Vadim Backman

Department of Biomedical Engineering, Northwestern University

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title	2026
Publication title	2026

Other Publications

Article	Year
Coherent backscattering spectroscopy. Optics letters\| PubMed ID: 15357355	2004
Equiphase-sphere approximation for analysis of light scattering by arbitrarily shaped nonspherical particles. Applied optics\| PubMed ID: 15376425	2004
Equiphase-sphere approximation for light scattering by stochastically inhomogeneous microparticles. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 15600782	2004
Exact solution of Maxwell's equations for optical interactions with a macroscopic random medium: addendum. Optics letters\| PubMed ID: 15648636	2005
Low-coherent backscattering spectroscopy for tissue characterization. Applied optics\| PubMed ID: 15717826	2005
Depth-resolved low-coherence enhanced backscattering. Optics letters\| PubMed ID: 15832924	2005
Development of a bioengineered tissue model and its application in the investigation of the depth selectivity of polarization gating. Applied optics\| PubMed ID: 15861834	2005
Quantitative analysis of depolarization of backscattered light by stochastically inhomogeneous dielectric particles. Optics letters\| PubMed ID: 15865393	2005
Optimal design of structured nanospheres for ultrasharp light-scattering resonances as molecular imaging multilabels. Journal of biomedical optics\| PubMed ID: 15910079	2005
Spectral markers in preneoplastic intestinal mucosa: an accurate predictor of tumor risk in the MIN mouse. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology\| PubMed ID: 16030095	2005
Elastic backscattering spectroscopic microscopy. Optics letters\| PubMed ID: 16196347	2005
Assessment of blood supply in superficial tissue by polarization-gated elastic light-scattering spectroscopy. Applied optics\| PubMed ID: 16422163	2006
Superenhanced backscattering of light by nanoparticles. Optics letters\| PubMed ID: 16441028	2006
Risk stratification of colon carcinogenesis through enhanced backscattering spectroscopy analysis of the uninvolved colonic mucosa. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 16467111	2006
Highly efficient optical coupling and transport phenomena in chains of dielectric microspheres. Optics letters\| PubMed ID: 16480218	2006
Backscattering enhancement of light by nanoparticles positioned in localized optical intensity peaks. Applied optics\| PubMed ID: 16485673	2006
Origin of low-coherence enhanced backscattering. Optics letters\| PubMed ID: 16642138	2006
Spectroscopic translation of cell-material interactions. Biomaterials\| PubMed ID: 16884769	2007
Modeling low-coherence enhanced backscattering using Monte Carlo simulation. Applied optics\| PubMed ID: 16892135	2006
Circular polarization memory effect in low-coherence enhanced backscattering of light. Optics letters\| PubMed ID: 16936878	2006
Low-coherence enhanced backscattering: review of principles and applications for colon cancer screening. Journal of biomedical optics\| PubMed ID: 16965153	2006
Coherent backscattering spectroscopy: a new technique for tissue diagnosis. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference\| PubMed ID: 17271533	2004
Anomalous oscillations in the spectra of light backscattered by inhomogeneous microparticles. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 17500837	2007
Penetration depth of low-coherence enhanced backscattered light in subdiffusion regime. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 17500928	2007
A biodegradable vascularizing membrane: a feasibility study. Acta biomaterialia\| PubMed ID: 17507300	2007
Inducible nitric oxide synthase (iNOS) mediates the early increase of blood supply (EIBS) in colon carcinogenesis. FEBS letters\| PubMed ID: 17658518	2007
Optical markers in duodenal mucosa predict the presence of pancreatic cancer. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 17671121	2007
Photonic nanojet-enabled optical data storage. Optics express\| PubMed ID: 18772983	2008
Measuring mucosal blood supply in vivo with a polarization-gating probe. Applied optics\| PubMed ID: 19002229	2008
Optical methodology for detecting histologically unapparent nanoscale consequences of genetic alterations in biological cells. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19073935	2008
Investigating population risk factors of pancreatic cancer by evaluation of optical markers in the duodenal mucosa. Disease markers\| PubMed ID: 19208949	2008
