This protocol describes an ink-free, label-free, substrate-independent, high-throughput cell patterning method based on the Magnetic Archimedes effect.
Cell patterning, allowing precise control of cell positioning, presents a unique advantage in the study of cell behavior. In this protocol, a cell patterning strategy based on the Magnetic-Archimedes (Mag-Arch) effect is introduced. This approach enables precise control of cell distribution without the use of ink materials or labeling particles. By introducing a paramagnetic reagent to enhance the magnetic susceptibility of the cell culture medium, cells are repelled by magnets and arrange themselves into a pattern complementary to the magnet sets positioned beneath the microfluidic substrate.
In this article, detailed procedures for cell patterning using the Mag-Arch-based strategy are provided. Methods for patterning single-cell types as well as multiple cell types for co-culture experiments are offered. Additionally, comprehensive instructions for fabricating microfluidic devices containing channels for cell patterning are provided. Achieving this feature using parallel methods is challenging but can be done in a simplified and cost-effective manner. Employing Mag-Arch-based cell patterning equips researchers with a powerful tool for in vitro research.
Cell patterning is evolving into an intuitive and powerful technology for in vitro studies1. By manipulating cell positions in culture plates, it provides solutions for a variety of experiments, including cell migration2, biomimetic multicellular co-culture3, organoid assembly4, biomaterial studies5, and more. In most situations, an ink-free, label-free method is preferred for cell patterning because it offers ease of operation and high cell viability for subsequent investigations.
The Mag-Arch effect is a physical phenomenon wherein diamagnetic objects in paramagnetic liquids tend to move toward regions with weak magnetic fields6. Living cells are naturally diamagnetic, while cell culture media can be made paramagnetic by adding soluble paramagnetic elements, such as gadopentetate dimeglumine (Gd-DTPA), commonly used intravenously in nuclear magnetic resonance imaging as a contrast agent7. Consequently, cells are expected to be repelled by the surrounding paramagnetic medium and move toward regions where magnetic fields are weaker8. A patterned magnetic field can be easily generated using a set of neodymium magnets. Ideally, cell patterns are assembled in opposition to the magnet patterns. Technically, this is defined as a label-free method because the only additional reagent, Gd-DTPA, remains in the extracellular environment and does not bind to cells. Thus, potential influences on subsequent cell culture can be easily avoided by replacing the culture medium. Compared to other methods1,3,9,10, the Mag-Arch-based strategy does not require bio-ink components or the application of specific particles to positively label the cells. Furthermore, it has been shown to work on multiple substrates for cell adhesion and is capable of high-throughput cell patterning4.
This article presents a detailed protocol for cell patterning using the Mag-Arch-based method, covering everything from device fabrication to adjusting the cell pattern. In addition to the patterns we have demonstrated, users can easily create various cell patterns using magnets and Gd-DTPA solution. Furthermore, protocols for assembling complex co-culture patterns and manipulating cells in enclosed microfluidic chips, are also provided.
1. Assembling the magnet sets
2. Cell patterning on glass slides
3. Co-culture patterning by magnet sideways: fabrication of the moving template
NOTE: The following procedure is presented to take advantage of Mag-Arch-based cell patterning and explore the possibility of more applications.
4. Co-culture patterning by adjusting the concentration of Gd-DTPA
NOTE: GBCAs do not significantly affect cell adhesion or subsequent growth at working concentrations (≤75 mM). Additionally, cell patterns are influenced by the concentration of Gd-DTPA: higher concentrations result in smaller/thinner cell patterns. Thus, it is possible to create co-culture systems by simply adjusting the concentration of Gd-DTPA. This example demonstrates patterning concentric circular arrays.
5. Cell patterning in microfluidic chip
NOTE: The Mag-Arch-based method has been demonstrated to work in enclosed narrow chambers in our previous study8. Here is an example of patterning dot arrays in a microfluidic channel.
Rectangular (1.5 mm × 10 mm × 35 mm) and cylindrical (Φ1.5 m × 10 mm) magnets were selected to create cell patterns as a demonstration. Users have the flexibility to modify the size and shape of magnets or assemble them differently to create diverse cell patterns. In Figure 1A,B, the magnets were assembled, with the magnetic poles depicted in blue (south) and red (north) for clarity. In this configuration, magnets attract each other laterally and align themselves, as illustrated in Figure 2. Figure 1C,D illustrates the structure of the cell culture device and the cell patterning procedure.
