Matthias Heinemann

Molecular Systems Biology, University of Groningen

Affiliated withUniversity of Groningen ETH Zurich

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 10	2013

Other Publications

Article	Year
New insights in the spatially resolved dynamic pH measurement in macroscopic large absorbent particles by confocal laser scanning microscopy. Journal of chromatography. A\| PubMed ID: 14753705	2004
Optimization of enzymatic gas-phase reactions by increasing the long-term stability of the catalyst. Biotechnology progress\| PubMed ID: 15176907	2004
Method for quantitative determination of spatial polymer distribution in alginate beads using Raman spectroscopy. Applied spectroscopy\| PubMed ID: 15901307	2005
In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network. Biotechnology and bioengineering\| PubMed ID: 16155945	2005
Optimization of adsorptive immobilization of alcohol dehydrogenases. Journal of bioscience and bioengineering\| PubMed ID: 16233799	2005
Suitability of teicoplanin-aglycone bonded stationary phase for simulated moving bed enantioseparation of racemic amino acids employing composition-constrained eluents. Journal of chromatography. A\| PubMed ID: 16500665	2006
Integrated operation of continuous chromatography and biotransformations for the generic high yield production of fine chemicals. Journal of biotechnology\| PubMed ID: 16516996	2006
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. Molecular systems biology\| PubMed ID: 16788595	2006
Characterization of the AlkS/P(alkB)-expression system as an efficient tool for the production of recombinant proteins in Escherichia coli fed-batch fermentations. Biotechnology and bioengineering\| PubMed ID: 16865736	2007
Synthetic biology--putting engineering into biology. Bioinformatics (Oxford, England)\| PubMed ID: 16954140	2006
Reporter metabolite analysis of transcriptional profiles of a Staphylococcus aureus strain with normal phenotype and its isogenic hemB mutant displaying the small-colony-variant phenotype. Journal of bacteriology\| PubMed ID: 16980462	2006
Systematic assignment of thermodynamic constraints in metabolic network models. BMC bioinformatics\| PubMed ID: 17123434	2006
Genetics. Getting closer to the whole picture. Science (New York, N.Y.)\| PubMed ID: 17463274	2007
Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus. BMC genomics\| PubMed ID: 17784943	2007
anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data. BMC bioinformatics\| PubMed ID: 18416814	2008
Mass spectrometric method for analyzing metabolites in yeast with single cell sensitivity. Angewandte Chemie (International ed. in English)\| PubMed ID: 18543269	2008
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nature biotechnology\| PubMed ID: 18846089	2008
A divide-and-conquer approach to analyze underdetermined biochemical models. Bioinformatics (Oxford, England)\| PubMed ID: 19126574	2009
Physiology of mycobacteria. Advances in microbial physiology\| PubMed ID: 19573696	2009
Nutritional systems biology modeling: from molecular mechanisms to physiology. PLoS computational biology\| PubMed ID: 19956660	2009
Exploiting cell-free systems: Implementation and debugging of a system of biotransformations. Biotechnology and bioengineering\| PubMed ID: 20091765	2010
Differential glucose repression in common yeast strains in response to HXK2 deletion. FEMS yeast research\| PubMed ID: 20199578	2010
Bacterial adaptation through distributed sensing of metabolic fluxes. Molecular systems biology\| PubMed ID: 20212527	2010
Systems biology of microbial metabolism. Current opinion in microbiology\| PubMed ID: 20219420	2010
Single cell metabolomics. Current opinion in biotechnology\| PubMed ID: 20934866	2011
Thermodynamic calculations for biochemical transport and reaction processes in metabolic networks. Biophysical journal\| PubMed ID: 21081060	2010
From good old biochemical analyses to high-throughput omics measurements and back. Current opinion in biotechnology\| PubMed ID: 21190838	2011
Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics. Molecular systems biology\| PubMed ID: 21283140	2011
Optimization of a blueprint for in vitro glycolysis by metabolic real-time analysis. Nature chemical biology\| PubMed ID: 21423171	2011
The cost of virulence: retarded growth of Salmonella Typhimurium cells expressing type III secretion system 1. PLoS pathogens\| PubMed ID: 21829349	2011
Condition-dependent cell volume and concentration of Escherichia coli to facilitate data conversion for systems biology modeling. PloS one\| PubMed ID: 21829590	2011
Carbon-13 labelling strategy for studying the ATP metabolism in individual yeast cells by micro-arrays for mass spectrometry. Molecular bioSystems\| PubMed ID: 21850345	2011
A flux-sensing mechanism could regulate the switch between respiration and fermentation. FEMS yeast research\| PubMed ID: 22129078	2012
System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes. PLoS computational biology\| PubMed ID: 22416224	2012
Whole lifespan microscopic observation of budding yeast aging through a microfluidic dissection platform. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22421136	2012
Multidimensional optimality of microbial metabolism. Science (New York, N.Y.)\| PubMed ID: 22556256	2012
Prediction of microbial growth rate versus biomass yield by a metabolic network with kinetic parameters. PLoS computational biology\| PubMed ID: 22792053	2012
Functioning of a metabolic flux sensor in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23277571	2013
Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast. Molecular systems biology\| PubMed ID: 23549479	2013
Dissecting specific and global transcriptional regulation of bacterial gene expression. Molecular systems biology\| PubMed ID: 23591774	2013
Construction and use of a microfluidic dissection platform for long-term imaging of cellular processes in budding yeast. Nature protocols\| PubMed ID: 23640166	2013
Mass spectrometry-based metabolomics of single yeast cells. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23671112	2013