Quasi one-dimensional light beam generated by a graded-index microsphere. Optics express\| PubMed ID: 19259213	2009
Partial-wave microscopic spectroscopy detects subwavelength refractive index fluctuations: an application to cancer diagnosis. Optics letters\| PubMed ID: 19373360	2009
Rectal mucosal microvascular blood supply increase is associated with colonic neoplasia. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 19383816	2009
Association between rectal optical signatures and colonic neoplasia: potential applications for screening. Cancer research\| PubMed ID: 19417131	2009
Nonscalar elastic light scattering from continuous random media in the Born approximation. Optics letters\| PubMed ID: 19529738	2009
Nanoscale cellular changes in field carcinogenesis detected by partial wave spectroscopy. Cancer research\| PubMed ID: 19549915	2009
Generation of an incident focused light pulse in FDTD. Optics express\| PubMed ID: 19582013	2008
Accuracy of the Born approximation in calculating the scattering coefficient of biological continuous random media. Optics letters\| PubMed ID: 19724530	2009
ADE-FDTD Scattered-Field Formulation for Dispersive Materials. IEEE microwave and wireless components letters : a publication of the IEEE Microwave Theory and Techniques Society\| PubMed ID: 19844602	2008
Photonic Nanojets. Journal of computational and theoretical nanoscience\| PubMed ID: 19946614	2009
Detecting alterations in cell ultrastructure with optical imaging. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference\| PubMed ID: 19964153	2009
Optical measurement of rectal microvasculature as an adjunct to flexible sigmoidosocopy: gender-specific implications. Cancer prevention research (Philadelphia, Pa.)\| PubMed ID: 20570881	2010
Role of cytoskeleton in controlling the disorder strength of cellular nanoscale architecture. Biophysical journal\| PubMed ID: 20682278	2010
Optical detection of buccal epithelial nanoarchitectural alterations in patients harboring lung cancer: implications for screening. Cancer research\| PubMed ID: 20924114	2010
Characterization of light transport in scattering media at sub-diffusion length scales with Low-coherence Enhanced Backscattering. IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society\| PubMed ID: 21037980	2010
Light-scattering technologies for field carcinogenesis detection: a modality for endoscopic prescreening. Gastroenterology\| PubMed ID: 21078318	2011
The influence of chromosome density variations on the increase in nuclear disorder strength in carcinogenesis. Physical biology\| PubMed ID: 21301058	2011
Quantification of nanoscale density fluctuations by electron microscopy: probing cellular alterations in early carcinogenesis. Physical biology\| PubMed ID: 21441647	2011
Neo-angiogenesis and the premalignant micro-circulatory augmentation of early colon carcinogenesis. Cancer letters\| PubMed ID: 21493000	2011
Experimental confirmation at visible light wavelengths of the backscattering enhancement phenomenon of the photonic nanojet. Optics express\| PubMed ID: 21503021	2011
Numerical simulation of partially coherent broadband optical imaging using the finite-difference time-domain method. Optics letters\| PubMed ID: 21540939	2011
Crowding-induced structural alterations of random-loop chromosome model. Physical review letters\| PubMed ID: 21599416	2011
Alternate formulation of enhanced backscattering as phase conjugation and diffraction: derivation and experimental observation. Optics express\| PubMed ID: 21716426	2011
Measurement of optical scattering properties with low-coherence enhanced backscattering spectroscopy. Journal of biomedical optics\| PubMed ID: 21721828	2011
Multiple scattering model for the penetration depth of low-coherence enhanced backscattering. Journal of biomedical optics\| PubMed ID: 21950941	2011
Measurement of the spatial backscattering impulse-response at short length scales with polarized enhanced backscattering. Optics letters\| PubMed ID: 22179867	2011
Near-field penetrating optical microscopy: a live cell nanoscale refractive index measurement technique for quantification of internal macromolecular density. Optics letters\| PubMed ID: 22344088	2012
Nanocytology of rectal colonocytes to assess risk of colon cancer based on field cancerization. Cancer research\| PubMed ID: 22491589	2012
In vivo measurement of the shape of the tissue-refractive-index correlation function and its application to detection of colorectal field carcinogenesis. Journal of biomedical optics\| PubMed ID: 22559696	2012
