Dirk Bumann

Biozentrum, University of Basel

Research Area

Biography

Dirk Bumann has not added Biography.
If you are Dirk Bumann and would like to personalize this page please email our Author Liaison for assistance.

JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 1	2024

Other Publications

Article	Year
Has nature already identified all useful antibacterial targets? Current opinion in microbiology\| PubMed ID: 18804175	2008
System-level analysis of Salmonella metabolism during infection. Current opinion in microbiology\| PubMed ID: 19744878	2009
Pathogen proteomes during infection: A basis for infection research and novel control strategies. Journal of proteomics\| PubMed ID: 20797457	2010
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC systems biology\| PubMed ID: 21244678	2011
Salmonella-induced mucosal lectin RegIIIβ kills competing gut microbiota. PloS one\| PubMed ID: 21694778	2011
Identification of tumor-specific Salmonella Typhimurium promoters and their regulatory logic. Nucleic acids research\| PubMed ID: 22140114	2012
Intestinal inflammation responds to microbial tissue load independent of pathogen/non-pathogen discrimination. PloS one\| PubMed ID: 22586458	2012
Extensive in vivo resilience of persistent Salmonella. PloS one\| PubMed ID: 22911873	2012
Immunity to intracellular Salmonella depends on surface-associated antigens. PLoS pathogens\| PubMed ID: 23093937	2012
Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway. PloS one\| PubMed ID: 23285211	2012
Parallel exploitation of diverse host nutrients enhances Salmonella virulence. PLoS pathogens\| PubMed ID: 23633950	2013
Disparate impact of oxidative host defenses determines the fate of Salmonella during systemic infection in mice. Cell host & microbe\| PubMed ID: 24439899	2014
Caspase-11 activation requires lysis of pathogen-containing vacuoles by IFN-induced GTPases. Nature\| PubMed ID: 24739961	2014
The central metabolism regulator EIIAGlc switches Salmonella from growth arrest to acute virulence through activation of virulence factor secretion. Cell reports\| PubMed ID: 24835993	2014
Shigella reroutes host cell central metabolism to obtain high-flux nutrient supply for vigorous intracellular growth. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24958876	2014
Phenotypic variation of Salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell\| PubMed ID: 25126781	2014
Identification of Protective Antigens for Vaccination against Systemic Salmonellosis. Frontiers in immunology\| PubMed ID: 25157252	2014
Fast sampling method for mammalian cell metabolic analyses using liquid chromatography-mass spectrometry. Nature protocols\| PubMed ID: 25474028	2015
PLEKHM1 regulates Salmonella-containing vacuole biogenesis and infection. Cell host & microbe\| PubMed ID: 25500191	2015
Heterogeneous host-pathogen encounters: act locally, think globally. Cell host & microbe\| PubMed ID: 25590757	2015
Catechol siderophores repress the pyochelin pathway and activate the enterobactin pathway in Pseudomonas aeruginosa: an opportunity for siderophore-antibiotic conjugates development. Environmental microbiology\| PubMed ID: 26718479	2016
Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality. BMC microbiology\| PubMed ID: 27599549	2016
A Novel Genome-Editing Platform for Drug-Resistant Acinetobacter baumannii Reveals an AdeR-Unrelated Tigecycline Resistance Mechanism. Antimicrobial agents and chemotherapy\| PubMed ID: 27671072	2016
Myeloperoxidase targets oxidative host attacks to Salmonella and prevents collateral tissue damage. Nature microbiology\| PubMed ID: 28112722	2017
Intracellular Salmonella metabolism. Cellular microbiology\| PubMed ID: 28672057	2017
Salmonella Utilizes Zinc To Subvert Antimicrobial Host Defense of Macrophages via Modulation of NF-κB Signaling. Infection and immunity\| PubMed ID: 28874447	2017
Heterogeneity of Salmonella-host interactions in infected host tissues. Current opinion in microbiology\| PubMed ID: 28988065	2017
Structural basis for maintenance of bacterial outer membrane lipid asymmetry. Nature microbiology\| PubMed ID: 29038444	2017
Editorial overview: Bacterial systems biology. Current opinion in microbiology\| PubMed ID: 29241558	2017
Correction for Wu et al., "Salmonella Utilizes Zinc To Subvert Antimicrobial Host Defense of Macrophages via Modulation of NF-κB Signaling". Infection and immunity\| PubMed ID: 29463686	2018
