Name: how maldi turns samples into ions
Uploaded: 2025-12-15T15:55:27.000Z
Duration: 1 min 8 s
Channel: JoVE

La spectrométrie d’ionisation par désorption laser assistée par matrice ou MALDI est une technique d’ionisation utilisée pour acquérir des données de masse moléculaire précises pour les biopolymères polaires avec des masses moléculaires allant de quelques quelques à cent mille daltons.
Le processus de préparation des échantillons consiste à mélanger une solution d’analyte avec un matériau matriciel, tel que l’acide 2,5-dihydroxybenzoïque. Ce mélange est ensuite déposé sur une sonde insérée dans le spectromètre de masse.
Lorsque le faisceau laser ultraviolet ou infrarouge est focalisé sur la surface, la matrice absorbe l’énergie laser, entraînant une désorption et une ionisation des molécules de l’échantillon par un transfert de protons de la matrice à la molécule d’analyte, générant des ions protonés.
Les ions nouvellement formés sont accélérés par un champ électrique et séparés en fonction de leur rapport masse/charge dans un analyseur de masse à temps de vol.
Le spectre de masse résultant peut être analysé pour déterminer la masse moléculaire de la biomolécule étudiée.

désorption ionisation laser assistée par matrice (maldi)

Matrix-Assisted Laser Desorption Ionization (MALDI)

La désorption ionisée par laser assistée par matrice (MALDI) est une technique analytique puissante utilisée en spectrométrie de masse. Il permet l’identification et la caractérisation de diverses biomolécules, notamment les protéines, les peptides, les acides nucléiques et les glucides. La spectrométrie MALDI est largement utilisée dans la recherche biologique et médicale, ainsi que dans des domaines tels que la pharmacologie et la biochimie.
L’analyte d’intérêt, une biomolécule ou un mélange de biomolécules, est mélangé à un matériau matriciel approprié. La matrice est généralement un composé organique, tel qu’un petit acide organique ou une substance cristalline, qui facilite l’ionisation. Ce mélange analyte-matrice est ensuite déposé sur une surface cible, inséré dans le spectromètre de masse et séché. Pendant le séchage, la matrice forme de petits cristaux qui incorporent les molécules d’analyte dans leur structure.
Une fois l’échantillon préparé, un laser pulsé est dirigé sur la surface cible. Les molécules matricielles absorbent l’énergie du faisceau laser, ce qui les fait chauffer et se vaporiser rapidement. Ce processus est connu sous le nom de désorption laser. Lorsque les molécules de la matrice se vaporisent, elles transportent les molécules d’analyte intégrées. Les molécules d’analyte vaporisées s’ionisent par un processus appelé transfert de protons. Le transfert de protons se produit entre la matrice et la molécule d’analyte. La molécule matricielle donne un proton à la molécule d’analyte, ce qui entraîne la formation d’ions protonés. Les ions analytes sont ensuite accélérés par un champ électrique et séparés en fonction de leur rapport masse/charge dans un analyseur de masse à temps de vol.
Le spectre de masse obtenu par spectrométrie MALDI fournit des informations précieuses sur la masse et l’abondance relative des biomolécules analysées.

Désorption ionisation laser assistée par matrice (MALDI)

La désorption ionisée par laser assistée par matrice (MALDI) est une technique analytique puissante utilisée en spectrométrie de masse. Il permet l’identification et ...

matrix-assisted-laser-desorption-ionization-maldi

Education

Enseignement

JoVE Core

Analytical Chemistry

Chimie analytique

Unit 1

Unité 1

Mass Spectrometry Fragmentation Methods

Méthodes de fragmentation en spectrométrie de masse

KEY TERMS AND CONCEPTS

TERMES ET CONCEPTS CLÉS

how maldi turns samples into ions

Matrix-assisted laser desorption ionization (MALDI) is a mass spectrometry technique that turns biomolecules into ions for analysis. It is used to identify and characterize proteins, peptides, nucleic acids, and carbohydrates. Because of this, it is common in biological and medical research, as well as pharmacology and biochemistry.

In MALDI, the analyte of interest is mixed with a matrix material. The matrix is usually an organic compound, such as a small organic acid or a crystalline substance, that helps ionization. The analyte-matrix mixture is placed on a target surface, inserted into the mass spectrometer, and dried. As the sample dries, the matrix forms small crystals that trap the analyte molecules inside them.

A pulsed laser is then aimed at the target surface. The matrix absorbs the laser energy, heats up, and vaporizes quickly. This step is called laser desorption. As the matrix leaves the surface, it carries the embedded analyte molecules with it.