Monte Carlo model of the penetration depth for polarization gating spectroscopy: influence of illumination-collection geometry and sample optical properties. Applied optics\| PubMed ID: 22781238	2012
Structured interference optical coherence tomography. Optics letters\| PubMed ID: 22859081	2012
A fiber optic probe design to measure depth-limited optical properties in-vivo with low-coherence enhanced backscattering (LEBS) spectroscopy. Optics express\| PubMed ID: 23037017	2012
Dysregulation of microRNAs in colonic field carcinogenesis: implications for screening. PloS one\| PubMed ID: 23049818	2012
Imaging a full set of optical scattering properties of biological tissue by inverse spectroscopic optical coherence tomography. Optics letters\| PubMed ID: 23114323	2012
Open source software for electric field Monte Carlo simulation of coherent backscattering in biological media containing birefringence. Journal of biomedical optics\| PubMed ID: 23123973	2012
Analytical light reflectance models for overlapping illumination and collection area geometries. Applied optics\| PubMed ID: 23207312	2012
Structural length-scale sensitivities of reflectance measurements in continuous random media under the Born approximation. Optics letters\| PubMed ID: 23258058	2012
Computation of tightly-focused laser beams in the FDTD method. Optics express\| PubMed ID: 23388899	2013
Biological mechanisms underlying structural changes induced by colorectal field carcinogenesis measured with low-coherence enhanced backscattering (LEBS) spectroscopy. PloS one\| PubMed ID: 23431406	2013
Insights into the field carcinogenesis of ovarian cancer based on the nanocytology of endocervical and endometrial epithelial cells. International journal of cancer\| PubMed ID: 23436651	2013
Algorithm for automated selection of application-specific fiber-optic reflectance probes. Journal of biomedical optics\| PubMed ID: 23455876	2013
Advances in biophotonics detection of field carcinogenesis for colon cancer risk stratification. Journal of Cancer\| PubMed ID: 23459690	2013
Can OCT be sensitive to nanoscale structural alterations in biological tissue? Optics express\| PubMed ID: 23571994	2013
A physical sciences network characterization of non-tumorigenic and metastatic cells. Scientific reports\| PubMed ID: 23618955	2013
Modulation of light-enhancement to symbiotic algae by light-scattering in corals and evolutionary trends in bleaching. PloS one\| PubMed ID: 23630594	2013
Visible-light optical coherence tomography for retinal oximetry. Optics letters\| PubMed ID: 23722747	2013
HDAC up-regulation in early colon field carcinogenesis is involved in cell tumorigenicity through regulation of chromatin structure. PloS one\| PubMed ID: 23724067	2013
Ultrastructural alterations in field carcinogenesis measured by enhanced backscattering spectroscopy. Journal of biomedical optics\| PubMed ID: 24008865	2013
Method of detecting tissue contact for fiber-optic probes to automate data acquisition without hardware modification. Biomedical optics express\| PubMed ID: 24010002	2013
Polarized Enhanced Backscattering Spectroscopy for Characterization of Biological Tissues at Subdiffusion Length-scales. IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society\| PubMed ID: 24163574	2012
High-speed spectral nanocytology for early cancer screening. Journal of biomedical optics\| PubMed ID: 24193949	2013
Network signatures of nuclear and cytoplasmic density alterations in a model of pre and postmetastatic colorectal cancer. Journal of biomedical optics\| PubMed ID: 24441943	2014
End-binding protein 1 (EB1) up-regulation is an early event in colorectal carcinogenesis. FEBS letters\| PubMed ID: 24492008	2014
Nanoscale changes in chromatin organization represent the initial steps of tumorigenesis: a transmission electron microscopy study. BMC cancer\| PubMed ID: 24629088	2014
Spatially resolved optical and ultrastructural properties of colorectal and pancreatic field carcinogenesis observed by inverse spectroscopic optical coherence tomography. Journal of biomedical optics\| PubMed ID: 24643530	2014
Macromolecular crowding as a regulator of gene transcription. Biophysical journal\| PubMed ID: 24739179	2014
Polarization gating spectroscopy of normal-appearing duodenal mucosa to detect pancreatic cancer. Gastrointestinal endoscopy\| PubMed ID: 24861243	2014
Buccal microRNA dysregulation in lung field carcinogenesis: gender-specific implications. International journal of oncology\| PubMed ID: 24919547	2014
