Arcadi Navarro

IBE, Universitat Pompeu Fabra

Affiliated withUniversitat Pompeu Fabra Institució Catalana de Recerca i Estudis Avançats (ICREA) and Universitat Pompeu Fabra The Barcelona Institute of Science and Technology

Research Area

Developmental Biology

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 3	2024

Other Publications

Article	Year
Chromosomal speciation and molecular divergence--accelerated evolution in rearranged chromosomes. Science (New York, N.Y.)\| PubMed ID: 12690198	2003
Accumulating postzygotic isolation genes in parapatry: a new twist on chromosomal speciation. Evolution; international journal of organic evolution\| PubMed ID: 12703935	2003
Dynamics of a human interparalog gene conversion hotspot. Genome research\| PubMed ID: 15123583	2004
Positive selection in MAOA gene is human exclusive: determination of the putative amino acid change selected in the human lineage. Human genetics\| PubMed ID: 15349769	2004
Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees. Trends in genetics : TIG\| PubMed ID: 15475109	2004
Geographic stratification of linkage disequilibrium: a worldwide population study in a region of chromosome 22. Human genomics\| PubMed ID: 15606995	2004
Chromosomal rearrangements are associated with higher rates of molecular evolution in mammals. Gene\| PubMed ID: 15951139	2005
Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scans. Bioinformatics (Oxford, England)\| PubMed ID: 16204099	2005
The prion protein gene in humans revisited: lessons from a worldwide resequencing study. Genome research\| PubMed ID: 16369046	2006
The portability of tagSNPs across populations: a worldwide survey. Genome research\| PubMed ID: 16467560	2006
Frequent appearance of novel protein-coding sequences by frameshift translation. Genomics\| PubMed ID: 16890400	2006
Patterns and rates of intron divergence between humans and chimpanzees. Genome biology\| PubMed ID: 17309804	2007
Extreme individual marker F(ST )values do not imply population-specific selection in humans: the NRG1 example. Human genetics\| PubMed ID: 17457614	2007
On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees. Genome biology\| PubMed ID: 17971225	2007
Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics\| PubMed ID: 18493071	2008
SNP analysis to results (SNPator): a web-based environment oriented to statistical genomics analyses upon SNP data. Bioinformatics (Oxford, England)\| PubMed ID: 18515823	2008
Balancing selection is the main force shaping the evolution of innate immunity genes. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 18606686	2008
The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements. BMC genomics\| PubMed ID: 18699995	2008
Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms. PloS one\| PubMed ID: 18941528	2008
Allele-specific gene expression is widespread across the genome and biological processes. PloS one\| PubMed ID: 19127300	2009
Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular biology and evolution\| PubMed ID: 19578157	2009
Genoeconomics: promises and caveats for a new field. Annals of the New York Academy of Sciences\| PubMed ID: 19580553	2009
Decay of linkage disequilibrium within genes across HGDP-CEPH human samples: most population isolates do not show increased LD. BMC genomics\| PubMed ID: 19638193	2009
Chromosomal speciation revisited: rearranging theory with pieces of evidence. Trends in ecology & evolution\| PubMed ID: 20817305	2010
Selection upon genome architecture: conservation of functional neighborhoods with changing genes. PLoS computational biology\| PubMed ID: 20949098	2010
Recent human evolution has shaped geographical differences in susceptibility to disease. BMC genomics\| PubMed ID: 21261943	2011
Comparative and demographic analysis of orang-utan genomes. Nature\| PubMed ID: 21270892	2011
Genome-wide association studies pipeline (GWASpi): a desktop application for genome-wide SNP analysis and management. Bioinformatics (Oxford, England)\| PubMed ID: 21586520	2011
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome research\| PubMed ID: 21685127	2011
Copy number variation analysis in the great apes reveals species-specific patterns of structural variation. Genome research\| PubMed ID: 21824994	2011
HeT-A_pi1, a piRNA target sequence in the Drosophila telomeric retrotransposon HeT-A, is extremely conserved across copies and species. PloS one\| PubMed ID: 22629389	2012
The genome of melon (Cucumis melo L.). Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22753475	2012
Identification of a functional variant in the KIF5A-CYP27B1-METTL1-FAM119B locus associated with multiple sclerosis. Journal of medical genetics\| PubMed ID: 23160276	2013
Accelerated exon evolution within primate segmental duplications. Genome biology\| PubMed ID: 23360670	2013
The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. BMC genomics\| PubMed ID: 23721540	2013
High trans-ethnic replicability of GWAS results implies common causal variants. PLoS genetics\| PubMed ID: 23785302	2013
Great ape genetic diversity and population history. Nature\| PubMed ID: 23823723	2013
Application of multi-SNP approaches Bayesian LASSO and AUC-RF to detect main effects of inflammatory-gene variants associated with bladder cancer risk. PloS one\| PubMed ID: 24391818	2013
Pool and conquer: new tricks for (c)old problems. Molecular ecology\| PubMed ID: 24667009	2014
