Qirong Shen

Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University

Affiliated withNanjing Agricultural University

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 2	2024

Other Publications

Article	Year
Novel rhamnolipid biosurfactants produced by a polycyclic aromatic hydrocarbon-degrading bacterium Pseudomonas aeruginosa strain NY3. Biotechnology advances\| PubMed ID: 20580808	2010
Molecular cloning and identification of the laspartomycin biosynthetic gene cluster from Streptomyces viridochromogenes. Gene\| PubMed ID: 21640802	2011
Characterization of a thermostable β-glucosidase from Aspergillus fumigatus Z5, and its functional expression in Pichia pastoris X33. Microbial cell factories\| PubMed ID: 22340848	2012
Bacillus subtilis genome editing using ssDNA with short homology regions. Nucleic acids research\| PubMed ID: 22422839	2012
Antifungal activity of Bacillus amyloliquefaciens NJN-6 volatile compounds against Fusarium oxysporum f. sp. cubense. Applied and environmental microbiology\| PubMed ID: 22685147	2012
Knockdown of a rice stelar nitrate transporter alters long-distance translocation but not root influx. Plant physiology\| PubMed ID: 23093362	2012
Contribution of bacillomycin D in Bacillus amyloliquefaciens SQR9 to antifungal activity and biofilm formation. Applied and environmental microbiology\| PubMed ID: 23160135	2013
Application of natural blends of phytochemicals derived from the root exudates of Arabidopsis to the soil reveal that phenolic-related compounds predominantly modulate the soil microbiome. The Journal of biological chemistry\| PubMed ID: 23293028	2013
The critical role of potassium in plant stress response. International journal of molecular sciences\| PubMed ID: 23549270	2013
Does chloroplast size influence photosynthetic nitrogen use efficiency? PloS one\| PubMed ID: 23620801	2013
Root exudates from grafted-root watermelon showed a certain contribution in inhibiting Fusarium oxysporum f. sp. niveum. PloS one\| PubMed ID: 23700421	2013
Functional Groups Determine Biochar Properties (pH and EC) as Studied by Two-Dimensional (13)C NMR Correlation Spectroscopy. PloS one\| PubMed ID: 23840381	2013
Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources. Biotechnology for biofuels\| PubMed ID: 24131596	2013
Responses of bacterial communities in arable soils in a rice-wheat cropping system to different fertilizer regimes and sampling times. PloS one\| PubMed ID: 24465530	2014
Microbial community diversities and taxa abundances in soils along a seven-year gradient of potato monoculture using high throughput pyrosequencing approach. PloS one\| PubMed ID: 24497959	2014
Enhanced control of cucumber wilt disease by Bacillus amyloliquefaciens SQR9 by altering the regulation of Its DegU phosphorylation. Applied and environmental microbiology\| PubMed ID: 24584252	2014
Rapid and accurate evaluation of the quality of commercial organic fertilizers using near infrared spectroscopy. PloS one\| PubMed ID: 24586313	2014
Deep 16S rRNA pyrosequencing reveals a bacterial community associated with Banana Fusarium Wilt disease suppression induced by bio-organic fertilizer application. PloS one\| PubMed ID: 24871319	2014
A new acidophilic thermostable endo-1,4-β-mannanase from Penicillium oxalicum GZ-2: cloning, characterization and functional expression in Pichia pastoris. BMC biotechnology\| PubMed ID: 25348022
Insights into high-efficiency lignocellulolytic enzyme production by Penicillium oxalicum GZ-2 induced by a complex substrate. Biotechnology for biofuels\| PubMed ID: 25419234
Responses of beneficial Bacillus amyloliquefaciens SQR9 to different soilborne fungal pathogens through the alteration of antifungal compounds production. Frontiers in microbiology\| PubMed ID: 25484880	2014
Utilization of different waste proteins to create a novel PGPR-containing bio-organic fertilizer. Scientific reports\| PubMed ID: 25586328	2015
Arsenic methylation and volatilization by arsenite S-adenosylmethionine methyltransferase in Pseudomonas alcaligenes NBRC14159. Applied and environmental microbiology\| PubMed ID: 25681184	2015
The nematicidal effect of camellia seed cake on root-knot nematode Meloidogyne javanica of banana. PloS one\| PubMed ID: 25849382	2015
Pectin Enhances Bio-Control Efficacy by Inducing Colonization and Secretion of Secondary Metabolites by Bacillus amyloliquefaciens SQY 162 in the Rhizosphere of Tobacco. PloS one\| PubMed ID: 25996156	2015
Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes. BMC genomics\| PubMed ID: 26076650	2015
Characterization and identification of the xylanolytic enzymes from Aspergillus fumigatus Z5. BMC microbiology\| PubMed ID: 26100973	2015
Genetically Engineering Bacillus subtilis with a Heat-Resistant Arsenite Methyltransferase for Bioremediation of Arsenic-Contaminated Organic Waste. Applied and environmental microbiology\| PubMed ID: 26187966	2015
Functional diversity and properties of multiple xylanases from Penicillium oxalicum GZ-2. Scientific reports\| PubMed ID: 26224514
Manipulating the banana rhizosphere microbiome for biological control of Panama disease. Scientific reports\| PubMed ID: 26242751	2015
Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei. Genome announcements\| PubMed ID: 26272569	2015
Organic acids from root exudates of banana help root colonization of PGPR strain Bacillus amyloliquefaciens NJN-6. Scientific reports\| PubMed ID: 26299781	2015
