Oliver Rupp

Bioinformatics and Systems Biology, Justus Liebig University

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2025

Other Publications

Article	Year
Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines. PloS one\| PubMed ID: 24427317	2014
The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells. Journal of biotechnology\| PubMed ID: 25701679	2015
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of biotechnology\| PubMed ID: 26150016	2015
De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC genomics\| PubMed ID: 26645667	2015
Next Generation Sequencing Identifies Five Major Classes of Potentially Therapeutic Enzymes Secreted by Lucilia sericata Medical Maggots. BioMed research international\| PubMed ID: 27119084	2016
Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells. Journal of biotechnology\| PubMed ID: 27890772	2017
An Evolutionary Framework for Carpel Developmental Control Genes. Molecular biology and evolution\| PubMed ID: 28049761	2017
Seed Plant-Specific Gene Lineages Involved in Carpel Development. Molecular biology and evolution\| PubMed ID: 28087776	2017
Massive parallel insertion site sequencing of an arrayed Sinorhizobium meliloti signature-tagged mini-Tn 5 transposon mutant library. Journal of biotechnology\| PubMed ID: 28235609	2017
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of biotechnology\| PubMed ID: 28506932	2017
Pathogen recognition in compatible plant-microbe interactions. Scientific reports\| PubMed ID: 28743967	2017
Complete Genome Sequence of the Fruiting Myxobacterium Strain DSM 14697, Generated by PacBio Sequencing. Genome announcements\| PubMed ID: 28983009	2017
Whole-Genome Sequence of the Fruiting Myxobacterium DSM 52655. Genome announcements\| PubMed ID: 29074667	2017
Draft Genome Sequence of the Fruiting Myxobacterium DSM 71. Genome announcements\| PubMed ID: 29074673	2017
Complete Genome Sequence of the Fruiting Myxobacterium DSM 14713. Genome announcements\| PubMed ID: 29122879	2017
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome. Journal of biotechnology\| PubMed ID: 29278726	2018
Induces a Virulence-Dependent microRNA Signature That Regulates the Immune Response in . Frontiers in microbiology\| PubMed ID: 29312175	2017
A reference genome of the Chinese hamster based on a hybrid assembly strategy. Biotechnology and bioengineering\| PubMed ID: 29704459	2018
Genome sequence of the endophytic strain Enterobacter sp. J49, a potential biofertilizer for peanut and maize. Genomics\| PubMed ID: 29857118	2019
Binning enables efficient host genome reconstruction in cnidarian holobionts. GigaScience\| PubMed ID: 29917104	2018
ADAR1 Is Required for Dendritic Cell Subset Homeostasis and Alveolar Macrophage Function. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 30651342	2019
Complete Genome Sequence of the Corallopyronin A-Producing Myxobacterium Corallococcus coralloides B035. Microbiology resource announcements\| PubMed ID: 31023790	2019
Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA. Genes\| PubMed ID: 31035394	2019
Nuclear factor of activated T-cells, NFATC1, governs FLT3-driven hematopoietic stem cell transformation and a poor prognosis in AML. Journal of hematology & oncology\| PubMed ID: 31286998	2019
iCLIP analysis of RNA substrates of the archaeal exosome. BMC genomics\| PubMed ID: 33198623	2020
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia. Scientific reports\| PubMed ID: 33462312	2021
Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense). BMC plant biology\| PubMed ID: 33588756	2021
Genomic analysis of novel Yarrowia-like yeast symbionts associated with the carrion-feeding burying beetle Nicrophorus vespilloides. BMC genomics\| PubMed ID: 33941076	2021
Evolution and development of fruits of Erycina pusilla and other orchid species. PloS one\| PubMed ID: 37815982	2023
MpTGA, together with MpNPR, regulates sexual reproduction and independently affects oil body formation in Marchantia polymorpha. The New phytologist\| PubMed ID: 38095258	2024
Conservation of the dehiscence zone gene regulatory network in dicots and the role of the SEEDSTICK ortholog of California poppy (Eschscholzia californica) in fruit development. EvoDevo\| PubMed ID: 39731146	2024
Differential expression of host invasion-associated genes by Sarcocystis calchasi in intermediate versus definitive hosts. PloS one\| PubMed ID: 40460112	2025
Diversity of Environmental Escherichia coli in Subtropical Freshwater Systems of South Africa. Current microbiology\| PubMed ID: 40719781	2025