Daniela Maria Cirillo

Emerging Bacterial Pathogens Unit, IRCCS San Raffaele Scientific Institute

Affiliated withIRCCS San Raffaele Scientific Institute

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 3	2025

Other Publications

Article	Year
Unusual mycobacterial interspersed repetitive-unit alleles in loci 580 and 4348 among Mycobacterium tuberculosis isolates in Albania. Journal of clinical microbiology\| PubMed ID: 25253800	2014
Epidemic MRSA clone ST22-IV is more resistant to multiple host- and environment-related stresses compared with ST228-I. The Journal of antimicrobial chemotherapy\| PubMed ID: 25428923	2015
Target product profile of a molecular drug-susceptibility test for use in microscopy centers. The Journal of infectious diseases\| PubMed ID: 25765105	2015
Universal health coverage and social support in Senegal: a comprehensive approach against tuberculosis. The European respiratory journal\| PubMed ID: 25882809	2015
Clostridium difficile PCR Ribotype 018, a Successful Epidemic Genotype. Journal of clinical microbiology\| PubMed ID: 26041894	2015
Implementation of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Loci in Mycobacterium tuberculosis Molecular Epidemiology. Journal of clinical microbiology\| PubMed ID: 26659207	2016
Delamanid susceptibility testing of Mycobacterium tuberculosis using the resazurin microtitre assay and the BACTEC™ MGIT™ 960 system. The Journal of antimicrobial chemotherapy\| PubMed ID: 27076101	2016
Population-based resistance of Mycobacterium tuberculosis isolates to pyrazinamide and fluoroquinolones: results from a multicountry surveillance project. The Lancet. Infectious diseases\| PubMed ID: 27397590	2016
Preliminary data on precision of QuantiFERON-TB Plus performance. The European respiratory journal\| PubMed ID: 27581411	2016
First characterization of the CD4 and CD8 T-cell responses to QuantiFERON-TB Plus. The Journal of infection\| PubMed ID: 27717779	2016
From latent to patent: rethinking prediction of tuberculosis. The Lancet. Respiratory medicine\| PubMed ID: 28017341	2017
Mycobacterium aquaticum sp. nov., a rapidly growing species isolated from haemodialysis water. International journal of systematic and evolutionary microbiology\| PubMed ID: 28829035	2017
Evaluation of Mycobacterium tuberculosis viability in OMNIgene-SPUTUM reagent upon multi-day transport at ambient temperature. BMC infectious diseases\| PubMed ID: 28969600	2017
Culture and Next-generation sequencing-based drug susceptibility testing unveil high levels of drug-resistant-TB in Djibouti: results from the first national survey. Scientific reports\| PubMed ID: 29247181	2017
EUSeqMyTB to set standards and build capacity for whole genome sequencing for tuberculosis in the EU. The Lancet. Infectious diseases\| PubMed ID: 29582760	2018
Countrywide implementation of whole genome sequencing: an opportunity to improve tuberculosis management, surveillance and contact tracing in low incidence countries. The European respiratory journal\| PubMed ID: 29650560	2018
ERS/ECDC Statement: European Union standards for tuberculosis care, 2017 update. The European respiratory journal\| PubMed ID: 29678945	2018
An evaluation framework for new tests that predict progression from tuberculosis infection to clinical disease. The European respiratory journal\| PubMed ID: 30139776	2018
A case report of mucocutaneous tuberculosis after orthotopic liver transplantation: a challenging diagnosis. BMC infectious diseases\| PubMed ID: 30157783	2018
Screening for active and latent tuberculosis among asylum seekers in Italy: A retrospective cohort analysis. Travel medicine and infectious disease\| PubMed ID: 30347248	2019
Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis. Microbiology (Reading, England)\| PubMed ID: 30351270	2018
Implementing TB control in a rural, resource-limited setting: the stop-TB Italia project in Senegal. Multidisciplinary respiratory medicine\| PubMed ID: 30455883	2018
MTBseq: a comprehensive pipeline for whole genome sequence analysis of complex isolates. PeerJ\| PubMed ID: 30479891	2018
ASAP-GxNet project in Burkina Faso: fulfil country capacity gaps to ensure efficient utilisation of GeneXpert instruments in tuberculosis care and cascade. ERJ open research\| PubMed ID: 30723729	2019
Hospital outbreak due to Clostridium difficile ribotype 018 (RT018) in Southern Germany. International journal of medical microbiology : IJMM\| PubMed ID: 30879971	2019
Lack of association of novel mutation Asp397Gly in aftB gene with ethambutol resistance in clinical isolates of Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 30948176	2019