The Effect of Long-Term Continuous Cropping of Black Pepper on Soil Bacterial Communities as Determined by 454 Pyrosequencing. PloS one\| PubMed ID: 26317364	2015
Analysis and cloning of the synthetic pathway of the phytohormone indole-3-acetic acid in the plant-beneficial Bacillus amyloliquefaciens SQR9. Microbial cell factories\| PubMed ID: 26337367	2015
Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates. BMC genomics\| PubMed ID: 26346121	2015
Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health. Nature communications\| PubMed ID: 26400552
Root aeration improves growth and nitrogen accumulation in rice seedlings under low nitrogen. AoB PLANTS\| PubMed ID: 26578743	2015
Suppression on plant-parasitic nematodes using a soil fumigation strategy based on ammonium bicarbonate and its effects on the nematode community. Scientific reports\| PubMed ID: 26621630	2015
Spectral Exploration of Calcium Accumulation in Organic Matter in Gray Desert Soil from Northwest China. PloS one\| PubMed ID: 26751962	2016
Hydrolytic Amino Acids Employed as a Novel Organic Nitrogen Source for the Preparation of PGPF-Containing Bio-Organic Fertilizer for Plant Growth Promotion and Characterization of Substance ... PloS one\| PubMed ID: 26974549	2016
Soil ionomic and enzymatic responses and correlations to fertilizations amended with and without organic fertilizer in long-term experiments. Scientific reports\| PubMed ID: 27079657	2016
Response of tomato wilt pathogen Ralstonia solanacearum to the volatile organic compounds produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9. Scientific reports\| PubMed ID: 27103342	2016
Linking N2O emission from biochar-amended composting process to the abundance of denitrify (nirK and nosZ) bacteria community. AMB Express\| PubMed ID: 27207069	2016
Efficient Arsenic Methylation and Volatilization Mediated by a Novel Bacterium from an Arsenic-Contaminated Paddy Soil. Environmental science & technology\| PubMed ID: 27258163	2016
Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 27274069	2016
Continous application of bioorganic fertilizer induced resilient culturable bacteria community associated with banana Fusarium wilt suppression. Scientific reports\| PubMed ID: 27306096	2016
Quantitative and compositional responses of ammonia-oxidizing archaea and bacteria to long-term field fertilization. Scientific reports\| PubMed ID: 27356769	2016
The Interactions of Aquaporins and Mineral Nutrients in Higher Plants. International journal of molecular sciences\| PubMed ID: 27483251	2016
Effects of iron and boron combinations on the suppression of Fusarium wilt in banana. Scientific reports\| PubMed ID: 27941854	2016
Nitrate Increased Cucumber Tolerance to Fusarium Wilt by Regulating Fungal Toxin Production and Distribution. Toxins\| PubMed ID: 28287458	2017
The rice production practices of high yield and high nitrogen use efficiency in Jiangsu, China. Scientific reports\| PubMed ID: 28522870	2017
PGPR strain Paenibacillus polymyxa SQR-21 potentially benefits watermelon growth by re-shaping root protein expression. AMB Express\| PubMed ID: 28549372	2017
Improving rice population productivity by reducing nitrogen rate and increasing plant density. PloS one\| PubMed ID: 28767723	2017
Wilted cucumber plants infected by Fusarium oxysporum f. sp. cucumerinum do not suffer from water shortage. Annals of botany\| PubMed ID: 28911018	2017
Soil protist communities form a dynamic hub in the soil microbiome. The ISME journal\| PubMed ID: 29028001	2018
Seasonal variation in the biocontrol efficiency of bacterial wilt is driven by temperature-mediated changes in bacterial competitive interactions. The Journal of applied ecology\| PubMed ID: 29081539
Isolation of Antagonistic Endophytes from Banana Roots against and Their Effects on Soil Nematode Community. Frontiers in microbiology\| PubMed ID: 29123509	2017
Arsenic methylation by a novel ArsM As(III) S-adenosylmethionine methyltransferase that requires only two conserved cysteine residues. Molecular microbiology\| PubMed ID: 29134708	2018
Aquaporin Expression and Water Transport Pathways inside Leaves Are Affected by Nitrogen Supply through Transpiration in Rice Plants. International journal of molecular sciences\| PubMed ID: 29337869	2018
Role of Aquaporins in Determining Carbon and Nitrogen Status in Higher Plants. International journal of molecular sciences\| PubMed ID: 29342938	2018
ResDE Two-Component Regulatory System Mediates Oxygen Limitation-Induced Biofilm Formation by Bacillus amyloliquefaciens SQR9. Applied and environmental microbiology\| PubMed ID: 29427424	2018
Effect of CBM1 and linker region on enzymatic properties of a novel thermostable dimeric GH10 xylanase (Xyn10A) from filamentous fungus Aspergillus fumigatus Z5. AMB Express\| PubMed ID: 29564574	2018
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. PLoS genetics\| PubMed ID: 29630596	2018
Is Nitrogen a Key Determinant of Water Transport and Photosynthesis in Higher Plants Upon Drought Stress? Frontiers in plant science\| PubMed ID: 30186291	2018
Application of Bacillus velezensis NJAU-Z9 Enhanced Plant Growth Associated with Efficient Rhizospheric Colonization Monitored by qPCR with Primers Designed from the Whole Genome Sequence. Current microbiology\| PubMed ID: 30194479	2018
Root exudates drive the soil-borne legacy of aboveground pathogen infection. Microbiome\| PubMed ID: 30208962	2018
