Johan Burger

Department of Genetics, Stellenbosch University

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2025

Other Publications

Article	Year
Modified cetyltrimethylammonium bromide method improves robustness and versatility: the benchmark for plant RNA extraction. Biotechnology journal\| PubMed ID: 19016512	2008
Genetic variability within the coat protein gene of Grapevine fanleaf virus isolates from South Africa and the evaluation of RT-PCR, DAS-ELISA and ImmunoStrips as virus diagnostic assays. Virus research\| PubMed ID: 19428739	2009
Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Virology\| PubMed ID: 20172578	2010
The first complete nucleotide sequence of a grapevine virus E variant. Archives of virology\| PubMed ID: 20473697	2010
Mapping of the 5' terminal nucleotides of Grapevine leafroll-associated virus 3 sgRNAs. Virus research\| PubMed ID: 20561952	2010
The grapevine-infecting vitiviruses, with particular reference to grapevine virus A. Archives of virology\| PubMed ID: 21779907	2011
Visualization of plant viral suppressor silencing activity in intact leaf lamina by quantitative fluorescent imaging. Plant methods\| PubMed ID: 21812965	2011
Complete nucleotide sequence of a South African isolate of Grapevine fanleaf virus. Virus genes\| PubMed ID: 22669541	2012
Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI. Virology journal\| PubMed ID: 23016734	2012
Complete genome of a novel endornavirus assembled from next-generation sequence data. Journal of virology\| PubMed ID: 23118465	2012
Grapevine leafroll-associated virus 3. Frontiers in microbiology\| PubMed ID: 23596440	2013
Complete nucleotide sequence of a South African isolate of Grapevine fanleaf virus and its associated satellite RNA. Viruses\| PubMed ID: 23867805	2013
Extending the sRNAome of apple by next-generation sequencing. PloS one\| PubMed ID: 24752316	2014
High-throughput sequencing reveals small RNAs involved in ASGV infection. BMC genomics\| PubMed ID: 24998458	2014
Metagenomic next-generation sequencing of viruses infecting grapevines. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 25981264	2015
Phylogenomic analysis reveals deep divergence and recombination in an economically important grapevine virus. PloS one\| PubMed ID: 25992606	2015
Detection of a divergent variant of grapevine virus F by next-generation sequencing. Archives of virology\| PubMed ID: 26031616	2015
Targeted virus detection in next-generation sequencing data using an automated e-probe based approach. Virology\| PubMed ID: 27209446	2016
Next-generation sequencing for virus detection: covering all the bases. Virology journal\| PubMed ID: 27250973	2016
Differential expression of miRNAs and associated gene targets in grapevine leafroll-associated virus 3-infected plants. Archives of virology\| PubMed ID: 28025711	2017
The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. 'Chardonnay'. PloS one\| PubMed ID: 28813447	2017
In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection. Virology journal\| PubMed ID: 29058618	2017
Genetic diversity and identification of putative recombination events in grapevine rupestris stem pitting-associated virus. Archives of virology\| PubMed ID: 29796924	2018
Characterization of Citrus tristeza virus Single-Variant Sources in Grapefruit in Greenhouse and Field Trials. Plant disease\| PubMed ID: 30682917	2016
Draft Genome Sequence of a " Phytoplasma asteris"-Related Strain (Aster Yellows, Subgroup 16SrI-B) from South Africa. Microbiology resource announcements\| PubMed ID: 31023813	2019
Genomic characterisation of a newly identified badnavirus infecting ivy (Hedera helix). Archives of virology\| PubMed ID: 32314061	2020
Citrus Tristeza Virus Isolates of the Same Genotype Differ in Stem Pitting Severity in Grapefruit. Plant disease\| PubMed ID: 32689882	2020
Grapefruit Field Trial Evaluation of Citrus Tristeza Virus T68-Strain Sources. Plant disease\| PubMed ID: 32748720	2021
Genome-Informed Design of a LAMP Assay for the Specific Detection of the Strain of ' Phytoplasma asteris' Phytoplasma Occurring in Grapevines in South Africa. Plant disease\| PubMed ID: 35380469	2022
CRISPR/Cas-based tools for the targeted control of plant viruses. Molecular plant pathology\| PubMed ID: 35920132	2022
Identification of Interactions between Proteins Encoded by Grapevine Leafroll-Associated Virus 3. Viruses\| PubMed ID: 36680248	2023
Diversity of viroids infecting grapevines in the South African Vitis germplasm collection. Virus genes\| PubMed ID: 36745286	2023
Investigating Protein-Protein Interactions Between Grapevine Leafroll-Associated Virus 3 and . Phytopathology\| PubMed ID: 37311734	2023
CRISPR-based resistance to grapevine virus A. Frontiers in plant science\| PubMed ID: 38111883	2023
Making genome editing a success story in Africa. Nature biotechnology\| PubMed ID: 38504013	2024
A combined recombinase polymerase amplification CRISPR/Cas12a assay for detection of Fusarium oxysporum f. sp. cubense tropical race 4. Scientific reports\| PubMed ID: 39828694	2025