Joanne B. Emerson

Department of Plant Pathology, University of California, Davis

Affiliated withUniversity of California, Davis

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2026

Other Publications

Article	Year
Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems. Microbiome\| PubMed ID: 28810907	2017
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface. Nature microbiology\| PubMed ID: 29379208	2018
Host-linked soil viral ecology along a permafrost thaw gradient. Nature microbiology\| PubMed ID: 30013236	2018
Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature biotechnology\| PubMed ID: 30556814	2019
Soil Viruses: A New Hope. mSystems\| PubMed ID: 31138723	2019
Multiplex quantitative PCR for single-reaction genetically modified (GM) plant detection and identification of false-positive GM plants linked to Cauliflower mosaic virus (CaMV) infection. BMC biotechnology\| PubMed ID: 31699075	2019
Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities. The ISME journal\| PubMed ID: 33612831	2021
Solutions in microbiome engineering: prioritizing barriers to organism establishment. The ISME journal\| PubMed ID: 34420034	2022
DNase Treatment Improves Viral Enrichment in Agricultural Soil Viromes. mSystems\| PubMed ID: 34491084	2021
Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes. Nature communications\| PubMed ID: 34611153	2021
Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. Microbiome\| PubMed ID: 34836550	2021
Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. Microbiome\| PubMed ID: 34911559	2021
Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. Microbiome\| PubMed ID: 35078529	2022
Diversity in the soil virosphere: to infinity and beyond? Trends in microbiology\| PubMed ID: 35644779	2022
Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 36322723	2022
Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography. The ISME journal\| PubMed ID: 37735616	2023
Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils. Nature ecology & evolution\| PubMed ID: 37770548	2023
Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition. ISME communications\| PubMed ID: 37938672	2022
Substantial differences in soil viral community composition within and among four Northern California habitats. ISME communications\| PubMed ID: 37938790	2022
Microbiome data management in action workshop: Atlanta, GA, USA, June 12-13, 2024. Environmental microbiome\| PubMed ID: 40253432	2025
Patchy burn severity explains heterogeneous soil viral and prokaryotic responses to fire in a mixed conifer forest. mSystems\| PubMed ID: 40366158	2025
Soil viral communities shifted significantly after wildfire in chaparral and woodland habitats. ISME communications\| PubMed ID: 40385308	2025
A call for caution in the biological interpretation of viral auxiliary metabolic genes. Nature microbiology\| PubMed ID: 40866482	2025
DNA extraction and virome processing methods strongly influence recovered human gut viral community characteristics. bioRxiv : the preprint server for biology\| PubMed ID: 41394752	2025