Wall Teichoic Acids Are Required for Biofilm Formation and Root Colonization. Applied and environmental microbiology\| PubMed ID: 30552189	2019
Effects of amino acids on the lignocellulose degradation by Z5: insights into performance, transcriptional, and proteomic profiles. Biotechnology for biofuels\| PubMed ID: 30622646	2019
Biotransformation of arsenic-containing roxarsone by an aerobic soil bacterium Enterobacter sp. CZ-1. Environmental pollution (Barking, Essex : 1987)\| PubMed ID: 30703681	2019
Long-term fertilization regimes change soil nitrification potential by impacting active autotrophic ammonia oxidizers and nitrite oxidizers as assessed by DNA stable isotope probing. Environmental microbiology\| PubMed ID: 30724443	2019
Historical Nitrogen Deposition and Straw Addition Facilitate the Resistance of Soil Multifunctionality to Drying-Wetting Cycles. Applied and environmental microbiology\| PubMed ID: 30737352	2019
Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi. Environmental microbiology\| PubMed ID: 30815928	2019
Lime and ammonium carbonate fumigation coupled with bio-organic fertilizer application steered banana rhizosphere to assemble a unique microbiome against Panama disease. Microbial biotechnology\| PubMed ID: 30838803	2019
Potassium mediates coordination of leaf photosynthesis and hydraulic conductance by modifications of leaf anatomy. Plant, cell & environment\| PubMed ID: 30938459	2019
Resource stoichiometry shapes community invasion resistance via productivity-mediated species identity effects. Proceedings. Biological sciences\| PubMed ID: 30963908
A genomic island in a plant beneficial rhizobacterium encodes novel antimicrobial fatty acids and a self-protection shield to enhance its competition. Environmental microbiology\| PubMed ID: 31106958	2019
Key extracellular enzymes triggered high-efficiency composting associated with bacterial community succession. Bioresource technology\| PubMed ID: 31176934	2019
Evolution and comparative genomics of the most common Trichoderma species. BMC genomics\| PubMed ID: 31189469	2019
High-throughput absolute quantification sequencing reveals the effect of different fertilizer applications on bacterial community in a tomato cultivated coastal saline soil. The Science of the total environment\| PubMed ID: 31220714	2019
Diversity-triggered deterministic bacterial assembly constrains community functions. Nature communications\| PubMed ID: 31444343	2019
Stable Microbial Community and Specific Beneficial Taxa Associated. Journal of microbiology and biotechnology\| PubMed ID: 31474083	2019
TgSWO from Trichoderma guizhouense NJAU4742 promotes growth in cucumber plants by modifying the root morphology and the cell wall architecture. Microbial cell factories\| PubMed ID: 31481065	2019
Effects of foliar application of amino acid liquid fertilizers, with or without Bacillus amyloliquefaciens SQR9, on cowpea yield and leaf microbiota. PloS one\| PubMed ID: 31483848	2019
Predominance of soil vs root effect in rhizosphere microbiota reassembly. FEMS microbiology ecology\| PubMed ID: 31504451	2019
Dynamics of metal(loid) resistance genes driven by succession of bacterial community during manure composting. Environmental pollution (Barking, Essex : 1987)\| PubMed ID: 31563779	2019
Initial soil microbiome composition and functioning predetermine future plant health. Science advances\| PubMed ID: 31579818
Antibiotic Bacillomycin D Affects Iron Acquisition and Biofilm Formation in Bacillus velezensis through a Btr-Mediated FeuABC-Dependent Pathway. Cell reports\| PubMed ID: 31665633	2019
Two-step genomic sequence comparison strategy to design Trichoderma strain-specific primers for quantitative PCR. AMB Express\| PubMed ID: 31707479	2019
Highly reactive nanomineral assembly in soil colloids: Implications for paddy soil carbon storage. The Science of the total environment\| PubMed ID: 31759715	2020
Soil fungal assemblage complexity is dependent on soil fertility and dominated by deterministic processes. The New phytologist\| PubMed ID: 31778576	2020
Deciphering Underlying Drivers of Disease Suppressiveness Against Pathogenic . Frontiers in microbiology\| PubMed ID: 31781059	2019
Phage combination therapies for bacterial wilt disease in tomato. Nature biotechnology\| PubMed ID: 31792408
Induced root-secreted D-galactose functions as a chemoattractant and enhances the biofilm formation of Bacillus velezensis SQR9 in an McpA-dependent manner. Applied microbiology and biotechnology\| PubMed ID: 31813049	2020
Enzymatic activities triggered by the succession of microbiota steered fiber degradation and humification during co-composting of chicken manure and rice husk. Journal of environmental management\| PubMed ID: 31929056	2020
Proteomic analysis reflects an environmental alkalinization-coupled pH-dependent mechanism of regulating lignocellulases in NJAU4742. Biotechnology for biofuels\| PubMed ID: 31938041	2020
DNA Stable-Isotope Probing Delineates Carbon Flows from Rice Residues into Soil Microbial Communities Depending on Fertilization. Applied and environmental microbiology\| PubMed ID: 31953339	2020
Unravelling the Roles of Nitrogen Nutrition in Plant Disease Defences. International journal of molecular sciences\| PubMed ID: 31963138	2020
Rhizosphere protists are key determinants of plant health. Microbiome\| PubMed ID: 32127034