The vaporized analyte molecules become ionized by proton transfer. In this step, the matrix donates a proton to the analyte molecule. This forms protonated ions, which can then be accelerated by an electric field. The ions are separated in a time-of-flight mass analyzer based on their mass-to-charge ratio, and the resulting mass spectrum shows the mass and relative abundance of the biomolecules studied.

How MALDI Turns Samples Into Ions

mass spectrometry: long-chain alkane fragmentation

mass-spectrometry-long-chain-alkane-fragmentation

Mass Spectra of Linear Alkane Chains

Mass spectra of linear alkanes show a clear fragmentation pattern. The molecular ion often breaks at a carbon-carbon bond away from the end of the chain. This cleavage forms a stable carbocation and a stable radical, so the middle of the mass-to-charge plot usually has the strongest signals while the ends are weaker. As each bond breaks, a methyl group is lost and the main peaks in the spectrum appear 14 u apart. Smaller peaks near each main signal can also appear. These come from secondary...

mass spectrometry: branched alkane fragmentation

mass-spectrometry-branched-alkane-fragmentation

Branched Alkanes in Mass Spectra

Branched alkanes in mass spectrometry fragment quickly because branching can create stable carbocations. When cleavage happens at a branching point, a secondary or tertiary carbocation may form. That stability helps explain why the molecular ion peak is often very weak or missing compared with a linear alkane. The lesson uses 2-methylbutane, neopentane, and n-pentane to show how this pattern appears in mass spectra. 2-methylbutane and neopentane break apart to form secondary and tertiary...

mass spectrometry: cycloalkane fragmentation

mass-spectrometry-cycloalkane-fragmentation

Cycloalkane Ions and Mass Peaks

Cycloalkane ions in mass spectrometry often give strong peaks because the ring structure helps stabilize the molecular ion. Compared with linear or branched alkanes, this added stability changes how the molecule breaks apart. As a result, cycloalkanes can produce prominent signals in the mass spectrum. Cyclohexane is a clear example. Its molecular ion has an m/z of 84, and this peak is often stronger than the signal from hexane, a linear alkane. The closed ring helps hold the ion together,...

mass spectrometry: alkene fragmentation

Alkene Ion Fragmentation Patterns

Alkene ion fragmentation patterns in mass spectrometry begin when the molecule loses one electron from the unsaturated π bond. This ionization forms a stable molecular ion. The ion can then break apart by three main reaction pathways. The most common pathway is cleavage at the allylic position, which is the carbon next to the double bond. This produces an allylic carbocation that is stabilized by resonance. In terminal alkenes, this fragment appears at a mass-to-charge ratio of 41. In internal...

mass spectrometry: cycloalkene fragmentation

mass-spectrometry-cycloalkene-fragmentation

Cycloalkene Side-Chain Cleavage in Mass Spectra

Cycloalkenes can break apart in a mass spectrometer through retro-Diels–Alder fragmentation. In this process, two carbon-carbon bonds in the ring split, and ethene is released. The remaining fragment is a dienyl radical cation that is 28 u less than the molecular ion. This pathway is similar to the fragmentation of cycloalkanes that also releases ethene. The difference is the type of charged fragment that remains. Cycloalkanes form an alkyl species, while cycloalkenes form a dienyl species.

mass spectrometry: alkyne fragmentation

Alkyne Mass Spectra and Key Peaks

Alkyne mass spectra often show strong peaks from two main fragmentation paths. One path breaks the carbon-carbon bond between the alpha and beta carbons of the alkyne bond. This produces a 3-propynyl cation, also called a propargyl cation. In terminal alkynes, this is the only fragmentation path that gives the 3-propynyl cation. The unsubstituted 3-propynyl cation appears at a mass-to-charge ratio of 39. In internal alkynes, the 3-propynyl cation is substituted. For example, 2-pentyne forms a...

mass spectrometry: alcohol fragmentation

Alcohol Fragmentation Patterns in Mass Spectra

Alcohols fragment in mass spectrometry in predictable ways. When an alcohol, written as R-OH, ionizes, it can lose one non-bonded electron from the oxygen atom. That forms a molecular ion, but the molecular ion peak is often weak or may not appear because alcohols break apart quickly. Two main fragmentation routes are important for alcohols: β-cleavage and dehydration. In β-cleavage, the bond at the β-position next to the hydroxyl group breaks. This gives a resonance-stabilized cation and a...

mass spectrometry: aromatic compound fragmentation

mass-spectrometry-aromatic-compound-fragmentation

Mass Spectra of Benzene and Toluene

Mass spectra of aromatic compounds show a strong molecular ion peak. In ionization, the molecule becomes a molecular ion, which appears as a prominent peak in the spectrum. Benzene gives a molecular ion at m/z 78, and toluene gives one at m/z 92. Benzene’s molecular ion is especially stable. It does not fragment readily because breaking the aromatic benzene ring requires a large amount of energy. Alkyl-substituted benzenes behave differently in mass spectrometry. Toluene can lose a hydrogen...