Genome-wide analysis of wild-type Epstein-Barr virus genomes derived from healthy individuals of the 1,000 Genomes Project. Genome biology and evolution\| PubMed ID: 24682154	2014
Genomic analysis of the blood attributed to Louis XVI (1754-1793), king of France. Scientific reports\| PubMed ID: 24763138	2014
Genetic variation in the TP53 pathway and bladder cancer risk. a comprehensive analysis. PloS one\| PubMed ID: 24818791	2014
Interplay of interlocus gene conversion and crossover in segmental duplications under a neutral scenario. G3 (Bethesda, Md.)\| PubMed ID: 24906640	2014
Mendelian genes for Parkinson's disease contribute to the sporadic forms of the disease. Human molecular genetics\| PubMed ID: 25504046	2015
Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements. Genome biology and evolution\| PubMed ID: 25977458	2015
Genetic and Clinical Factors Associated with Chronic Postsurgical Pain after Hernia Repair, Hysterectomy, and Thoracotomy: A Two-year Multicenter Cohort Study. Anesthesiology\| PubMed ID: 25985024	2015
The European Genome-phenome Archive of human data consented for biomedical research. Nature genetics\| PubMed ID: 26111507	2015
SeDuS: segmental duplication simulator. Bioinformatics (Oxford, England)\| PubMed ID: 26358728	2016
Pharmacogenomic study in patients with multiple sclerosis: Responders and nonresponders to IFN-β. Neurology(R) neuroimmunology & neuroinflammation\| PubMed ID: 26445728	2015
267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation. Molecular biology and evolution\| PubMed ID: 26764160	2016
Functional Implications of Human-Specific Changes in Great Ape microRNAs. PloS one\| PubMed ID: 27105073	2016
Assessing statistical significance in multivariable genome wide association analysis. Bioinformatics (Oxford, England)\| PubMed ID: 27153677	2016
Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions. Genome biology and evolution\| PubMed ID: 27345955	2016
Differences in molecular evolutionary rates among microRNAs in the human and chimpanzee genomes. BMC genomics\| PubMed ID: 27474039	2016
Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science (New York, N.Y.)\| PubMed ID: 27789843	2016
Natural Selection in the Great Apes. Molecular biology and evolution\| PubMed ID: 27795229	2016
Combining Multiple Hypothesis Testing with Machine Learning Increases the Statistical Power of Genome-wide Association Studies. Scientific reports\| PubMed ID: 27892471	2016
Properties of human disease genes and the role of genes linked to Mendelian disorders in complex disease aetiology. Human molecular genetics\| PubMed ID: 28053046	2017
Interhemispheric gene expression differences in the cerebral cortex of humans and macaque monkeys. Brain structure & function\| PubMed ID: 28317062	2017
Transcriptional network analysis in frontal cortex in Lewy body diseases with focus on dementia with Lewy bodies. Brain pathology (Zurich, Switzerland)\| PubMed ID: 28321951	2018
Erratum to: Interhemispheric gene expression differences in the cerebral cortex of humans and macaque monkeys. Brain structure & function\| PubMed ID: 28488187	2017
Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples. PloS one\| PubMed ID: 28654678	2017
Antagonistic pleiotropy and mutation accumulation influence human senescence and disease. Nature ecology & evolution\| PubMed ID: 28812720	2017
The impact of endogenous content, replicates and pooling on genome capture from faecal samples. Molecular ecology resources\| PubMed ID: 29058768	2018
A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0). GigaScience\| PubMed ID: 29092041	2017
NLRP3 polymorphisms and response to interferon-beta in multiple sclerosis patients. Multiple sclerosis (Houndmills, Basingstoke, England)\| PubMed ID: 29117789	2018
Potential damaging mutation in LRP5 from genome sequencing of the first reported chimpanzee with the Chiari malformation. Scientific reports\| PubMed ID: 29123202	2017
Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing. BMC genomics\| PubMed ID: 29258433	2017
Whole genome diversity of inherited chromosomally integrated HHV-6 derived from healthy individuals of diverse geographic origin. Scientific reports\| PubMed ID: 29472617	2018
Author Correction: Whole genome diversity of inherited chromosomally integrated HHV-6 derived from healthy individuals of diverse geographic origin. Scientific reports\| PubMed ID: 29662094	2018
Replicability and Prediction: Lessons and Challenges from GWAS. Trends in genetics : TIG\| PubMed ID: 29716745	2018
Author Correction: Potential damaging mutation in LRP5 from genome sequencing of the first reported chimpanzee with the Chiari malformation. Scientific reports\| PubMed ID: 29728620	2018
Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis. Molecular biology and evolution\| PubMed ID: 29788292	2018
Effect of Collapsed Duplications on Diversity Estimates: What to Expect. Genome biology and evolution\| PubMed ID: 30364947	2018
Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Nature genetics\| PubMed ID: 30643258	2019
A pharmacogenetic study implicates in the response to Interferon-β in multiple sclerosis. Multiple sclerosis (Houndmills, Basingstoke, England)\| PubMed ID: 31221001	2020
Reply to: Retesting the influences of mutation accumulation and antagonistic pleiotropy on human senescence and disease. Nature ecology & evolution\| PubMed ID: 31235924	2019