Bacterial community richness shifts the balance between volatile organic compound-mediated microbe-pathogen and microbe-plant interactions. Proceedings. Biological sciences\| PubMed ID: 32290797
High abundance of Ralstonia solanacearum changed tomato rhizosphere microbiome and metabolome. BMC plant biology\| PubMed ID: 32293273	2020
The Evolutionary and Functional Paradox of Cerato-platanins in Fungi. Applied and environmental microbiology\| PubMed ID: 32332135	2020
Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature microbiology\| PubMed ID: 32393858
Pan-Genome Analyses of spp. Reveal Genetic Characteristics and Composting Potential. International journal of molecular sciences\| PubMed ID: 32403359	2020
Rhizosphere microbiome functional diversity and pathogen invasion resistance build up during plant development. Environmental microbiology\| PubMed ID: 32458448
Bacterial Tomato Pathogen Invasion Modulates Rhizosphere Compounds and Facilitates the Cascade Effect of Fungal Pathogen . Microorganisms\| PubMed ID: 32471167	2020
Plant Grafting Shapes Complexity and Co-occurrence of Rhizobacterial Assemblages. Microbial ecology\| PubMed ID: 32514604	2020
Microbial community composition turnover and function in the mesophilic phase predetermine chicken manure composting efficiency. Bioresource technology\| PubMed ID: 32540690	2020
Soil Carbon, Nitrogen, and Phosphorus Cycling Microbial Populations and Their Resistance to Global Change Depend on Soil C:N:P Stoichiometry. mSystems\| PubMed ID: 32606023	2020
Siderophore-Mediated Interactions Determine the Disease Suppressiveness of Microbial Consortia. mSystems\| PubMed ID: 32606030
Evolutionary compromises in fungal fitness: hydrophobins can hinder the adverse dispersal of conidiospores and challenge their survival. The ISME journal\| PubMed ID: 32632264	2020
Long-Term Chemical-Only Fertilization Induces a Diversity Decline and Deep Selection on the Soil Bacteria. mSystems\| PubMed ID: 32665327	2020
Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt. The ISME journal\| PubMed ID: 32681158	2020
Insights into the functionality of fungal community during the large scale aerobic co-composting process of swine manure and rice straw. Journal of environmental management\| PubMed ID: 32721362	2020
Dynamics of the antibiotic resistome in agricultural soils amended with different sources of animal manures over three consecutive years. Journal of hazardous materials\| PubMed ID: 32763695	2021
Bacterial ecosystem functioning in organic matter biodegradation of different composting at the thermophilic phase. Bioresource technology\| PubMed ID: 32799086	2020
The functioning of a novel protein, Swollenin, in promoting the lignocellulose degradation capacity of Trichoderma guizhouense NJAU4742 from a proteomic perspective. Bioresource technology\| PubMed ID: 32799087	2020
The Growth Promotion of Peppers ( L.) by NJAU4742-Based Biological Organic Fertilizer: Possible Role of Increasing Nutrient Availabilities. Microorganisms\| PubMed ID: 32854346	2020
Genomic and Transcriptome Analyses of a Thermophilic Bacterium B5 Isolated from Compost Reveal Its Enzymatic Basis for Lignocellulose Degradation. Microorganisms\| PubMed ID: 32899798	2020
Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression. Microbiome\| PubMed ID: 32962766	2020
Azaphilones biosynthesis complements the defence mechanism of Trichoderma guizhouense against oxidative stress. Environmental microbiology\| PubMed ID: 32985773	2020
Enrichment of beneficial cucumber rhizosphere microbes mediated by organic acid secretion. Horticulture research\| PubMed ID: 33082961	2020
Root exudates drive soil-microbe-nutrient feedbacks in response to plant growth. Plant, cell & environment\| PubMed ID: 33103781	2021
The cross-kingdom roles of mineral nutrient transporters in plant-microbe relations. Physiologia plantarum\| PubMed ID: 33341944	2021
Contributions of the biochemical factors and bacterial community to the humification process of in situ large-scale aerobic composting. Bioresource technology\| PubMed ID: 33373802	2021
[Effects of lime and ammonium carbonate fumigation coupled with bio-organic fertilizer application on banana fusarium wilt and bacterial community.]. Ying yong sheng tai xue bao = The journal of applied ecology\| PubMed ID: 33393257	2020
Proteomic Analysis Demonstrates a Molecular Dialog Between NJAU 4742 and Cucumber () Roots: Role in Promoting Plant Growth. Molecular plant-microbe interactions : MPMI\| PubMed ID: 33496609	2021
Specialized metabolic functions of keystone taxa sustain soil microbiome stability. Microbiome\| PubMed ID: 33517892	2021
Plasma membrane H-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis. Nature communications\| PubMed ID: 33531490	2021
At least three families of hyphosphere small secreted cysteine-rich proteins can optimize surface properties to a moderately hydrophilic state suitable for fungal attachment. Environmental microbiology\| PubMed ID: 33538393	2021
Volatile compounds from beneficial rhizobacteria Bacillus spp. promote periodic lateral root development in Arabidopsis. Plant, cell & environment\| PubMed ID: 33548150	2021
Functional characterization of a novel copper-dependent lytic polysaccharide monooxygenase TgAA11 from Trichoderma guizhouense NJAU 4742 in the oxidative degradation of chitin. Carbohydrate polymers\| PubMed ID: 33593577	2021
A global overview of the trophic structure within microbiomes across ecosystems. Environment international\| PubMed ID: 33621916	2021
