Ligand Protonation

Ligand protonation is the addition of one or more protons to a ligand, an acid–base process that changes the ligand’s charge, structure, and ability to bind a metal center. The extent of protonation depends on pH and the ligand’s pKa values: as proton concentration increases, donor atoms such as nitrogen, oxygen, or sulfur may become protonated, reducing or redirecting their availability for coordination. Understanding ligand protonation is essential for predicting metal–ligand speciation, complex stability, and solubility in solution. It supports the design of coordination compounds, interpretation of analytical titrations, and control of metal binding in biological and environmental chemistry.

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Education

JoVE Science Education - Environmental Sciences

Proton Exchange Membrane Fuel Cells

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2023

Source: Laboratories of Margaret Workman and Kimberly Frye - Depaul University The United States consumes a large amount of energy – the current rate is around 97.5 quadrillion BTUs annually. The vast majority (90%) of this energy comes from non-renewable fuel sources. This energy is used for electricity (39%), transportation (28%), industry (22%), and residential/commercial use (11%). As the world has a limited supply of these non-renewable sources, the United States (among others) is...

Ligand Binding Sites

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2020

Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands. Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...

Metal-Ligand Bonds

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2020

The hemoglobin in the blood, the chlorophyll in green plants, vitamin B-12, and the catalyst used in the manufacture of polyethylene all contain coordination compounds. Ions of the metals, especially the transition metals, are likely to form complexes. In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...

Ligand Binding and Linkage

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2020

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...

Research

JoVE EoE - Biomolecular Interaction Detection Techniques

Quantitative In-Cell Hydrogen NMR Spectroscopy to Monitor Protein-Ligand Interactions

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2025

In this video, we demonstrate the in-cell nuclear magnetic resonance spectroscopy technique to study protein-ligand interactions between unlabeled overexpressed proteins and small molecules. The successful ligand-protein interaction is confirmed visually by the appearance of an additional set of peaks in the spectral region of interest that gradually replaces the original peaks.

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