Figure 2 displays mono-type cell patterns. GFP-labeled HUVECs were utilized for observation under a fluorescent microscope. The cells were organized into stripe and dot array patterns using corresponding magnet sets. For HUVECs, which adhere rapidly to glass slides (within 120-180 min), the entire procedure was completed in 4 h. Following the protocol resulted in patterns with well-defined edges and high uniformity. To determine the viability, the cells were treated with Gd-DTPA for 12 h, which is much longer than 3-6 h in step 2. However, both Live/Dead staining and CCK8 assay8 showed no significant decrease in cell viability. A relatively high concentration of Gd-DTPA (50 mM) induced a statistical difference, but still preserved a living rate of 90.76% ± 1.78% (Supplementary Figure 1).
Building upon the mono-type cell patterning protocol, multi-type cell patterning examples were provided for potential co-culturing applications. In this scenario, HUVECs, A2780 ovarian cancer cells, and smooth muscle cells (SMCs) were employed. To distinguish between them, the cells were labeled with GFP, DiD, and DiI before patterning. By following step 3, a tripartite cell pattern of side-by-side stripes was generated (Figure 3A). Conversely, step 4 was used to create concentric dot arrays by adjusting the concentration of Gd-DTPA (Figure 3B). The first layer of cells was stained with DiI (red) and patterned with 50 mM Gd-DTPA, while the second layer of cells was labeled with GFP (green) and patterned with 25 mM Gd-DTPA. Consequently, the dot size of the first layer was smaller, surrounded concentrically by the second layer of dot-patterned cells. Different cell types exhibited varying attachment and spreading rates, with HUVECs attaching and spreading quickly, A2780s attaching rapidly but spreading more slowly, and SMCs attaching and spreading relatively slowly. These results demonstrated that various cell types could form cell patterns in 3 h and be utilized in co-culture experiments.
Furthermore, it was demonstrated that cell patterning using a magnetic field was compatible with enclosed narrow culture devices, such as microfluidic chips. By following step 5, microfluidic chips were fabricated, and dot arrays were generated within them (Figure 4).
Figure 1: Setup and schematic diagram of mag-arch-based cell patterning. (A) Assembly of magnet sets for creating stripe cell patterns. (B) Assembly of magnet sets for generating dot array cell patterns. (C) Setup of the cell culture device. (D) Step-by-step procedure for cell patterning. Please click here to view a larger version of this figure.
Figure 2: Assembly of devices and patterning HUVECs into stripe and dot array patterns. (A) Magnet sets confined within cell culture devices (i) and placed in a cell culture plate (ii). (B) and (C) Magnet sets and the corresponding cell patterns. Cells were labeled with green fluorescent protein (GFP) for visualization of the cell pattern. Scale bars = 1.5 mm; insets = 500 µm. Please click here to view a larger version of this figure.
Figure 3: Patterning co-culture systems with step-by-step strategy. (A) Co-culture patterning using magnet sideways (i–iii). Cells were labeled with GFP (green), DiD (blue), and DiI (red) to distinguish different cell types. Scale bars = 1 mm. (B) Co-culture patterning achieved by adjusting Gd-DTPA concentration; (i) 50 mM, (ii) 20 mM. Scale bars = 1.5 mm; insets = 250 µm. Please click here to view a larger version of this figure.
Figure 4: Cell patterning in a microfluidic chamber. (A) Schematic diagram of the microfluidic mold. (B) Fabrication of microfluidics using polydimethylsiloxane (PDMS) (i,ii). (C) Cell patterning within the microfluidic device (i,ii) and a representative result showing dot array cell patterns (iii). Cells were labeled with green fluorescent protein (GFP). Scale bar = 3 mm. Please click here to view a larger version of this figure.
Supplementary Figure 1: Influence of Gd-DTPA on cell viability. HUVECs were treated with varying concentrations of Gd-DTPA for 12 h and then subjected to Live/Dead staining or CCK-8 assay. (A) Live/Dead staining of HUVECs. Scale bars = 200 µm. (B) Histogram depicting Live/Dead staining results. (C) Histogram showing CCK-8 assay results. Please click here to download this File.
The Mag-Arch-based cell patterning provides a user-friendly solution for most biomedical laboratories. This method advances parallel to characters of ink-free, label-free, substrate-independent, and the ability for high-throughput patterning8,13. For mono-type cell patterning, it patterns cells in a one-step way. The procedure finishes simply by refreshing culture mediums.