Seed-borne, endospheric and rhizospheric core microbiota as predictors of plant functional traits across rice cultivars are dominated by deterministic processes. The New phytologist\| PubMed ID: 33626176	2021
Protists as main indicators and determinants of plant performance. Microbiome\| PubMed ID: 33743825	2021
Overcoming diverse homologous recombinations and single chimeric guide RNA competitive inhibition enhances Cas9-based cyclical multiple genes coediting in filamentous fungi. Environmental microbiology\| PubMed ID: 33754479	2021
A new atypical short-chain dehydrogenase is required for interfungal combat and conidiation in Trichoderma guizhouense. Environmental microbiology\| PubMed ID: 33788384	2021
Rare Bacteria Assembly in Soils Is Mainly Driven by Deterministic Processes. Microbial ecology\| PubMed ID: 33792742	2022
Soil fungal community affected by regional climate played an important role in the decomposition of organic compost. Environmental research\| PubMed ID: 33794176	2021
Isolation of a novel psychrotrophic fungus for efficient low-temperature composting. Bioresource technology\| PubMed ID: 33798862	2021
Livestock Manure Type Affects Microbial Community Composition and Assembly During Composting. Frontiers in microbiology\| PubMed ID: 33828537	2021
Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum. NPJ biofilms and microbiomes\| PubMed ID: 33846334	2021
Participating mechanism of a major contributing gene ysnE for auxin biosynthesis in Bacillus amyloliquefaciens SQR9. Journal of basic microbiology\| PubMed ID: 33914927	2021
Manipulating the soil microbiomes during a community recovery process with plant beneficial species for the suppression of Fusarium wilt of watermelon. AMB Express\| PubMed ID: 34117935	2021
Nitrate mediated resistance against Fusarium infection in cucumber plants acts via photorespiration. Plant, cell & environment\| PubMed ID: 34181268	2021
Chemotaxis of Beneficial Rhizobacteria to Root Exudates: The First Step towards Root-Microbe Rhizosphere Interactions. International journal of molecular sciences\| PubMed ID: 34206311	2021
Compositional and functional succession of bacterial and fungal communities is associated with changes in abiotic properties during pig manure composting. Waste management (New York, N.Y.)\| PubMed ID: 34237529	2021
The addition of sawdust reduced the emission of nitrous oxide in pig manure composting by altering the bacterial community structure and functions. Environmental science and pollution research international\| PubMed ID: 34392479	2022
Extended Plant Metarhizobiome: Understanding Volatile Organic Compound Signaling in Plant-Microbe Metapopulation Networks. mSystems\| PubMed ID: 34427518	2021
Comprehensive analysis of the regulatory network of blue-light-regulated conidiation and hydrophobin production in Trichoderma guizhouense. Environmental microbiology\| PubMed ID: 34472181	2021
Potassium Phosphite Enhances the Antagonistic Capability of to Manage Tomato Bacterial Wilt. Plant disease\| PubMed ID: 34491099	2022
Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions. The ISME journal\| PubMed ID: 34593997	2022
Microbial generalist or specialist: Intraspecific variation and dormancy potential matter. Molecular ecology\| PubMed ID: 34626522	2022
Development of fungal-mediated soil suppressiveness against Fusarium wilt disease via plant residue manipulation. Microbiome\| PubMed ID: 34635164	2021
Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome. Proceedings. Biological sciences\| PubMed ID: 34641724	2021
Indirect reduction of Ralstonia solanacearum via pathogen helper inhibition. The ISME journal\| PubMed ID: 34671104	2022
Identification of Adhesins in Plant Beneficial Rhizobacteria SQR9 and Their Effect on Root Colonization. Molecular plant-microbe interactions : MPMI\| PubMed ID: 34698535	2022
Rhizosphere microbiome: Functional compensatory assembly for plant fitness. Computational and structural biotechnology journal\| PubMed ID: 34712394	2021
The pleiotropic functions of intracellular hydrophobins in aerial hyphae and fungal spores. PLoS genetics\| PubMed ID: 34788288	2021
The volatile cedrene from Trichoderma guizhouense modulates Arabidopsis root development through auxin transport and signalling. Plant, cell & environment\| PubMed ID: 34800291	2022
Functions of silicon in plant drought stress responses. Horticulture research\| PubMed ID: 34848683	2021
Nitrogen fertilization modulates beneficial rhizosphere interactions through signaling effect of nitric oxide. Plant physiology\| PubMed ID: 34865137	2022
Organic amendments alleviate early defoliation and increase fruit yield by altering assembly patterns and of microbial communities and enzymatic activities in sandy pear (Pyrus pyrifolia). AMB Express\| PubMed ID: 34878599	2021
Modulation of the Tomato Rhizosphere Microbiome via Changes in Root Exudation Mediated by the Ethylene Receptor NR. Microorganisms\| PubMed ID: 34946058	2021
-milRNA1 Contributes to Lignocellulase Secretion under Heat Stress by Regulating the Lectin-Type Cargo Receptor Gene in NJAU 4742. Journal of fungi (Basel, Switzerland)\| PubMed ID: 34946980	2021
A Simple and Low-Cost Strategy to Improve Conidial Yield and Stress Resistance of through Optimizing Illumination Conditions. Journal of fungi (Basel, Switzerland)\| PubMed ID: 35049990	2022
