Organoid Morphology

Organoid morphology is the study of the size, shape, spatial organization, and structural features of three-dimensional cell cultures that model aspects of organs. Researchers examine organoids using microscopy to assess features such as lumen formation, tissue layering, cellular arrangement, branching, and surface structure, which arise as cells proliferate, differentiate, and self-organize. In neuroscience, morphological analysis helps characterize brain and neural organoids, track developmental patterning, and identify changes associated with genetic disorders or experimental treatments. Standardized measurements can reveal how culture conditions influence tissue formation and provide structural evidence for comparing disease models, evaluating drugs, and improving the reproducibility of organoid-based research.

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JoVE EoE - Urinary Tract Cancer

Bladder Tumor Organoid Model: A Method for Orthotopic Transplantation of Bladder Organoids into Recipient Murine Bladder

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2023

In this video, we describe the orthotopic transplantation of cultured bladder tumor organoids into the murine bladder to study the role of the organ environment on developing tumors.

Organoid Electroporation: A Method to Transfect Plasmid DNA into Gastrointestinal Organoids

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2023

This video describes the electroporation protocol for transfecting large plasmids into three-dimensional gastrointestinal organoids to prove its universal functionality in different entities, namely pancreatic ductal adenocarcinoma (PDAC), colorectal cancer (CRC), cholangiocarcinoma (CCC), and gastric cancer (GC) organoids.

Rectal Organoid Morphology Analysis (ROMA): A Diagnostic Assay in Cystic Fibrosis

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2022

This protocol describes rectal organoid morphology analysis (ROMA), a novel diagnostic assay for cystic fibrosis (CF). Morphological characteristics, namely the roundness (circularity index, CI) and the presence of a lumen (intensity ratio, IR), are a measure of CFTR function. Analysis of 189 subjects showed perfect discrimination between CF and non-CF.

CRC Organoid Culture: A Method to Obtain 3D Organoids from Colorectal Cancer Cells

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2023

This video describes the detailed protocol for generating 3D organoids from murine-model derived colorectal cancer cells by propagating them on artificial extracellular matrix coated plates. These CRC organoids can be used as a model to study the primary growth of human tumor cells and metastasis.

Processing of Lentivirus-Transduced Mouse Intestinal Organoids for Immunohistochemical Analysis

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2026

Source: Van Lidth de Jeude, J. F., et al. A Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids. J. Vis. Exp. (2015).This video demonstrates the processing of lentivirus-transduced mouse intestinal organoids for paraffin embedding, to enable their downstream analysis for assessing gene expression.

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