2.11
分子の形
分子の形は、その機能と他の分子との相互作用に寄与します。長年にわたり、分子を視覚的に描写するため多くの異なるモデルが開発されてきました。
分子の 2 次元描写
ルイス構造式はギルバート・ニュートン・ルイスによって開発され、1916 年に論文「原子と分子」にてこれら構造式は最初に出版されました。ルイス構造…
Molecules have characteristic shapes that are important for their functions.
Any diatomic molecule, such as molecular oxygen or hydrogen, is always linear.
As the number of atoms increases, the arrangement of electrons around the central atom influences the shape of the molecule, allowing it to bend and form more complex structures.
Negatively charged electron groups repel one another and try to stay as far apart as possible.
For example, in a water molecule, the oxygen atom forms two bonding pairs of electrons with two hydrogen atoms and has two additional pairs of electrons that are not involved in bonding, called lone pairs of electrons.
These two lone pairs push the bonding pairs around the oxygen atom to about 104.5 degrees, where repulsion is lowest, giving the water molecule a bent shape.
Some biological molecules, such as DNA and proteins, may contain anywhere from a few to millions of atoms.
These large biomolecules are stabilized by intermolecular forces, such as hydrogen bonding, or intramolecular forces, like hydrophobic interactions, allowing them to form long chains and rings that fold into three-dimensional shapes.
They also use structure-specific recognition to interact with other molecules.
For example, opiates with active regions that are structurally similar to endorphins can bind to endorphin receptors and relieve pain.
View the full transcript and gain access to JoVE Core videos
Q1: Why do diatomic molecules like oxygen and hydrogen have linear shapes?
Diatomic molecules are always linear because they contain only two atoms bonded together. The two electron groups position themselves on opposite sides of the central atom to minimize repulsion between electron pairs, resulting in a straight 180-degree arrangement that keeps the atoms as far apart as possible.
Q2: How do lone pairs affect the shape of a water molecule?
Water's oxygen atom has two bonding pairs with hydrogen atoms and two lone pairs of electrons. These lone pairs repel the bonding pairs, pushing them closer together and creating a bent shape with a bond angle of approximately 104.5 degrees. Understanding electron behavior and valence electrons helps explain why lone pairs occupy more space than bonding pairs.
Q3: What is the difference between electron-pair geometry and molecular structure?
Electron-pair geometry describes all regions where electrons are located, including both bonding pairs and lone pairs. Molecular structure describes only the positions of atoms in the molecule. These are identical only when no lone pairs are present around the central atom.
Q4: Why do lone pairs occupy more space than bonding pairs?
A lone pair is bound to only one nucleus, while a bonding pair is shared between two nuclei. This makes lone pairs occupy larger regions of space. Consequently, lone pair-lone pair repulsions are stronger than lone pair-bonding pair or bonding pair-bonding pair repulsions, significantly influencing molecular geometry.
Q5: How do electron groups arrange themselves in molecules with different numbers of electron pairs?
Electron groups arrange to minimize repulsion by maximizing distance. Two groups form linear geometry, three form trigonal planar, four form tetrahedral, five form trigonal bipyramidal, and six form octahedral arrangements. This principle, based on electron pair repulsion, determines the three-dimensional structure of molecules.
Q6: What role does molecular shape play in how biomolecules interact with other molecules?
Molecular shape is critical for structure-specific recognition, allowing biomolecules to interact selectively with other molecules. For example, opiates with active regions structurally similar to endorphins can bind to endorphin receptors. Large biomolecules like DNA and proteins fold into specific three-dimensional shapes stabilized by hydrogen bonding and hydrophobic interactions.
Q7: How does electron pair repulsion determine the geometry of molecules?
Negatively charged electron groups repel one another and position themselves as far apart as possible to minimize repulsion. This principle governs how bonding pairs and lone pairs arrange around a central atom. The resulting geometry directly determines the molecule's shape and its chemical properties.