Biosynthetic gene cluster profiling predicts the positive association between antagonism and phylogeny in Bacillus. Nature communications\| PubMed ID: 35197480	2022
Prevalent and highly mobile antibiotic resistance genes in commercial organic fertilizers. Environment international\| PubMed ID: 35219935	2022
Pedogenesis shapes predator-prey relationships within soil microbiomes. The Science of the total environment\| PubMed ID: 35276178	2022
Meta-analysis of diazotrophic signatures across terrestrial ecosystems at the continental scale. Environmental microbiology\| PubMed ID: 35362656	2022
Trophic interactions between predatory protists and pathogen-suppressive bacteria impact plant health. The ISME journal\| PubMed ID: 35461357	2022
The functions of potential intermediates and fungal communities involved in the humus formation of different materials at the thermophilic phase. Bioresource technology\| PubMed ID: 35472639	2022
[Effects of reducing chemical fertilizers combined with organic fertilizers on soil microbial community in litchi orchards]. Ying yong sheng tai xue bao = The journal of applied ecology\| PubMed ID: 35543065	2022
Molecular Trade-Offs between Lattice Oxygen and Oxygen Vacancy Drive Organic Pollutant Degradation in Fungal Biomineralized Exoskeletons. Environmental science & technology\| PubMed ID: 35561278	2022
Bio-organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities. The New phytologist\| PubMed ID: 35569105	2022
Long-term manure inputs induce a deep selection on agroecosystem soil antibiotic resistome. Journal of hazardous materials\| PubMed ID: 35739703	2022
Trichoderma-amended biofertilizer stimulates soil resident Aspergillus population for joint plant growth promotion. NPJ biofilms and microbiomes\| PubMed ID: 35831320	2022
Long-Term Organic-Inorganic Fertilization Regimes Alter Bacterial and Fungal Communities and Rice Yields in Paddy Soil. Frontiers in microbiology\| PubMed ID: 35832816	2022
Exploring the multi-level regulation of lignocellulases in the filamentous fungus Trichoderma guizhouense NJAU4742 from an omics perspective. Microbial cell factories\| PubMed ID: 35842666	2022
Signal binding at both modules of its dCache domain enables the McpA chemoreceptor of to sense different ligands. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 35858353	2022
Small changes in rhizosphere microbiome composition predict disease outcomes earlier than pathogen density variations. The ISME journal\| PubMed ID: 35869387	2022
Organic fertilization enhances the resistance and resilience of soil microbial communities under extreme drought. Journal of advanced research\| PubMed ID: 35907631	2023
Deciphering the effect of exogenous lignocellulases addition on the composting efficiency and microbial communities. Bioresource technology\| PubMed ID: 35940325	2022
Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions. Environmental microbiology\| PubMed ID: 36053873	2022
Characterization of an Exceptional Fungal Mutant Enables the Discovery of the Specific Regulator of a Silent PKS-NRPS Hybrid Biosynthetic Pathway. Journal of agricultural and food chemistry\| PubMed ID: 36084284	2022
Microbial generalists and specialists differently contribute to the community diversity in farmland soils. Journal of advanced research\| PubMed ID: 36100325	2022
Soil antibiotic abatement associates with the manipulation of soil microbiome via long-term fertilizer application. Journal of hazardous materials\| PubMed ID: 36104920	2022
Shared Core Microbiome and Functionality of Key Taxa Suppressive to Banana Fusarium Wilt. Research (Washington, D.C.)\| PubMed ID: 36204250	2022
Specific metabolites drive the deterministic assembly of diseased rhizosphere microbiome through weakening microbial degradation of autotoxin. Microbiome\| PubMed ID: 36271396	2022
Housekeeping gene gyrA, a potential molecular marker for Bacillus ecology study. AMB Express\| PubMed ID: 36287351	2022
Partitioning the Effects of Soil Legacy and Pathogen Exposure Determining Soil Suppressiveness via Induced Systemic Resistance. Plants (Basel, Switzerland)\| PubMed ID: 36365269	2022
Intracellular kynurenine promotes acetaldehyde accumulation, further inducing the apoptosis in soil beneficial fungi Trichoderma guizhouense NJAU4742 under acid stress. Environmental microbiology\| PubMed ID: 36367399	2023
High-temperature adaptation of an allele is thermoregulated by small RNAs. Science advances\| PubMed ID: 36417515	2022
Bio-Organic Fertilizer Promotes Pear Yield by Shaping the Rhizosphere Microbiome Composition and Functions. Microbiology spectrum\| PubMed ID: 36453930	2022
Sustained Inhibition of Maize Seed-Borne Fusarium Using a Bacillus-Dominated Rhizospheric Stable Core Microbiota with Unique Cooperative Patterns. Advanced science (Weinheim, Baden-Wurttemberg, Germany)\| PubMed ID: 36529951	2023
Bacterial volatile organic compounds attenuate pathogen virulence via evolutionary trade-offs. The ISME journal\| PubMed ID: 36635489	2023
Chemical communication in plant-microbe beneficial interactions: a toolbox for precise management of beneficial microbes. Current opinion in microbiology\| PubMed ID: 36682279	2023
Rhizosphere suppression hinders antibiotic resistance gene (ARG) spread under bacterial invasion. One health (Amsterdam, Netherlands)\| PubMed ID: 36683960	2023
Elevated temperature and CO strongly affect the growth strategies of soil bacteria. Nature communications\| PubMed ID: 36693873	2023
