Helena M. B. Seth-Smith

Institute of Medical Microbiology, University of Zürich

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 1	2025

Other Publications

Article	Year
Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp. Scientific reports\| PubMed ID: 26639610	2015
The emergence of epitheliocystis in the upper Rhone region: evidence for Chlamydiae in wild and farmed salmonid populations. Archives of microbiology\| PubMed ID: 26802008	2016
Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. The ISME journal\| PubMed ID: 26849311	2016
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nature communications\| PubMed ID: 26912299	2016
Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts. Genome biology and evolution\| PubMed ID: 27190004	2016
Wild type agr-negative livestock-associated MRSA exhibits high adhesive capacity to human and porcine cells. Research in microbiology\| PubMed ID: 27720828	2017
Selective Pressure Promotes Tetracycline Resistance of Chlamydia Suis in Fattening Pigs. PloS one\| PubMed ID: 27893834	2016
A Zebrafish Model for Chlamydia Infection with the Obligate Intracellular Pathogen Waddlia chondrophila. Frontiers in microbiology\| PubMed ID: 27917158	2016
Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria. Environmental microbiology\| PubMed ID: 28205377	2017
The Chlamydia suis Genome Exhibits High Levels of Diversity, Plasticity, and Mobile Antibiotic Resistance: Comparative Genomics of a Recent Livestock Cohort Shows Influence of Treatment Regi... Genome biology and evolution\| PubMed ID: 28338777	2017
Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin. Scientific reports\| PubMed ID: 29618824	2018
Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity. Genome biology and evolution\| PubMed ID: 29726925	2018
Chlamydiae in human intestinal biopsy samples. Pathogens and disease\| PubMed ID: 30445531	2018
Discovery and Characterization of sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs. Frontiers in microbiology\| PubMed ID: 30671031	2018
Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection. BMC infectious diseases\| PubMed ID: 30845966	2019
Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland. Emerging infectious diseases\| PubMed ID: 31107229	2019
Symposium report: One Health meets sequencing. Microbes and infection\| PubMed ID: 31401354	2020
A Novel Lineage of Ceftriaxone-resistant Salmonella Typhi From India That Is Closely Related to XDR S. Typhi Found in Pakistan. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 31872221	2020
Prevalence and phylogeny of Chlamydiae and hemotropic mycoplasma species in captive and free-living bats. BMC microbiology\| PubMed ID: 32590949	2020
NGS-Based Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test. Frontiers in microbiology\| PubMed ID: 33424794	2020
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms\| PubMed ID: 33806013	2021
Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of . Frontiers in cellular and infection microbiology\| PubMed ID: 34141631	2021
Author Correction: Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin. Scientific reports\| PubMed ID: 34497335	2021
Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome medicine\| PubMed ID: 34517886	2021
Colistin resistance in Gram-negative bacteria analysed by five phenotypic assays and inference of the underlying genomic mechanisms. BMC microbiology\| PubMed ID: 34798825	2021
Author Correction: Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin. Scientific reports\| PubMed ID: 36171476	2022
A Case Study of Zoonotic Infection: Diagnostic Challenges From Clinical and Microbiological Perspectives. Open forum infectious diseases\| PubMed ID: 36320194	2022
Diagnostic challenges within the group: finding the beast without teeth. New microbes and new infections\| PubMed ID: 36385748	2022
PorinPredict: Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance. Microbiology spectrum\| PubMed ID: 36715510	2023
Whole-genome-based characterization of from human patients with gastroenteritis collected over an 18 year period reveals increasing prevalence of antimicrobial resistance. Microbial genomics\| PubMed ID: 36809179	2023
A systematic outbreak investigation of SARS-CoV-2 transmission clusters in a tertiary academic care center. Antimicrobial resistance and infection control\| PubMed ID: 37085891	2023
The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial genomics\| PubMed ID: 37171846	2023
Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis. Genome medicine\| PubMed ID: 37904175	2023
Novel Organism Verification and Analysis (NOVA) study: identification of 35 clinical isolates representing potentially novel bacterial taxa using a pipeline based on whole genome sequencing. BMC microbiology\| PubMed ID: 38178003	2024
Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome medicine\| PubMed ID: 38317199	2024
S-Gene Target Failure as an Effective Tool for Tracking the Emergence of Dominant SARS-CoV-2 Variants in Switzerland and Liechtenstein, Including Alpha, Delta, and Omicron BA.1, BA.2, and BA... Microorganisms\| PubMed ID: 38399725	2024
Rapid detection of plasmid-mediated AmpC-producers by eazyplex® SuperBug AmpC assay compared to whole-genome sequencing. Journal of microbiological methods\| PubMed ID: 38642781	2024
Burkholderia cenocepacia ST-250 in cystic fibrosis patients in Switzerland: Genomic investigation of transmission routes. Diagnostic microbiology and infectious disease\| PubMed ID: 39116652	2024
Towards unified reporting of genome sequencing results in clinical microbiology. PeerJ\| PubMed ID: 39131622	2024
Colonization with resistant bacteria in hospital employees: an epidemiological surveillance and typing study. Antimicrobial agents and chemotherapy\| PubMed ID: 39324817	2024
Outbreak with OXA-23-producing Acinetobacter baumannii in a COVID-19 ICU cohort: unraveling routes of transmission. Antimicrobial resistance and infection control\| PubMed ID: 39427188	2024
genomes from rectal samples: description of a new clade comprising -genotype L4 from Argentina. Microbial genomics\| PubMed ID: 39943870	2025
Diagnostic algorithm for the detection of carbapenemases and extended-spectrum β-lactamases in carbapenem-resistant . Microbiology spectrum\| PubMed ID: 40237495	2025
A multilocus sequence typing scheme for the emerging respiratory pathogen Mycoplasma amphoriforme. Letters in applied microbiology\| PubMed ID: 40392675	2025
Genomic analysis of in the drinking water system of a large building over 25 years. Microbial genomics\| PubMed ID: 40408137	2025