eLife\| PubMed ID: 37933221	2023