Rhizosphere phage communities drive soil suppressiveness to bacterial wilt disease. Microbiome\| PubMed ID: 36721270	2023
Additive fungal interactions drive biocontrol of Fusarium wilt disease. The New phytologist\| PubMed ID: 36740577	2023
Root-Associated Antagonistic Pseudomonas spp. Contribute to Soil Suppressiveness against Banana Fusarium Wilt Disease of Banana. Microbiology spectrum\| PubMed ID: 36786644	2023
[Effects of partial substitution of chemical fertilizer with organic fertilizer on arbuscular mycorrhizal fungal community of ]. Ying yong sheng tai xue bao = The journal of applied ecology\| PubMed ID: 36803726	2023
Emerging Pathways for Engineering the Rhizosphere Microbiome for Optimal Plant Health. Journal of agricultural and food chemistry\| PubMed ID: 36890647	2023
Growth substrates alter aboveground plant microbial and metabolic properties thereby influencing insect herbivore performance. Science China. Life sciences\| PubMed ID: 36932313	2023
Deciphering the mechanism of fungal pathogen-induced disease-suppressive soil. The New phytologist\| PubMed ID: 36932631	2023
Plant pathogen resistance is mediated by recruitment of specific rhizosphere fungi. The ISME journal\| PubMed ID: 37037925	2023
The distinct plastisphere microbiome in the terrestrial-marine ecotone is a reservoir for putative degraders of petroleum-based polymers. Journal of hazardous materials\| PubMed ID: 37062095	2023
A toxin-mediated policing system in optimizes division of labor via penalizing cheater-like nonproducers. eLife\| PubMed ID: 37096874	2023
The best practice for microbiome analysis using R. Protein & cell\| PubMed ID: 37128855	2023
Bacillus velezensis SQR9 inhibition to fungal denitrification responsible for decreased NO emissions from acidic soils. The Science of the total environment\| PubMed ID: 37146817	2023
Rhizosphere Microbiota Promotes the Growth of Soybeans in a Saline-Alkali Environment under Plastic Film Mulching. Plants (Basel, Switzerland)\| PubMed ID: 37176946	2023
Beneficial Rhizobacterium Triggers Induced Systemic Resistance of Maize to Gibberella Stalk Rot via Calcium Signaling. Molecular plant-microbe interactions : MPMI\| PubMed ID: 37188493	2023
Learning from Seed Microbes: Coating Intervenes in Rhizosphere Microbiome Assembly. Microbiology spectrum\| PubMed ID: 37195176	2023
Plant commensal type VII secretion system causes iron leakage from roots to promote colonization. Nature microbiology\| PubMed ID: 37248429	2023
DCiPatho: deep cross-fusion networks for genome scale identification of pathogens. Briefings in bioinformatics\| PubMed ID: 37249547	2023
Listening to plant's Esperanto via root exudates: reprogramming the functional expression of plant growth-promoting rhizobacteria. The New phytologist\| PubMed ID: 37357338	2023
Novel fatty acids-governed cannibalism in beneficial rhizosphere Bacillus enhances biofilm formation via a two-component system OmpS/R and toxin transporter. Science bulletin\| PubMed ID: 37402603	2023
Biodiversity of the beneficial soil-borne fungi steered by Trichoderma-amended biofertilizers stimulates plant production. NPJ biofilms and microbiomes\| PubMed ID: 37407614	2023
Microbial carbon use efficiency in different ecosystems: A meta-analysis based on a biogeochemical equilibrium model. Global change biology\| PubMed ID: 37431700	2023
Large-scale exploration of nitrogen utilization efficiency in Asia region for rice crop: Variation patterns and determinants. Global change biology\| PubMed ID: 37431724	2023
Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. Nature communications\| PubMed ID: 37495619	2023
Risk assessment and dissemination mechanism of antibiotic resistance genes in compost. Environment international\| PubMed ID: 37562342	2023
RIN enhances plant disease resistance via root exudate-mediated assembly of disease-suppressive rhizosphere microbiota. Molecular plant\| PubMed ID: 37563832	2023
Engineering multifunctional rhizosphere probiotics using consortia of transposon insertion mutants. eLife\| PubMed ID: 37706503	2023
Effect of inoculating thermophilic bacterial consortia on compost efficiency and quality. Waste management (New York, N.Y.)\| PubMed ID: 37748282	2023
Tomato growth stage modulates bacterial communities across different soil aggregate sizes and disease levels. ISME communications\| PubMed ID: 37752280	2023
Biocontrol mechanisms of Bacillus: Improving the efficiency of green agriculture. Microbial biotechnology\| PubMed ID: 37837627	2023
Rhizosphere shapes the associations between protistan predators and bacteria within microbiomes through the deterministic selection on bacterial communities. Environmental microbiology\| PubMed ID: 37849426	2023
sp. nov., isolated from biochemical tank sludge. International journal of systematic and evolutionary microbiology\| PubMed ID: 37888849	2023
Cysteine facilitates the lignocellulolytic response of Trichoderma guizhouense NJAU4742 by indirectly up-regulating membrane sugar transporters. Biotechnology for biofuels and bioproducts\| PubMed ID: 37891614	2023
Exploring rhizo-microbiome transplants as a tool for protective plant-microbiome manipulation. ISME communications\| PubMed ID: 37938685	2022
Application of coronarin enhances maize drought tolerance by affecting interactions between rhizosphere fungal community and metabolites. Computational and structural biotechnology journal\| PubMed ID: 37954150	2023
Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. mSystems\| PubMed ID: 37971263	2023
gen. nov., sp. nov., a novel bacterium isolated from activated sludge, and proposal of fam. nov. International journal of systematic and evolutionary microbiology\| PubMed ID: 37991220	2023
sp. nov., isolated from the intestine of swordfish . International journal of systematic and evolutionary microbiology\| PubMed ID: 37991223	2023
sp. nov., isolated from sediment of East Taihu Lake. International journal of systematic and evolutionary microbiology\| PubMed ID: 38015206	2023
Discovery of Novel DHFR Inhibitors as Fungicides Using Virtual Screening. Journal of agricultural and food chemistry\| PubMed ID: 38038282	2023
sp. nov., isolated from sediment. International journal of systematic and evolutionary microbiology\| PubMed ID: 38054484	2023
Root colonization by beneficial rhizobacteria. FEMS microbiology reviews\| PubMed ID: 38093453	2024
Nutrient status changes bacterial interactions in a synthetic community. Applied and environmental microbiology\| PubMed ID: 38126758	2024
Effects of plant tissue permeability on invasion and population bottlenecks of a phytopathogen. Nature communications\| PubMed ID: 38167266	2024
Inhibition of pathogenic microorganisms in solid organic waste via black soldier fly larvae-mediated management. The Science of the total environment\| PubMed ID: 38176562	2024
Microbe-induced phenotypic variation leads to overyielding in clonal plant populations. Nature ecology & evolution\| PubMed ID: 38195997	2024
Predatory protists reduce bacteria wilt disease incidence in tomato plants. Nature communications\| PubMed ID: 38280866	2024
Assemblages of rhizospheric and root endospheric mycobiota and their ecological associations with functional traits of rice. mBio\| PubMed ID: 38319112	2024
Paenibacillus lacisoli sp. nov., a mesotrione-degrading strain isolated from lakeside soil. Antonie van Leeuwenhoek\| PubMed ID: 38329631	2024
Protist predation selects for the soil resistome. The ISME journal\| PubMed ID: 38365252	2024
Active microbial population dynamics and life strategies drive the enhanced carbon use efficiency in high-organic matter soils. mBio\| PubMed ID: 38376207	2024
Nonpathogenic Pseudomonas syringae derivatives and its metabolites trigger the plant "cry for help" response to assemble disease suppressing and growth promoting rhizomicrobiome. Nature communications\| PubMed ID: 38429257	2024
CFViSA: A comprehensive and free platform for visualization and statistics in omics-data. Computers in biology and medicine\| PubMed ID: 38430745	2024
Dissection of rhizosphere microbiome and exploiting strategies for sustainable agriculture. The New phytologist\| PubMed ID: 38494698	2024
Phage selection drives resistance-virulence trade-offs in plant-pathogenic bacterium irrespective of the growth temperature. Evolution letters\| PubMed ID: 38525025	2024
gen. nov., sp. nov., a novel taxon within the family isolated from sludge. International journal of systematic and evolutionary microbiology\| PubMed ID: 38530752	2024
gen. nov., sp. nov., isolated from river sediment represents a novel genus of the family . International journal of systematic and evolutionary microbiology\| PubMed ID: 38546460	2024
Trichoderma-secreted anthranilic acid promotes lateral root development via auxin signaling and RBOHF-induced endodermal cell wall remodeling. Cell reports\| PubMed ID: 38551966	2024
Bacillus velezensis SQR9 promotes plant growth through colonization and rhizosphere-phyllosphere bacteria interaction. Environmental microbiology reports\| PubMed ID: 38575119	2024
Carbon starvation raises capacities in bacterial antibiotic resistance and viral auxiliary carbon metabolism in soils. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 38598339	2024
gen. nov., sp. nov., a novel taxon within the family isolated from sediment of a river. International journal of systematic and evolutionary microbiology\| PubMed ID: 38634749	2024
Cellular ATP redistribution achieved by deleting Tgparp improves lignocellulose utilization of Trichoderma under heat stress. Biotechnology for biofuels and bioproducts\| PubMed ID: 38637859	2024
Warming and altered precipitation independently and interactively suppress alpine soil microbial growth in a decadal-long experiment. eLife\| PubMed ID: 38647539	2024
Methionine inducing carbohydrate esterase secretion of Trichoderma harzianum enhances the accessibility of substrate glycosidic bonds. Microbial cell factories\| PubMed ID: 38664812	2024
gen. nov., sp. nov., a novel taxon within the family isolated from sediment of Qiantang River. International journal of systematic and evolutionary microbiology\| PubMed ID: 38668744	2024
The role of rhizosphere phages in soil health. FEMS microbiology ecology\| PubMed ID: 38678007	2024
Emerging contaminants: A One Health perspective. Innovation (Cambridge (Mass.))\| PubMed ID: 38756954	2024
gen. nov., sp. nov., a novel taxon within the family isolated from sludge of a pesticide-manufacturing factory. International journal of systematic and evolutionary microbiology\| PubMed ID: 38767617	2024
Red and far-red light improve the antagonistic ability of Trichoderma guizhouense against phytopathogenic fungi by promoting phytochrome-dependent aerial hyphal growth. PLoS genetics\| PubMed ID: 38768261	2024
Phages enhance both phytopathogen density control and rhizosphere microbiome suppressiveness. mBio\| PubMed ID: 38780276	2024