Mariusz Nowacki

Institute of Cell Biology, University of Bern

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 1	2025

Other Publications

Article	Year
RNA-mediated epigenetic regulation of DNA copy number. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21078984	2010
RNA-Mediated Epigenetic Programming of Genome Rearrangements. Annual review of genomics and human genetics\| PubMed ID: 21801022	2011
The Oxytricha trifallax mitochondrial genome. Genome biology and evolution\| PubMed ID: 22179582	2012
The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences. PLoS genetics\| PubMed ID: 23071448	2012
Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement. Cell\| PubMed ID: 23217708	2012
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. PLoS biology\| PubMed ID: 23382650	2013
Functional diversification of Dicer-like proteins and small RNAs required for genome sculpting. Developmental cell\| PubMed ID: 24439910	2014
Relationship between genome and epigenome--challenges and requirements for future research. BMC genomics\| PubMed ID: 24942464	2014
The draft assembly of the radically organized Stylonychia lemnae macronuclear genome. Genome biology and evolution\| PubMed ID: 24951568	2014
Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion. Nucleic acids research\| PubMed ID: 25016527	2014
Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination. Nucleic acids research\| PubMed ID: 25270876	2014
Pdsg1 and Pdsg2, novel proteins involved in developmental genome remodelling in Paramecium. PloS one\| PubMed ID: 25397898	2014
The eukaryotic way to defend and edit genomes by sRNA-targeted DNA deletion. Annals of the New York Academy of Sciences\| PubMed ID: 25581723	2015
Chromosome fusions triggered by noncoding RNA. RNA biology\| PubMed ID: 27267579	2017
Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination. Cell\| PubMed ID: 27426948	2016
Necessity Is the Mother of Invention: Ciliates, Transposons, and Transgenerational Inheritance. Trends in genetics : TIG\| PubMed ID: 28174020	2017
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current biology : CB\| PubMed ID: 28190732	2017
Circular Concatemers of Ultra-Short DNA Segments Produce Regulatory RNAs. Cell\| PubMed ID: 28283070	2017
Two Sets of Piwi Proteins Are Involved in Distinct sRNA Pathways Leading to Elimination of Germline-Specific DNA. Cell reports\| PubMed ID: 28700949	2017
RNA-mediated transgenerational inheritance in ciliates and plants. Chromosoma\| PubMed ID: 29230532	2018
Dicer-like Enzymes with Sequence Cleavage Preferences. Cell\| PubMed ID: 29551264	2018
From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond. Chemical reviews\| PubMed ID: 29600857	2018
A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium. Nucleic acids research\| PubMed ID: 30165457	2018
Six domesticated PiggyBac transposases together carry out programmed DNA elimination in . eLife\| PubMed ID: 30223944	2018
Determination of the presence of 5-methylcytosine in Paramecium tetraurelia. PloS one\| PubMed ID: 30379964	2018
Evolutionary origins and impacts of genome architecture in ciliates. Annals of the New York Academy of Sciences\| PubMed ID: 31074010	2019
Roles of Noncoding RNAs in Ciliate Genome Architecture. Journal of molecular biology\| PubMed ID: 31926952	2020
Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature methods\| PubMed ID: 32251396	2020
Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature methods\| PubMed ID: 32296171	2020
Programmed genome rearrangements in ciliates. Cellular and molecular life sciences : CMLS\| PubMed ID: 32462406	2020
Early developmental, meiosis-specific proteins - Spo11, Msh4-1, and Msh5 - Affect subsequent genome reorganization in Paramecium tetraurelia. Biochimica et biophysica acta. Molecular cell research\| PubMed ID: 35181406	2022
Identification of novel, functional, long noncoding RNAs involved in programmed, large-scale genome rearrangements. RNA (New York, N.Y.)\| PubMed ID: 35680167	2022
A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing. Cell reports\| PubMed ID: 36001962	2022
Chromatin remodeling is required for sRNA-guided DNA elimination in Paramecium. The EMBO journal\| PubMed ID: 36221862	2022
Developmental mRNA clearance by PIWI-bound endo-siRNAs in Paramecium. Cell reports\| PubMed ID: 36870062	2023
Structural maintenance of chromosomes (SMC) proteins are required for DNA elimination in . Life science alliance\| PubMed ID: 38056908	2024
Dynamic DNA -adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote . Genome research\| PubMed ID: 38471739	2024
Eukaryotic release factor 1 from Euplotes promotes frameshifting at premature stop codons in human cells. iScience\| PubMed ID: 38510117	2024
ISWI1 complex proteins facilitate developmental genome editing in . Genome research\| PubMed ID: 39542647	2025
Heterochromatin-dependent transcription links the PRC2 complex to small RNA-mediated DNA elimination. EMBO reports\| PubMed ID: 39614125	2025
Functions and mechanisms of eukaryotic RNA-guided programmed DNA elimination. Biochemical Society transactions\| PubMed ID: 40305257	2025