mass spectrometry: amine fragmentation

Amines in Mass Spectra: Nitrogen Rule

Amines can be identified in mass spectrometry by their fragmentation patterns and by the nitrogen rule. The molecular ions of amines often break apart through β-cleavage, which cuts a carbon-carbon bond next to the nitrogen. This process forms an alkyl radical and a resonance-stabilized nitrogen-containing cation. The nitrogen rule helps predict the mass of the molecular ion. A compound with one nitrogen atom, or any odd number of nitrogen atoms, gives a molecular ion with an odd molecular...

mass spectrometry: alkyl halide fragmentation

mass-spectrometry-alkyl-halide-fragmentation

Mass Spectra of Alkyl Halides

Mass spectra of alkyl halides show clear isotope patterns from the halogen atom. Chlorine has two common isotopes, 35Cl and 37Cl, in a 3:1 ratio. Bromine has two common isotopes, 79Br and 81Br, in a 1:1 ratio. These isotope ratios create two molecular ion peaks, [M] and [M + 2], with relative heights that match the halide abundance. This pattern is easy to see in examples such as 2-chloropropane and 1-bromopropane. 2-Chloropropane gives peaks in a 3:1 ratio. 1-Bromopropane gives peaks in a 1:1...

mass spectrometry: aldehyde and ketone fragmentation

mass-spectrometry-aldehyde-and-ketone-fragmentation

Carbonyl Fragment Patterns in Mass Spectra

Aliphatic aldehydes and ketones break apart in mass spectrometry through a few key carbonyl fragment patterns. The main pathways are alpha-cleavage, inductive cleavage, and the McLafferty rearrangement. These patterns help chemists read the mass spectrum and spot a carbonyl group. Alpha-cleavage is a common break next to the carbonyl group. The bond beside the carbonyl splits, and this forms an alkyl radical and an acylium cation. The acylium cation is often seen in the spectrum because it is...

mass spectrometry: carboxylic acid, ester, and amide fragmentation

mass-spectrometry-carboxylic-acid-ester-and-amide-fragmentation

Mass Spectra of Carboxylic Compounds

Mass spectra of carboxylic acids, esters, and amides often show two key fragmentation routes: β-cleavage and McLafferty rearrangement. In β-cleavage, the carbon-carbon bond at the β-position next to the carboxylic group breaks. This produces a neutral radical and a cation. Long-chain compounds can also fragment by McLafferty rearrangement if they have a hydrogen on the γ-carbon. The γ-carbon is the third carbon away from the carboxylic group. This rearrangement gives a radical cation and a...

chemical ionization (ci) mass spectrometry

Using Reagent Gas in CI Mass Spectrometry

Chemical ionization mass spectrometry uses a reagent gas to help detect molecules that break apart too quickly in electron impact ionization. It is a milder ionization method that can extend the life of the ionized analyte, which makes molecular identification easier. In chemical ionization, the sample is mixed with an excess reagent gas. This setup makes the electron impact occur mainly on the reagent gas instead of on the analyte. The charged species formed from the reagent then protonates...

electrospray ionization (esi) mass spectrometry

electrospray-ionization-esi-mass-spectrometry

How ESI Turns Biomolecules Into Ions

Electrospray ionization, or ESI, is a mass spectrometry method used to detect biomolecules that are too large or nonvolatile for conventional electron impact ionization. These molecules may break down before they can ionize or evaporate. ESI helps prevent rapid fragmentation and lets scientists record a mass signal for the whole biomolecule. ESI uses electrical energy to move ions from the liquid phase into the gas phase. The analyte biomolecule is mixed with an ionic liquid, which is a...

matrix-assisted laser desorption ionization (maldi)

Matrix-assisted laser desorption ionization (MALDI) is a mass spectrometry technique that turns biomolecules into ions for analysis. It is used to identify and characterize proteins, peptides, nucleic acids, and carbohydrates. Because of this, it is common in biological and medical research, as well as pharmacology and biochemistry. In MALDI, the analyte of interest is mixed with a matrix material. The matrix is usually an organic compound, such as a small organic acid or a crystalline...

key terms and concepts

Learn how MALDI uses a matrix, laser desorption, and proton transfer to create ions for mass spectrometry analysis of biomolecules.

How MALDI Turns Samples Into Ions | JoVE K12

analytical chemistry

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How MALDI Turns Samples Into Ions

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