Genome-phenome explorer (GePhEx): a tool for the visualization and interpretation of phenotypic relationships supported by genetic evidence. Bioinformatics (Oxford, England)\| PubMed ID: 31393550	2020
Leveraging European infrastructures to access 1 million human genomes by 2022. Nature reviews. Genetics\| PubMed ID: 31455890	2019
Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022. Nature reviews. Genetics\| PubMed ID: 31520075	2019
Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Current biology : CB\| PubMed ID: 31839456	2020
A New Risk Variant for Multiple Sclerosis at 11q23.3 Is Associated with Expansion of Circulating Regulatory T Cells. Journal of clinical medicine\| PubMed ID: 32110891	2020
Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta). PLoS genetics\| PubMed ID: 32392208	2020
Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations. Nature communications\| PubMed ID: 32427823	2020
The shared genetic architecture of schizophrenia, bipolar disorder and lifespan. Human genetics\| PubMed ID: 32772156	2021
Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches. Microorganisms\| PubMed ID: 33138327	2020
The Presence of Human Herpesvirus 6 in the Brain in Health and Disease. Biomolecules\| PubMed ID: 33172107	2020
Variation in predicted COVID-19 risk among lemurs and lorises. bioRxiv : the preprint server for biology\| PubMed ID: 33564767	2021
Variation in predicted COVID-19 risk among lemurs and lorises. American journal of primatology\| PubMed ID: 33792947	2021
Inversions and genomic differentiation after secondary contact: When drift contributes to maintenance, not loss, of differentiation. Evolution; international journal of organic evolution\| PubMed ID: 33844299	2021
Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures. Nature communications\| PubMed ID: 34035253	2021
Genetic Predisposition to Alzheimer's Disease Is Associated with Enlargement of Perivascular Spaces in Centrum Semiovale Region. Genes\| PubMed ID: 34072165	2021
Comparative Analysis of Mammal Genomes Unveils Key Genomic Variability for Human Life Span. Molecular biology and evolution\| PubMed ID: 34297086	2021
Coexpression of the discoidin domain receptor 1 gene with oligodendrocyte-related and schizophrenia risk genes in the developing and adult human brain. Brain and behavior\| PubMed ID: 34323026	2021
The genetic impact of an Ebola outbreak on a wild gorilla population. BMC genomics\| PubMed ID: 34635054	2021
Single-cell Transcriptional Changes in Neurodegenerative Diseases. Neuroscience\| PubMed ID: 34748859	2021
Correction: Telford et al. Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches. 2020, , 1686. Microorganisms\| PubMed ID: 34835535	2021
GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell genomics\| PubMed ID: 35072136	2021
International federation of genomic medicine databases using GA4GH standards. Cell genomics\| PubMed ID: 35128509	2021
Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond. Human mutation\| PubMed ID: 35297548	2022
Human herpesvirus diversity is altered in HLA class I binding peptides. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 35486690	2022
Prepandemic Alzheimer Disease Biomarkers and Anxious-Depressive Symptoms During the COVID-19 Confinement in Cognitively Unimpaired Adults. Neurology\| PubMed ID: 35918160	2022
Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature\| PubMed ID: 35962045	2022
Look-alike humans identified by facial recognition algorithms show genetic similarities. Cell reports\| PubMed ID: 36001980	2022
Genetically predicted telomere length and its relationship with neurodegenerative diseases and life expectancy. Computational and structural biotechnology journal\| PubMed ID: 36051868	2022
Brain transcriptomic profiling reveals common alterations across neurodegenerative and psychiatric disorders. Computational and structural biotechnology journal\| PubMed ID: 36090817	2022
Genetically predicted telomere length and Alzheimer's disease endophenotypes: a Mendelian randomization study. Alzheimer's research & therapy\| PubMed ID: 36345036	2022
Polygenic risk scores enhance prediction of body mass index increase in individuals with a first episode of psychosis. European psychiatry : the journal of the Association of European Psychiatrists\| PubMed ID: 36852609	2023
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.)\| PubMed ID: 37104599	2023
The landscape of tolerated genetic variation in humans and primates. bioRxiv : the preprint server for biology\| PubMed ID: 37205491	2023
The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.)\| PubMed ID: 37262156	2023
A global catalog of whole-genome diversity from 233 primate species. Science (New York, N.Y.)\| PubMed ID: 37262161	2023
Understanding the neurological implications of acute and long COVID using brain organoids. Disease models & mechanisms\| PubMed ID: 37458167	2023
CAAStools: a toolbox to identify and test Convergent Amino Acid Substitutions. Bioinformatics (Oxford, England)\| PubMed ID: 37846039	2023
Identification of constrained sequence elements across 239 primate genomes. Nature\| PubMed ID: 38030727	2024
Genetic characterization of the ALFA study: Uncovering genetic profiles in the Alzheimer's continuum. Alzheimer's & dementia : the journal of the Alzheimer's Association\| PubMed ID: 38088508	2023