Colonic mucosal fatty acid synthase as an early biomarker for colorectal neoplasia: modulation by obesity and gender. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology\| PubMed ID: 25155760	2014
Buccal spectral markers for lung cancer risk stratification. PloS one\| PubMed ID: 25299667	2014
In vivo functional microangiography by visible-light optical coherence tomography. Biomedical optics express\| PubMed ID: 25360376	2014
Introduction to the BIOMED 2014 feature issue. Biomedical optics express\| PubMed ID: 25574427	2014
Modeling Light Scattering in Tissue as Continuous Random Media Using a Versatile Refractive Index Correlation Function. IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society\| PubMed ID: 25587211	2013
Nanocytological field carcinogenesis detection to mitigate overdiagnosis of prostate cancer: a proof of concept study. PloS one\| PubMed ID: 25706755	2015
In vivo risk analysis of pancreatic cancer through optical characterization of duodenal mucosa. Pancreas\| PubMed ID: 25906443	2015
Super-resolution two-photon microscopy via scanning patterned illumination. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 25974523	2015
Rectal Optical Markers for In Vivo Risk Stratification of Premalignant Colorectal Lesions. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 25991816	2015
In vivo capture and label-free detection of early metastatic cells. Nature communications\| PubMed ID: 26348915	2015
Harnessing novel modalities: field carcinogenesis detection for personalizing prostate cancer management. Future oncology (London, England)\| PubMed ID: 26374598	2015
Clinical Trial Laboratory Data Nested With in Subject: Components of Variance, Sample Size and Cost. Biometrics & biostatistics international journal\| PubMed ID: 26457336	2015
Spectral biomarkers for chemoprevention of colonic neoplasia: a placebo-controlled double-blinded trial with aspirin. Gut\| PubMed ID: 26503631	2017
Fractal Characterization of Chromatin Decompaction in Live Cells. Biophysical journal\| PubMed ID: 26636933	2015
Visible light optical coherence tomography measures retinal oxygen metabolic response to systemic oxygenation. Light, science & applications\| PubMed ID: 26658555	2015
Reconstruction of explicit structural properties at the nanoscale via spectroscopic microscopy. Journal of biomedical optics\| PubMed ID: 26886803	2016
Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology. BioMed research international\| PubMed ID: 26904682	2016
Skeletal light-scattering accelerates bleaching response in reef-building corals. BMC ecology\| PubMed ID: 26996922	2016
Coral bleaching response index: a new tool to standardize and compare susceptibility to thermal bleaching. Global change biology\| PubMed ID: 27074334	2016
Colocalization of cellular nanostructure using confocal fluorescence and partial wave spectroscopy. Journal of biophotonics\| PubMed ID: 27111884	2017
Single realization stochastic FDTD for weak scattering waves in biological random media. IEEE transactions on antennas and propagation\| PubMed ID: 27158153	2013
Nanoscale refractive index fluctuations detected via sparse spectral microscopy. Biomedical optics express\| PubMed ID: 27231596	2016
Finite-difference time-domain-based optical microscopy simulation of dispersive media facilitates the development of optical imaging techniques. Journal of biomedical optics\| PubMed ID: 27283256	2016
Subsurface Super-resolution Imaging of Unstained Polymer Nanostructures. Scientific reports\| PubMed ID: 27354178	2016
Super-resolution spectroscopic microscopy via photon localization. Nature communications\| PubMed ID: 27452975	2016
Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 27535934	2016
Higher Order Chromatin Modulator Cohesin SA1 Is an Early Biomarker for Colon Carcinogenesis: Race-Specific Implications. Cancer prevention research (Philadelphia, Pa.)\| PubMed ID: 27549371	2016
The Greater Genomic Landscape: The Heterogeneous Evolution of Cancer. Cancer research\| PubMed ID: 27550448	2016
Detection of extracellular matrix modification in cancer models with inverse spectroscopic optical coherence tomography. Physics in medicine and biology\| PubMed ID: 27618507	2016
Enhanced Survival with Implantable Scaffolds That Capture Metastatic Breast Cancer Cells In Vivo. Cancer research\| PubMed ID: 27635043	2016
Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 27702891	2016
