Robin Mark Warren

Division of Molecular Biology and Human Genetics, Stellenbosch University

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title	2025
Publication title	2025

Other Publications

Article	Year
Emergence and spread of extensively and totally drug-resistant tuberculosis, South Africa. Emerging infectious diseases\| PubMed ID: 23622714	2013
Whole genome sequencing reveals genomic heterogeneity and antibiotic purification in Mycobacterium tuberculosis isolates. BMC genomics\| PubMed ID: 26496891	2015
Whole genome sequence analysis of Mycobacterium suricattae. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 26542221	2015
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages. BMC genomics\| PubMed ID: 26923687	2016
The plasmid-mediated evolution of the mycobacterial ESX (Type VII) secretion systems. BMC evolutionary biology\| PubMed ID: 26979252	2016
Prevalence of pyrazinamide resistance across the spectrum of drug resistant phenotypes of Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 27450014	2016
Implementation of new tools for multidrug-resistant tuberculosis detection and control. International journal of mycobacteriology\| PubMed ID: 28043620	2016
Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 28412523	2017
Exploring the potential of T7 bacteriophage protein Gp2 as a novel inhibitor of mycobacterial RNA polymerase. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 28802409	2017
Genetic diversity and potential routes of transmission of Mycobacterium bovis in Mozambique. PLoS neglected tropical diseases\| PubMed ID: 29346413	2018
Papanicolaou induced fluorescence, Ziehl-Neelsen and Auramine O stains on lymph node fine needle aspiration biopsy specimens from children: A comparative study. Diagnostic cytopathology\| PubMed ID: 29722172	2018
Accuracy of whole genome sequencing versus phenotypic (MGIT) and commercial molecular tests for detection of drug-resistant Mycobacterium tuberculosis isolated from patients in Brazil and Mo... Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 29779775	2018
IP-10: A potential biomarker for detection of Mycobacterium bovis infection in warthogs (Phacochoerus africanus). Veterinary immunology and immunopathology\| PubMed ID: 29914681	2018
Diagnostic Accuracy and Utility of FluoroType MTBDR, a New Molecular Assay for Multidrug-Resistant Tuberculosis. Journal of clinical microbiology\| PubMed ID: 29976588	2018
Parallel testing increases detection of Mycobacterium bovis-infected African buffaloes (Syncerus caffer). Veterinary immunology and immunopathology\| PubMed ID: 30596379	2018
Deciphering Within-Host Microevolution of through Whole-Genome Sequencing: the Phenotypic Impact and Way Forward. Microbiology and molecular biology reviews : MMBR\| PubMed ID: 30918049	2019
Recovery of from positive mycobacterium growth indicator tubes stored at room temperature for up to 6 years in low-income and High-Tuberculosis-Burden Country. International journal of mycobacteriology\| PubMed ID: 31210164	2019
On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics. Frontiers in microbiology\| PubMed ID: 31281302	2019
Parallel measurement of IFN-γ and IP-10 in QuantiFERON®-TB Gold (QFT) plasma improves the detection of Mycobacterium bovis infection in African buffaloes (Syncerus caffer). Preventive veterinary medicine\| PubMed ID: 31311648	2019
Xpert MTB/RIF performance to diagnose tuberculosis and rifampicin resistance in a reference centre in southern Brazil. ERJ open research\| PubMed ID: 31404338	2019
Distinct serum biosignatures are associated with different tuberculosis treatment outcomes. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 31434026	2019
Impact of Mycobacterium bovis-induced pathology on interpretation of QuantiFERON®-TB Gold assay results in African buffaloes (Syncerus caffer). Veterinary immunology and immunopathology\| PubMed ID: 31470250	2019
Detection of Second Line Drug Resistance among Drug Resistant Mycobacterium Tuberculosis Isolates in Botswana. Pathogens (Basel, Switzerland)\| PubMed ID: 31661825	2019
A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic. BMC medicine\| PubMed ID: 32014024	2020
Phylogenomic assessment of drug-resistant Mycobacterium tuberculosis strains from Beira, Mozambique. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 32063558	2020
Tuberculosis research in South Africa over the past 30 years: From bench to bedside. South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde\| PubMed ID: 32252868	2019
Molecular epidemiology of drug resistant Mycobacterium tuberculosis in Africa: a systematic review. BMC infectious diseases\| PubMed ID: 32404119	2020
Genetic Diversity in Clinical Isolates and Resulting Outcomes of Tuberculosis Infection and Disease. Annual review of genetics\| PubMed ID: 32926793	2020
COVID-19 cough classification using machine learning and global smartphone recordings. Computers in biology and medicine\| PubMed ID: 34182331	2021
COVID-19 detection in cough, breath and speech using deep transfer learning and bottleneck features. Computers in biology and medicine\| PubMed ID: 34954610	2022
New insights on tuberculosis transmission dynamics and drug susceptibility profiles among the prison population in Southern Brazil based on whole-genome sequencing. Revista da Sociedade Brasileira de Medicina Tropical\| PubMed ID: 36820651	2023
Comparison of two diagnostic intervention packages for community-based active case finding for tuberculosis: an open-label randomized controlled trial. Nature medicine\| PubMed ID: 36894651	2023
Integrating molecular and radiological screening tools during community-based active case-finding for tuberculosis and COVID-19 in southern Africa. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 38701914	2024
Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry. PloS one\| PubMed ID: 38843147	2024
A Genome-Focused Investigation Reveals the Emergence of a Strain Related to Multidrug-Resistant Tuberculosis in the Amazon Region of Brazil. Microorganisms\| PubMed ID: 39338491	2024
Comprehensive genomic surveillance reveals transmission profiles of extensively drug-resistant tuberculosis cases in Pará, Brazil. Frontiers in microbiology\| PubMed ID: 39911713	2024