Isoniazid Resistance in Is a Heterogeneous Phenotype Composed of Overlapping MIC Distributions with Different Underlying Resistance Mechanisms. Antimicrobial agents and chemotherapy\| PubMed ID: 31010866	2019
Emergence of two novel sequence types (3366 and 3367) NDM-1- and OXA-48-co-producing K. pneumoniae in Italy. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology\| PubMed ID: 31165962	2019
App-based symptoms screening with Xpert MTB/RIF Ultra assay used for active tuberculosis detection in migrants at point of arrivals in Italy: The E-DETECT TB intervention analysis. PloS one\| PubMed ID: 31260481	2019
Acquisition of Cross-Resistance to Bedaquiline and Clofazimine following Treatment for Tuberculosis in Pakistan. Antimicrobial agents and chemotherapy\| PubMed ID: 31262765	2019
Corrigendum: Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of . Microbiology (Reading, England)\| PubMed ID: 31591955	2019
Guidance for Studies Evaluating the Accuracy of Rapid Tuberculosis Drug-Susceptibility Tests. The Journal of infectious diseases\| PubMed ID: 31593599	2019
Whole genome sequencing in . Annals of translational medicine\| PubMed ID: 31656776	2019
Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin\| PubMed ID: 31847944	2019
Treating Primary Arthroprosthesis Infection Caused by subsp. a. Case reports in infectious diseases\| PubMed ID: 31929923	2019
Prevalence and genetic profiles of isoniazid resistance in tuberculosis patients: A multicountry analysis of cross-sectional data. PLoS medicine\| PubMed ID: 31961877	2020
Validation of Bedaquiline Phenotypic Drug Susceptibility Testing Methods and Breakpoints: a Multilaboratory, Multicountry Study. Journal of clinical microbiology\| PubMed ID: 31969421	2020
EasyPrimer: user-friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on wzi gene for fast Klebsiella pneumoniae typing. Scientific reports\| PubMed ID: 31992749	2020
Accuracy of the QIAxcel Automated System for MIRU-VNTR Genotyping of in Two Limited Resource Settings. Journal of clinical medicine\| PubMed ID: 32024091	2020
MDR/XDR-TB management of patients and contacts: Challenges facing the new decade. The 2020 clinical update by the Global Tuberculosis Network. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 32032752	2020
Whole Genome Sequencing Results Associated with Minimum Inhibitory Concentrations of 14 Anti-Tuberculosis Drugs among Rifampicin-Resistant Isolates of from Iran. Journal of clinical medicine\| PubMed ID: 32046149	2020
Commemorating World TB Day 2020: "IT'S TIME" - It's time to End the Global TB Epidemic. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 32145464	2020
Comparison of core-genome MLST, coreSNP and PFGE methods for cluster analysis. Microbial genomics\| PubMed ID: 32149598	2020
Celebrating World Tuberculosis Day at the time of COVID-19. The European respiratory journal\| PubMed ID: 32241828	2020
Application of Targeted Next-Generation Sequencing Assay on a Portable Sequencing Platform for Culture-Free Detection of Drug-Resistant Tuberculosis from Clinical Samples. Journal of clinical microbiology\| PubMed ID: 32727827	2020
Use of a whole genome sequencing-based approach for surveillance in Europe in 2017-2019: an ECDC pilot study. The European respiratory journal\| PubMed ID: 32732329	2021
Antimicrobial susceptibility testing of Mycobacterium tuberculosis complex isolates - the EUCAST broth microdilution reference method for MIC determination. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 32750539	2020
What is the role of the EUCAST reference method for MIC testing of the Mycobacterium tuberculosis complex? Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 32768492	2020
Emapalumab treatment in an ADA-SCID patient with refractory hemophagocytic lymphohistiocytosis-related graft failure and disseminated bacillus Calmette-Guérin infection. Haematologica\| PubMed ID: 32817285	2021
Clinical management of a Nigerian patient affected by sickle cell disease with rare blood group and persistent SARS-CoV-2 positivity. EJHaem\| PubMed ID: 32838399	2020
Advantages and Challenges of Tailored Regimens for Drug-Resistant Tuberculosis: A StopTB Italia Look into the Future. Infection and drug resistance\| PubMed ID: 32848428	2020
The neglected role of Faith-based Organizations in prevention and control of COVID-19 in Africa. Transactions of the Royal Society of Tropical Medicine and Hygiene\| PubMed ID: 32853360	2020