Optical Detection of Early Damage in Retinal Ganglion Cells in a Mouse Model of Partial Optic Nerve Crush Injury. Investigative ophthalmology & visual science\| PubMed ID: 27784071	2016
Using electron microscopy to calculate optical properties of biological samples. Biomedical optics express\| PubMed ID: 27896013	2016
ASPirin Intervention for the REDuction of colorectal cancer risk (ASPIRED): a study protocol for a randomized controlled trial. Trials\| PubMed ID: 28143522	2017
Theoretical model for optical oximetry at the capillary level: exploring hemoglobin oxygen saturation through backscattering of single red blood cells. Journal of biomedical optics\| PubMed ID: 28157244	2017
Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials. Journal of biomedical optics\| PubMed ID: 28290596	2017
Measuring the Autocorrelation Function of Nanoscale Three-Dimensional Density Distribution in Individual Cells Using Scanning Transmission Electron Microscopy, Atomic Force Microscopy, and a... Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada\| PubMed ID: 28416035	2017
Metabolic reprogramming of the premalignant colonic mucosa is an early event in carcinogenesis. Oncotarget\| PubMed ID: 28423551	2017
The effects of chemical fixation on the cellular nanostructure. Experimental cell research\| PubMed ID: 28673821	2017
The transformation of the nuclear nanoarchitecture in human field carcinogenesis. Future science OA\| PubMed ID: 28884003	2017
Bleaching response of coral species in the context of assemblage response. Coral reefs (Online)\| PubMed ID: 29129968	2017
Chromatin histone modifications and rigidity affect nuclear morphology independent of lamins. Molecular biology of the cell\| PubMed ID: 29142071	2018
Enhancing the sensitivity of mesoscopic light reflection statistics in weakly disordered media by interface reflections. International journal of modern physics. B\| PubMed ID: 29307948	2016
Macrogenomic engineering via modulation of the scaling of chromatin packing density. Nature biomedical engineering\| PubMed ID: 29450107	2017
Single Nucleotide Polymorphism Facilitated Down-Regulation of the Cohesin Stromal Antigen-1: Implications for Colorectal Cancer Racial Disparities. Neoplasia (New York, N.Y.)\| PubMed ID: 29471289	2018
Measuring Nanoscale Chromatin Heterogeneity with Partial Wave Spectroscopic Microscopy. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 29476478	2018
Correlating colorectal cancer risk with field carcinogenesis progression using partial wave spectroscopic microscopy. Cancer medicine\| PubMed ID: 29573208	2018
Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study. PloS one\| PubMed ID: 29771950	2018
Early increase in blood supply (EIBS) is associated with tumor risk in the Azoxymethane model of colon cancer. BMC cancer\| PubMed ID: 30103733	2018
Label free localization of nanoparticles in live cancer cells using spectroscopic microscopy. Nanoscale\| PubMed ID: 30298892	2018
Spectral contrast optical coherence tomography angiography enables single-scan vessel imaging. Light, science & applications\| PubMed ID: 30651982	2019
Quantitative quality-control metrics for oximetry in small vessels by visible light optical coherence tomography angiography. Biomedical optics express\| PubMed ID: 30800493	2019
Single capillary oximetry and tissue ultrastructural sensing by dual-band dual-scan inverse spectroscopic optical coherence tomography. Light, science & applications\| PubMed ID: 30839641	2018
Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm. Nature communications\| PubMed ID: 30971691	2019
Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation. Molecular biology of the cell\| PubMed ID: 31216230	2019
Preservation of cellular nano-architecture by the process of chemical fixation for nanopathology. PloS one\| PubMed ID: 31329606	2019
Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation. Molecular biology of the cell\| PubMed ID: 31365328	2019
Measuring light scattering and absorption in corals with Inverse Spectroscopic Optical Coherence Tomography (ISOCT): a new tool for non-invasive monitoring. Scientific reports\| PubMed ID: 31578438	2019
Author Correction: Measuring light scattering and absorption in corals with Inverse Spectroscopic Optical Coherence Tomography (ISOCT): a new tool for non-invasive monitoring. Scientific reports\| PubMed ID: 31772266	2019
Dynamic Crowding Regulates Transcription. Biophysical journal\| PubMed ID: 31818468	2020
Disordered chromatin packing regulates phenotypic plasticity. Science advances\| PubMed ID: 31934628	2020
