Colleen J. Doherty

Department of Molecular and Structural Biochemistry, North Carolina State University

Affiliated withNorth Carolina State University

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2026

Other Publications

Article	Year
A genome-scale resource for the functional characterization of Arabidopsis transcription factors. Cell reports\| PubMed ID: 25043187	2014
Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 26261339	2015
The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant physiology\| PubMed ID: 29208732	2017
Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes. Scientific reports\| PubMed ID: 29222512	2017
Neural Net Classification Combined With Movement Analysis to Evaluate as a Model System for Time of Day of Anther Appearance. Frontiers in plant science\| PubMed ID: 30429868	2018
Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome. RNA (New York, N.Y.)\| PubMed ID: 30872414	2019
New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum. Journal of experimental botany\| PubMed ID: 30949711	2019
Novel transcriptional responses to heat revealed by turning up the heat at night. Plant molecular biology\| PubMed ID: 31062216	2019
Directions for research and training in plant omics: Big Questions and Big Data. Plant direct\| PubMed ID: 31245771	2019
A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber. Scientific reports\| PubMed ID: 33037299	2020
Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice. Scientific reports\| PubMed ID: 33762605	2021
Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions. Plant direct\| PubMed ID: 33778364	2021
Warm nights disrupt transcriptome rhythms in field-grown rice panicles. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 34155145	2021
Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 34647263	2022
Uncovering Transcriptional Responses to Fractional Gravity in Roots. Life (Basel, Switzerland)\| PubMed ID: 34685382	2021
The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures. Biochemical Society transactions\| PubMed ID: 35758233	2022
Auxin-cytokinin interplay shapes root functionality under low-temperature stress. Trends in plant science\| PubMed ID: 36599768	2023
The Game of Timing: Circadian Rhythms Intersect with Changing Environments. Annual review of plant biology\| PubMed ID: 36854482	2023
Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions. AoB PLANTS\| PubMed ID: 37228420	2023
Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple. Scientific reports\| PubMed ID: 37919298	2023
Conserved plant transcriptional responses to microgravity from two consecutive spaceflight experiments. Frontiers in plant science\| PubMed ID: 38259952	2023
A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses. The Plant journal : for cell and molecular biology\| PubMed ID: 38289828	2024
An Arabidopsis Cell Culture With Weak Circadian Rhythms Under Constant Light Compared With Constant Dark Can Be Rescued by ELF3. Plant direct\| PubMed ID: 39610858	2024
Physiological and molecular responses to high-temperature stress at anthesis in Brazilian flooded rice. AoB PLANTS\| PubMed ID: 40979130	2025
Expanding frontiers: harnessing plant biology for space exploration and planetary sustainability. The New phytologist\| PubMed ID: 41295882	2026
Practical RNA-Seq with Spike-Ins: A Bench-to-Bioinformatics Guide. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 41917662	2026
Detection and Quantification of Dysprosium in Plant Tissues. Plant direct\| PubMed ID: 41982647	2026