Daniel Schindler

Max Planck Institute for Terrestrial Microbiology

Affiliated withMax Planck Institute for Terrestrial Microbiology Center for Molecular Biology of Heidelberg University (ZMBH)Philipps-University Marburg

Research Area

Bioengineering

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2025

Other Publications

Article	Year
Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology. Bioengineering (Basel, Switzerland)\| PubMed ID: 33138080	2020
Compacting a synthetic yeast chromosome arm. Genome biology\| PubMed ID: 33397424	2021
SCRaMbLE: A Study of Its Robustness and Challenges through Enhancement of Hygromycin B Resistance in a Semi-Synthetic Yeast. Bioengineering (Basel, Switzerland)\| PubMed ID: 33806931	2021
An Easy-to-Use Plasmid Toolset for Efficient Generation and Benchmarking of Synthetic Small RNAs in Bacteria. ACS synthetic biology\| PubMed ID: 36044590	2022
Microbes of traditional fermentation processes as synthetic biology chassis to tackle future food challenges. Frontiers in bioengineering and biotechnology\| PubMed ID: 36185425	2022
Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection. Nature ecology & evolution\| PubMed ID: 37012377	2023
DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria. Bioinformatics (Oxford, England)\| PubMed ID: 37086442	2023
Design, construction, and functional characterization of a tRNA neochromosome in yeast. Cell\| PubMed ID: 37944512	2023
Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. Cell genomics\| PubMed ID: 38020968	2023
A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. Microbial cell factories\| PubMed ID: 38104077	2023
DuBA.flow─A Low-Cost, Long-Read Amplicon Sequencing Workflow for the Validation of Synthetic DNA Constructs. ACS synthetic biology\| PubMed ID: 38295293	2024
In Silico Design, In Vitro Construction, and In Vivo Application of Synthetic Small Regulatory RNAs in Bacteria. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 38468105	2024
An Optimized Genotyping Workflow for Identifying Highly SCRaMbLEd Synthetic Yeasts. ACS synthetic biology\| PubMed ID: 38597458	2024
Emergence of fractal geometries in the evolution of a metabolic enzyme. Nature\| PubMed ID: 38600380	2024
Methodological advances enabled by the construction of a synthetic yeast genome. Cell reports methods\| PubMed ID: 38653205	2024
Rationally designed chromosome fusion does not prevent rapid growth of Vibrio natriegens. Communications biology\| PubMed ID: 38698198	2024
A (metaphorical) moment for RNA-based biotechnology? : Current metaphors for RNA limit development of and public communication about RNA-based technologies. EMBO reports\| PubMed ID: 38977892	2024
Frequent transitions in self-assembly across the evolution of a central metabolic enzyme. bioRxiv : the preprint server for biology\| PubMed ID: 39005358	2024
Modular Assembly of Synthetic Secondary Chromosomes. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 39028507	2024
Isofunctional but Structurally Different Methyltransferases for Dithiolopyrrolone Diversification. Angewandte Chemie (International ed. in English)\| PubMed ID: 39185606	2024
Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. PLoS genetics\| PubMed ID: 39231196	2024
A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. iScience\| PubMed ID: 39280619	2024
Use of a Golden Gate Plasmid Set Enabling Scarless MoClo-Compatible Transcription Unit Assembly. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 39363069	2025
Automation and Miniaturization of Golden Gate DNA Assembly Reactions Using Acoustic Dispensers. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 39363071	2025
Validation of Golden Gate Assemblies Using Highly Multiplexed Nanopore Amplicon Sequencing. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 39363072	2025
Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nature communications\| PubMed ID: 39406738	2024
- & : plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly. Synthetic biology (Oxford, England)\| PubMed ID: 39605955	2024
Frequent transitions in self-assembly across the evolution of a central metabolic enzyme. Nature communications\| PubMed ID: 39627196	2024
Specificities of Chemosensory Receptors in the Human Gut Microbiota. bioRxiv : the preprint server for biology\| PubMed ID: 39990360	2025
Harnessing Small RNAs as Synthetic Post-transcriptional Regulators in Bacteria. ACS synthetic biology\| PubMed ID: 40624805	2025
Specificities of chemosensory receptors in the human gut microbiota. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 40857311	2025