Physical and data structure of 3D genome. Science advances\| PubMed ID: 31950084	2020
Uncovering the role of Symbiodiniaceae assemblage composition and abundance in coral bleaching response by minimizing sampling and evolutionary biases. BMC microbiology\| PubMed ID: 32429833	2020
Evidence for possible association of vitamin D status with cytokine storm and unregulated inflammation in COVID-19 patients. Aging clinical and experimental research\| PubMed ID: 32876941	2020
Quantification of gastric mucosal microcirculation as a surrogate marker of portal hypertension by spatially resolved subdiffuse reflectance spectroscopy in diagnosis of cirrhosis: a proof-o... Gastrointestinal endoscopy\| PubMed ID: 33385462	2021
Nanoscale chromatin imaging and analysis platform bridges 4D chromatin organization with molecular function. Science advances\| PubMed ID: 33523864	2021
A Phylogeny-Informed Analysis of the Global Coral-Symbiodiniaceae Interaction Network Reveals that Traits Correlated with Thermal Bleaching Are Specific to Symbiont Transmission Mode. mSystems\| PubMed ID: 33947806	2021
Early Upper Aerodigestive Tract Cancer Detection Using Electron Microscopy to Reveal Chromatin Packing Alterations in Buccal Mucosa Cells. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada\| PubMed ID: 34108070	2021
Spike-in normalization for single-cell RNA-seq reveals dynamic global transcriptional activity mediating anticancer drug response. NAR genomics and bioinformatics\| PubMed ID: 34159316	2021
Origins of subdiffractional contrast in optical coherence tomography. Biomedical optics express\| PubMed ID: 34221684	2021
Lipid exposure activates gene expression changes associated with estrogen receptor negative breast cancer. NPJ breast cancer\| PubMed ID: 35508495	2022
Analysis of three-dimensional chromatin packing domains by chromatin scanning transmission electron microscopy (ChromSTEM). Scientific reports\| PubMed ID: 35842472	2022
Author Correction: Analysis of three-dimensional chromatin packing domains by chromatin scanning transmission electron microscopy (ChromSTEM). Scientific reports\| PubMed ID: 35882912	2022
Chromatin as self-returning walks: From population to single cell and back. Biophysical reports\| PubMed ID: 36425085	2022
Author Correction: Lipid exposure activates gene expression changes associated with estrogen receptor negative breast cancer. NPJ breast cancer\| PubMed ID: 36914690	2023
Chromatin reprogramming and bone regeneration in vitro and in vivo via the microtopography-induced constriction of cell nuclei. Nature biomedical engineering\| PubMed ID: 37308586	2023
Denoising Autoencoder Trained on Simulation-Derived Structures for Noise Reduction in Chromatin Scanning Transmission Electron Microscopy. ACS central science\| PubMed ID: 37396862	2023
Correction: Label free localization of nanoparticles in live cancer cells using spectroscopic microscopy. Nanoscale\| PubMed ID: 37435809	2023
Early detection of lung cancer using artificial intelligence-enhanced optical nanosensing of chromatin alterations in field carcinogenesis. Scientific reports\| PubMed ID: 37608214	2023
Local Volume Concentration, Packing Domains and Scaling Properties of Chromatin. Research square\| PubMed ID: 37886531	2023
Early screening of colorectal cancer using feature engineering with artificial intelligence-enhanced analysis of nanoscale chromatin modifications. medRxiv : the preprint server for health sciences\| PubMed ID: 37961299	2023
Early screening of colorectal cancer using feature engineering with artificial intelligence-enhanced analysis of nanoscale chromatin modifications. Research square\| PubMed ID: 37961494	2023
Differentiation-dependent chromosomal organization changes in normal myogenic cells are absent in rhabdomyosarcoma cells. Frontiers in cell and developmental biology\| PubMed ID: 38020905	2023
Correction: Evidence for possible association of vitamin D status with cytokine storm and unregulated inflammation in COVID-19 patients. Aging clinical and experimental research\| PubMed ID: 38064110	2023
DNA density is a better indicator of a nuclear bleb than lamin B loss. bioRxiv : the preprint server for biology\| PubMed ID: 38370828	2024
KRAS silencing alters chromatin physical organization and transcriptional activity in colorectal cancer cells. Research square\| PubMed ID: 38410476	2024
Histone H3.1 is a chromatin-embedded redox sensor triggered by tumor cells developing adaptive phenotypic plasticity and multidrug resistance. Cell reports\| PubMed ID: 38493478	2024