TonB-Dependent Receptor Repertoire of Pseudomonas aeruginosa for Uptake of Siderophore-Drug Conjugates. Antimicrobial agents and chemotherapy\| PubMed ID: 29555629	2018
The hepcidin-ferroportin axis controls the iron content of Salmonella-containing vacuoles in macrophages. Nature communications\| PubMed ID: 29844422	2018
Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses. Nature immunology\| PubMed ID: 29925993	2018
Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa. ACS infectious diseases\| PubMed ID: 30039960	2018
A Multidisciplinary Approach toward Identification of Antibiotic Scaffolds for Acinetobacter baumannii. Structure (London, England : 1993)\| PubMed ID: 30554842	2019
Disruption of Coronin 1 Signaling in T Cells Promotes Allograft Tolerance while Maintaining Anti-Pathogen Immunity. Immunity\| PubMed ID: 30611611	2019
Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains. EBioMedicine\| PubMed ID: 30852163	2019
Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses. Nature immunology\| PubMed ID: 30862955	2019
Single-Cell Metabolism and Stress Responses in Complex Host Tissues. Microbiology spectrum\| PubMed ID: 30953427	2019
Definitions and guidelines for research on antibiotic persistence. Nature reviews. Microbiology\| PubMed ID: 30980069	2019
Publisher Correction: Definitions and guidelines for research on antibiotic persistence. Nature reviews. Microbiology\| PubMed ID: 31036919	2019
Dissecting Colistin Resistance Mechanisms in Extensively Drug-Resistant Acinetobacter baumannii Clinical Isolates. mBio\| PubMed ID: 31311879	2019
Non-specific interference of cobalt with siderophore-dependent iron uptake pathways. Metallomics : integrated biometal science\| PubMed ID: 31633703	2019
Antibiotic chemotherapy against heterogeneous pathogen populations in complex host tissues. F1000Research\| PubMed ID: 31737252	2019
Host resistance factor SLC11A1 restricts growth through magnesium deprivation. Science (New York, N.Y.)\| PubMed ID: 31753999	2019
Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression. Mucosal immunology\| PubMed ID: 31953493	2020
Classical Activation of Macrophages Leads to Lipid Droplet Formation Without Fatty Acid Synthesis. Frontiers in immunology\| PubMed ID: 32132994	2020
Efficient dual-negative selection for bacterial genome editing. BMC microbiology\| PubMed ID: 32448155	2020
Dynamics in protein translation sustaining T cell preparedness. Nature immunology\| PubMed ID: 32632289	2020
Single-cell reporters for pathogen responses to antimicrobial host attacks. Current opinion in microbiology\| PubMed ID: 32810800	2021
Regulation of chaperone function by coupled folding and oligomerization. Science advances\| PubMed ID: 33087350	2020
Molecular reprogramming and phenotype switching in lead to high antibiotic persistence and affect therapy success. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 33574060	2021
Increased Production of Outer Membrane Vesicles by Salmonella Interferes with Complement-Mediated Innate Immune Attack. mBio\| PubMed ID: 34061589	2021
Ferritin H deficiency deteriorates cellular iron handling and worsens Salmonella typhimurium infection by triggering hyperinflammation. JCI insight\| PubMed ID: 34236052	2021
Outer membrane permeability: Antimicrobials and diverse nutrients bypass porins in . Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 34326266	2021
Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site. PLoS biology\| PubMed ID: 34762655	2021
Tissue compartmentalization enables persistence during chemotherapy. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 34911764	2021
Making Antimicrobial Susceptibility Testing More Physiologically Relevant with Bicarbonate? Antimicrobial agents and chemotherapy\| PubMed ID: 35435706	2022
Plant-Derived Catechols Are Substrates of TonB-Dependent Transporters and Sensitize Pseudomonas aeruginosa to Siderophore-Drug Conjugates. mBio\| PubMed ID: 35770947	2022
Importance of aspartyl protease 5 in the establishment of the intracellular niche during acute and chronic infection of Toxoplasma gondii. Molecular microbiology\| PubMed ID: 36210525	2022
Zebrafish Larvae as an Model for Antimicrobial Activity Tests against Intracellular . Frontiers in bioscience (Landmark edition)\| PubMed ID: 37258480	2023
Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions. Nature microbiology\| PubMed ID: 38177300	2024