Characterization of Genomic Variants Associated with Resistance to Bedaquiline and Delamanid in Naive Mycobacterium tuberculosis Clinical Strains. Journal of clinical microbiology\| PubMed ID: 32907992	2020
A New Model of Chronic Lung Infection in Immunocompetent Mice. International journal of molecular sciences\| PubMed ID: 32916885	2020
Genomic analysis of cardiac surgery-associated Mycobacterium chimaera infections in Italy. PloS one\| PubMed ID: 32976495	2020
Hepcidin levels predict Covid-19 severity and mortality in a cohort of hospitalized Italian patients. American journal of hematology\| PubMed ID: 33075189	2021
Preliminary observations on IGRA testing for TB infection in patients with severe COVID-19 eligible for immunosuppressive therapy. Respiratory medicine\| PubMed ID: 33186846	2020
Multicentre testing of the EUCAST broth microdilution reference method for MIC determination on Mycobacterium tuberculosis. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 33198949	2021
Applying a Standardized Approach to Strengthen Performances of GeneXpert Networks programme: lessons learned from Burkina Faso, 2019. ERJ open research\| PubMed ID: 33263036	2020
Repeatability and reproducibility of the wzi high resolution melting-based clustering analysis for Klebsiella pneumoniae typing. AMB Express\| PubMed ID: 33315212	2020
Framework for the evaluation of new tests for tuberculosis infection. The European respiratory journal\| PubMed ID: 33479110	2021
Tackling TB in migrants arriving at Europe's southern border. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 33713814	2021
Performance of the GenoType MTBDRsl V 2.0 for detecting second-line drugs resistance of Mycobacterium tuberculosis isolates in Tunisia. Research in microbiology\| PubMed ID: 33737037	2021
Integrative transnational analysis to dissect tuberculosis transmission events along the migratory route from Africa to Europe. Journal of travel medicine\| PubMed ID: 33822988	2021
Is deployement of diagnostic test alone enough? Comprehensive package of interventions to strengthen TB laboratory network: three years of experience in Burkina Faso. BMC infectious diseases\| PubMed ID: 33849486	2021
Tests for tuberculosis infection: landscape analysis. The European respiratory journal\| PubMed ID: 33875495	2021
Assessment of the GenoType MTBDRsl VER 2.0 compared to the phenotypic drug susceptibility testing and whole genome sequencing for the rapid detection of resistance to fluoroquinolone and sec... Archives of microbiology\| PubMed ID: 34032874	2021
Outbreak of pre- and extensively drug-resistant tuberculosis in northern Italy: urgency of cross-border, multidimensional, surveillance systems. The European respiratory journal\| PubMed ID: 34049944	2021
A PGE-MEF2A axis enables context-dependent control of inflammatory gene expression. Immunity\| PubMed ID: 34129840	2021
Is the new WHO definition of extensively drug-resistant tuberculosis easy to apply in practice? The European respiratory journal\| PubMed ID: 34215664	2021
Role of Epistasis in Amikacin, Kanamycin, Bedaquiline, and Clofazimine Resistance in Mycobacterium tuberculosis Complex. Antimicrobial agents and chemotherapy\| PubMed ID: 34460306	2021
Saliva molecular testing for SARS-CoV-2: simplifying the diagnosis without losing accuracy. The European respiratory journal\| PubMed ID: 34649973	2021
Population structure, biogeography and transmissibility of Mycobacterium tuberculosis. Nature communications\| PubMed ID: 34671035	2021
QIAreach QuantiFERON-TB for the diagnosis of infection. The European respiratory journal\| PubMed ID: 34675051	2022
microevolution of and transient emergence of _Ala63Pro mutation during treatment in a pre-XDR TB patient. The European respiratory journal\| PubMed ID: 34795042	2022
Anti-tuberculosis drug resistance in Slovakia, 2018-2019: The first whole-genome epidemiological study. Journal of clinical tuberculosis and other mycobacterial diseases\| PubMed ID: 35005254	2022
Detection of NDM-1/5 and OXA-48 co-producing extensively drug-resistant hypervirulent Klebsiella pneumoniae in Northern Italy. Journal of global antimicrobial resistance\| PubMed ID: 35017071	2022
Whole genome sequencing of isoniazid monoresistant clinical isolates of Mycobacterium tuberculosis reveals novel genetic polymorphisms. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 35158296	2022
Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes. Viruses\| PubMed ID: 35215992	2022
Utility of the Whole Genome Sequencing based methodologies in routine European tuberculosis reference laboratory network setting. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 35247779	2022