Local Volume Concentration, Packing Domains and Scaling Properties of Chromatin. ArXiv\| PubMed ID: 38495560	2024
Depletion of lamins B1 and B2 promotes chromatin mobility and induces differential gene expression by a mesoscale-motion-dependent mechanism. Genome biology\| PubMed ID: 38519987	2024
Early screening of colorectal cancer using feature engineering with artificial intelligence-enhanced analysis of nanoscale chromatin modifications. Scientific reports\| PubMed ID: 38565871	2024
Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization. Nature communications\| PubMed ID: 38773126	2024
Deep learning-based spectroscopic single-molecule localization microscopy. Journal of biomedical optics\| PubMed ID: 38799979	2024
Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure. PloS one\| PubMed ID: 38805476	2024
Histone oxidation as a new mechanism of metabolic control over gene expression. Trends in genetics : TIG\| PubMed ID: 38910033	2024
Deep Learning-driven Automatic Nuclei Segmentation of Label-free Live Cell Chromatin-sensitive Partial Wave Spectroscopic Microscopy Imaging. bioRxiv : the preprint server for biology\| PubMed ID: 39229026	2024
Local volume concentration, packing domains, and scaling properties of chromatin. eLife\| PubMed ID: 39331520	2024
Decreased DNA density is a better indicator of a nuclear bleb than lamin B loss. Journal of cell science\| PubMed ID: 39501901	2025
Necrotizing Enterocolitis Detection in Premature Infants Using Broadband Optical Spectroscopy. Journal of biophotonics\| PubMed ID: 39527955	2025
Leveraging chromatin packing domains to target chemoevasion . bioRxiv : the preprint server for biology\| PubMed ID: 39605341	2024
The Impact of Charge Regulation and Ionic Intranuclear Environment on the Nucleosome Core Particle. bioRxiv : the preprint server for biology\| PubMed ID: 39605663	2024
Transcorneal electrical stimulation restores DNA methylation changes in retinal degeneration. Frontiers in molecular neuroscience\| PubMed ID: 39703720	2024
The impact of charge regulation and ionic intranuclear environment on the nucleosome core particle. The Journal of chemical physics\| PubMed ID: 39704570	2024
Chromatin conformation, gene transcription, and nucleosome remodeling as an emergent system. Science advances\| PubMed ID: 39792661	2025
Mature chromatin packing domains persist after RAD21 depletion in 3D. Science advances\| PubMed ID: 39854464	2025
Micropillar-induced changes in cell nucleus morphology enhance bone regeneration by modulating the secretome. Research square\| PubMed ID: 39866882	2025
Nuclear blebs are associated with destabilized chromatin-packing domains. Journal of cell science\| PubMed ID: 39878045	2025
Chromatin Organization Governs Transcriptional Response and Plasticity of Cancer Stem Cells. Advanced science (Weinheim, Baden-Wurttemberg, Germany)\| PubMed ID: 40051293	2025
Three-color single-molecule localization microscopy in chromatin. Light, science & applications\| PubMed ID: 40091134	2025
Differential unfolded protein response regulation in KRAS silencing sensitive and innately resistant colorectal cancer cells. Scientific reports\| PubMed ID: 40274922	2025
Geometrically encoded positioning of introns, intergenic segments, and exons in the human genome. bioRxiv : the preprint server for biology\| PubMed ID: 40501616	2025
Microtopography-induced changes in cell nucleus morphology enhance bone regeneration by modulating the cellular secretome. Nature communications\| PubMed ID: 40645935	2025
Leveraging chromatin packing domains to target chemoevasion in vivo. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 40694328	2025
Multiplexed Chromatin Analysis Using Optical Spectroscopic Statistical Nanosensing. ACS photonics\| PubMed ID: 40718523	2025
Parallel Three-Dimensional Tracking of Quantum Rods Using Polarization-Sensitive Spectroscopic Photon Localization Microscopy. ACS photonics\| PubMed ID: 41103359	2017
Geometrically Encoded Positioning of Introns, Intergenic Segments, and Exons in the Human Genome. Advanced science (Weinheim, Baden-Wurttemberg, Germany)\| PubMed ID: 41144753	2026
First-in-human pilot study of broadband optical spectroscopy (BOS) as noninvasive surveillance for necrotizing enterocolitis (NEC). Journal of pediatric surgery\| PubMed ID: 41643767	2026
Chromatin architecture and physical constriction cooperate in phenotype switching and cancer cell dissemination. bioRxiv : the preprint server for biology\| PubMed ID: 41676741	2026