Virus Sampling

Virus sampling is the systematic collection of environmental materials to detect, measure, and characterize viruses, providing evidence of viral presence beyond clinical settings. The process involves selecting representative sites and sample types, collecting them under controlled conditions, preserving viral particles or nucleic acids, and concentrating or extracting targets before molecular or culture-based analysis. In environmental research, samples from water, wastewater, soil, surfaces, or air can support surveillance of viral circulation, contamination, and persistence. Careful sampling design and quality control improve detection reliability, help identify potential exposure pathways, and strengthen studies of ecosystem health and public health risk.

Virus Sampling - Related Videos

Research

JoVE EoE - Viral Growth and Techniques

Quantifying Infectious Viruses in Water Samples Using an In Vitro Total Culturable Virus Assay

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2026

Source: Fout, G. S., Cashdollar, J. L. EPA Method 1615. Measurement of Enterovirus and Norovirus Occurrence in Water by Culture and RT-qPCR. II. Total Culturable Virus Assay. J. Vis. Exp. (2016)This video demonstrates the use of a total culturable virus assay to quantify infectious viruses in water samples. It outlines host cell inoculation, observation of cytopathic effect, and statistical quantification of infectious virus concentration.

Research

JoVE Journal - Medicine
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Unbiased Deep Sequencing of RNA Viruses from Clinical Samples

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Cited by 50 •

2016

This protocol describes a rapid and broadly applicable method for unbiased RNA-sequencing of viral samples from human clinical isolates.

Environmental Sampling of Photosynthetic Microbes and Their Viruses: From Field to Lab

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2025

Here, we describe methods of sampling from the euphotic zones of marine and freshwater ecosystems to isolate cyanophages (and their hosts) and post-sampling processes that enrich single genotypes and characterize virus-host interaction dynamics.

VirWaTest, A Point-of-Use Method for the Detection of Viruses in Water Samples

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Cited by 2 •

2019

Here we present VirWaTest, which is a simple, affordable and portable method for the concentration and detection of viruses from water samples at the point of use.

Amoeba-Based Enrichment of Giant Viruses from an Environmental Water Sample

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2026

Source: Bou Khalil, J. Y.,et al. A Rapid Strategy for the Isolation of New Faustoviruses from Environmental Samples Using Vermamoeba vermiformis. J. Vis. Exp. (2016)This video demonstrates the enrichment of giant viruses from an environmental water sample using amoeba-based co-culture to enable downstream detection and analysis.

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