Ancient and recent differences in the intrinsic susceptibility of Mycobacterium tuberculosis complex to pretomanid. The Journal of antimicrobial chemotherapy\| PubMed ID: 35260883	2022
The 2021 WHO catalogue of complex mutations associated with drug resistance: A genotypic analysis. The Lancet. Microbe\| PubMed ID: 35373160	2022
Whole genome sequencing of multidrug-resistant Mycobacterium tuberculosis isolates collected in the Czech Republic, 2005-2020. Scientific reports\| PubMed ID: 35505072	2022
Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history. Genome medicine\| PubMed ID: 35689243	2022
Fragmentation of Healthcare Services as a Possible Determinant of the Low Completion for the Tuberculosis Cascade of Prevention among Asylum Seekers: Results from a Prospective Study with Hi... Pathogens (Basel, Switzerland)\| PubMed ID: 35745467	2022
Are mRNA based transcriptomic signatures ready for diagnosing tuberculosis in the clinic? - A review of evidence and the technological landscape. EBioMedicine\| PubMed ID: 35850011	2022
Integrated use of laboratory services for multiple infectious diseases in the WHO European Region during the COVID-19 pandemic and beyond. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin\| PubMed ID: 35866437	2022
Hypervariable-Locus Melting Typing: a Novel Approach for More Effective High-Resolution Melting-Based Typing, Suitable for Large Microbiological Surveillance Programs. Microbiology spectrum\| PubMed ID: 35913212	2022
Identification of a novel mutation involved in colistin resistance in Klebsiella pneumoniae through Next-Generation Sequencing (NGS) based approaches. The new microbiologica\| PubMed ID: 35920875	2022
Genomic features of in vitro selected mutants of Escherichia coli with decreased susceptibility to tigecycline. Journal of global antimicrobial resistance\| PubMed ID: 35933109	2022
Improving interferon-γ release assay interpretation: are IP-10 and MIG the solution? The European respiratory journal\| PubMed ID: 35948350	2022
Diagnostic Capacities for Multidrug-Resistant Tuberculosis in the World Health Organization European Region: Action is Needed by all Member States. The Journal of molecular diagnostics : JMD\| PubMed ID: 35964846	2022
Balancing access to BPaLM regimens and risk of resistance. The Lancet. Infectious diseases\| PubMed ID: 36007529	2022
Whole genome sequencing of Bulgarian rifampicin resistant strains. Folia medica\| PubMed ID: 36045474	2022
Transcriptional regulation and drug resistance in . Frontiers in cellular and infection microbiology\| PubMed ID: 36118045	2022
Designing molecular diagnostics for current tuberculosis drug regimens. Emerging microbes & infections\| PubMed ID: 36752055	2023
Towards clinical breakpoints for non-tuberculous mycobacteria - Determination of epidemiological cut off values for the Mycobacterium avium complex and Mycobacterium abscessus using broth mi... Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 36813087	2023
Advantages of long- and short-reads sequencing for the hybrid investigation of the genome. Frontiers in microbiology\| PubMed ID: 36819039	2023
Whole-genome sequence analysis of clinically isolated carbapenem resistant Escherichia coli from Iran. BMC microbiology\| PubMed ID: 36850019	2023
Implementing molecular tuberculosis diagnostic methods in limited-resource and high-burden countries. Breathe (Sheffield, England)\| PubMed ID: 36865933	2022
Community engagement in tuberculosis research: the EU-Patient-cEntric clinicAl tRial pLatforms (EU-PEARL) experience. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 36906120	2023
The effect of lineage on clinical phenotype. medRxiv : the preprint server for health sciences\| PubMed ID: 36993190	2023
Updating the WHO target product profile for next-generation Mycobacterium tuberculosis drug susceptibility testing at peripheral centres. PLOS global public health\| PubMed ID: 37000774	2023
Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis. The Lancet. Microbe\| PubMed ID: 37003285	2023
Screening for Tuberculosis Infection among Migrants: A Cost-Effectiveness Analysis in the Italian Context. Antibiotics (Basel, Switzerland)\| PubMed ID: 37106992	2023
Comprehensive Drug Resistance Characterization of Pulmonary Tuberculosis in Algeria: Insights on Strains by Whole-Genome Sequencing. Microbial drug resistance (Larchmont, N.Y.)\| PubMed ID: 37115530	2023
Appeal from the European tuberculosis reference laboratory network (ERLTB-Net) for improving the diagnosis of infections due to nontuberculous mycobacteria. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 37321396	2024