Previous studies have used magnetic particles to label cells and attract them with magnets to form precise patterns14,15. However, the presence of magnetic particles on cells raised concerns about potential effects on cell behaviors. Mag-Arch-based cell patterning takes the opposite strategy by turning extracellular liquids paramagnetic, rather than cells. This strategy makes it much easier to remove the extra paramagnetic reagents by refreshing the culture medium. Studies have generated cellular spheres and dot arrays with Mag-Arch-based cell patterning11,16. Compared to existing Mag-Arch-based studies, the methods presented by this protocol can customize the shape of patterns freely. Moreover, the protocol presents strategies for fabricating co-culture systems. It has also been proven to work inside enclosed narrow cell culture chambers, as we tested in microfluidics.
Rather than parallel methods, which require professional bioprinting equipment17, customized templates18, or surface modification of complex19, the Mag-Arch-based method requires only two necessities: magnets and GBCAs. The surface of the magnet pattern determines the cell pattern reversely. Several patterns of stripes and dot arrays as basic were demonstrated. Users may generate patterns at liberty with different shapes of magnet sets, which are abundantly commercially available. To attain an ideal result, it is recommended to adopt magnets that supply sufficient magnetic force. In our practice, we adopted N52 neodymium-iron-boron magnets, whose remanence was over 1430 mT and surface magnetism was over 100 mT on poles. For GBCAs, Gd-DTPA was adopted because it is stable in physiological conditions and cheaply available in most countries and areas. Other GBCAs could be adopted alternatively. Macrocyclic non-ionic GBCAs, such as gadobutrol and gadoteridol, could be a better choice for lower cytotoxicity when patterning vulnerable cells for long-term treatment11,12.
The limitation of Mag-Arch-based cell patterning mainly lies in the working area of the magnetic field generated by magnets. Following the inverse-square formula, the magnetic field decreases sharply with distance8. As a consequence, the Mag-Arch method fails to assemble ideal cell patterns on general polystyrene cell culture dishes or plates, whose bottoms are thicker than 1 mm. Thus, the protocol has to work on thinner cell culture surfaces, such as glass slides or confocal cell culture dishes. When patterning inside microfluidics, it is also required that the bottom slides of microfluidics should be thinner than 0.5 mm. For establishing co-culture systems, the method might be time-consuming, for each additional cell type increases the time by 3-6 h for cell attachment.
Overall, this protocol provides a simplified way for cell patterning, which could be replicated in most laboratories without any special equipment. Users may adopt it as a powerful tool for studying cell behaviors, mimicking multicellular microenvironments, or testing the cell affinity of biomaterials8.
The authors have nothing to disclose.
This study is financially supported by the National Key R&D Program of China (2021YFA1101100), the National Natural Science Foundation of China (32000971), the Fundamental Research Funds for the Central Universities (No. 2021FZZX001-42), and the Starry Night Science Fund of Zhejiang University Shanghai Institute for Advanced Study (Grant No. SN-ZJU-SIAS-004).
A2780 ovarian cancer cells | Procell | CL-0013 | |
Cell culture medium (DMEM, high glucose) | Gibco | 11995040 | |
Cover slides | Citotest Scientific | 80340-3610 | For fabricating microfluidics. Dimension: 24 mm × 50 mm |
DiD | MedChemExpress (MCE) | HY-D1028 | For labeling cells with red fluorescence (Ex: 640 nm) |
DiI | MedChemExpress (MCE) | HY-D0083 | For labeling cells with orange fluorescence (Ex: 550 nm) |
Fetal Bovine Serum (FBS) | Biochannel | BC-SE-FBS07 | |
Gadopentetate dimeglumine (Gd-DTPA) | Beijing Beilu Pharmaceutical | H10860002 | |
Gelatin | Sigma Aldrich | V900863 | |
Glass cell slides | Citotest Scientific | 80346-2510 | Diameter: 25 mm; thickness: 0.19-0.22 mm |
Glass plates | PURESHI hardware store | For fabricating microfluidics. Dimension: 40 mm × 75 mm | |
Human Umbilical Vein Endothelial Cells (HUVECs) | Servicebio | STCC12103G-1 | |
Neodymium-iron-boron magnets (N52) | Lalaci | ||
Non-toxic glass plate coating (Gel Slick Solution) | Lonza | 1049286 | For convenience of demolding when fabricating microfluidics |
Phosphate Buffered Saline (PBS) | Servicebio | G4200 | |
Plasma cleaner | SANHOPTT | PT-2S | |
Polydimethylsiloxane (PDMS) kit | DOWSIL | SYLGARD 184 Silicone Elastomer Kit | For fabricating microfluidics |
Polytetrafluoroethylene (PFTE) mold | PURESHI hardware store | Customized online, for fabricating microfluidics | |
Silicon plate | PURESHI hardware store | ||
Smooth Muscle Cells (SMC) | Procell | CL-0517 | |
Ultrasonic cleaner | Sapeen | CSA-02 |