Mind the gap. Rolling out new drug resistant tuberculosis regimens with limited diagnostic tools. Journal of clinical tuberculosis and other mycobacterial diseases\| PubMed ID: 37389011	2023
Update on the diagnosis of tuberculosis. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 37490968	2024
Rolling out new anti-tuberculosis drugs without diagnostic capacity. Breathe (Sheffield, England)\| PubMed ID: 37492347	2023
Outcome of BCG Vaccination in ADA-SCID Patients: A 12-Patient Series. Biomedicines\| PubMed ID: 37509449	2023
The small non-coding RNA B11 regulates multiple facets of Mycobacterium abscessus virulence. PLoS pathogens\| PubMed ID: 37603560	2023
Implementation of targeted next-generation sequencing for the diagnosis of drug-resistant tuberculosis in low-resource settings: a programmatic model, challenges, and initial outcomes. Frontiers in public health\| PubMed ID: 37674674	2023
Resistance patterns and transmission of mono- and polyresistant TB: clinical impact of WGS. JAC-antimicrobial resistance\| PubMed ID: 37799267	2023
Tuberculosis incidence in foreign-born people residing in European countries in 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin\| PubMed ID: 37855907	2023
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex. Nature communications\| PubMed ID: 37980337	2023
Tuberculosis in Ukrainian War Refugees and Migrants in the Czech Republic and Slovakia: A Molecular Epidemiological Study. Journal of epidemiology and global health\| PubMed ID: 38048026	2024
The effect of M. tuberculosis lineage on clinical phenotype. PLOS global public health\| PubMed ID: 38117783	2023
Cultivation and sequencing-free protocol for detection and typing. iScience\| PubMed ID: 38510115	2024
Characteristic SNPs defining the major multidrug-resistant clusters identified by EuSeqMyTB to support routine surveillance, EU/EEA, 2017 to 2019. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin\| PubMed ID: 38516788	2024
Multidrug-resistant tuberculosis. Nature reviews. Disease primers\| PubMed ID: 38523140	2024
Transcriptomic responses to antibiotic exposure in . Antimicrobial agents and chemotherapy\| PubMed ID: 38587412	2024
Genetic barriers more than environmental associations explain Serratia marcescens population structure. Communications biology\| PubMed ID: 38632370	2024
Re: 'Availability of drugs and resistance testing for BPaLM regimen for rifampicin-resistant tuberculosis in Europe' by Lange et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 38851424	2024
The novel drug candidate VOMG kills Mycobacterium abscessus and other pathogens by inhibiting cell division. International journal of antimicrobial agents\| PubMed ID: 39069229	2024
Long-term successfull management of recurrent episodes of nontuberculous mycobacterial infection in an apparently healthy Chinese woman. Annals of clinical microbiology and antimicrobials\| PubMed ID: 39097716	2024
Targeted next-generation sequencing of from patient samples: lessons learned from high drug-resistant burden clinical settings in Bangladesh. Emerging microbes & infections\| PubMed ID: 39136526	2024
Nanopore-based targeted sequencing test for direct tuberculosis identification, genotyping, and detection of drug resistance mutations: a side-by-side comparison of targeted next-generation ... Journal of clinical microbiology\| PubMed ID: 39240079	2024
Infection with extensively drug-resistant harbouring in a gay man in Italy. Sexually transmitted infections\| PubMed ID: 39266219	2025
Evaluating the efficacy of whole genome sequencing in predicting susceptibility profiles for first-line antituberculosis drugs. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 39341416	2025
Whole-genome sequencing-based characterization of Salmonella enterica Serovar Enteritidis and Kentucky isolated from laying hens in northwest of Iran, 2022-2023. Gut pathogens\| PubMed ID: 39819347	2025
Four months daily rifampicin vs. 3 months daily rifampicin/isoniazid for the treatment of tuberculosis infection in asylum seekers: a randomized controlled trial. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases\| PubMed ID: 40032083	2025
Activity of imipenem/relebactam against KPC-producing Klebsiella pneumoniae and the possible role of Ompk36 mutation in determining resistance: an Italian retrospective analysis. Annals of clinical microbiology and antimicrobials\| PubMed ID: 40223126	2025
Comprehensive Whole Genome Sequencing Dataset of Mycobacterium tuberculosis Strains Collected Across Italy. Scientific data\| PubMed ID: 40234438	2025