Method Article

Visualization and Mapping of Neuronal Pathways in an Amygdala Brain Slice

July 8th, 2025

In This Article

Abstract

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Source: Bosch, D., et al. Ex Vivo Optogenetic Dissection of Fear Circuits in Brain Slices. J. Vis. Exp. (2016).

This video demonstrates a procedure for analyzing synaptic connectivity between medial prefrontal cortex (mPFC) and amygdala neurons using acute amygdala brain slices from mice. The mPFC neurons in these mice express channelrhodopsin fused to a fluorescent protein. The channelrhodopsins facilitate ion influx and action potential generation in the mPFC neurons upon light activation. Consequently, mPFC neurons release neurotransmitters that bind to postsynaptic amygdala neurons, triggering postsynaptic currents that are recorded to visualize mPFC-amygdala connectivity.

Protocol

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All procedures involving animal samples have been reviewed and approved by the appropriate animal ethical review committee.

1. Visualization and Stimulation of Presynaptic Fibers

  1. Prepare patch microscope for optogenetic activation of fibers and cells:
    1. Center the mounted light emitting diode (LED) onto the light delivery pathway.
    2. Measure the LED light intensity at the back focal plane and at the output of each objective with a power meter choosing the appropriate wavelength of 470 nm.
    3. Calculate the light intensity in mW/mm2 and create a calibration curve (LED intensity....

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Results

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Stereotactic virus injection schematic: viral constructs, brain slice visualization, mCherry labeling.
Figure 1. Stereotactic Injections, Preparation of Acute Brain Slices, and Visualization of Presynaptic Fibers. (A, B) Stereotactic virus injection. A) Picture of anesthetized mouse placed in a stereotactic frame with skull exposed and.......

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Disclosures

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No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Artificial cerebrospinal fluid (ACSF)for composition see references #16 and #23
Internal patch solutionsfor composition see references #16 and #23
MagnesiumSulfate HeptahydrateRoth, GermanyP027.1prepare 2M stock solution in purified water
Stereoscope, SZX2-RFA16Olympus, Japan
Xcite fluorescent lamp (XI120Q-1492)Lumen Dynamics Group, Canada2012-12699
Patch microscope, BX51WIOlympus, Japan
Multiclamp 700B patch amplifierMolecular Devices, USA
Digitdata 1440AMolecular Devices, USA
PClamp software, Version 10Molecular Devices, USAused to control data acquisition and stimulation
Bath temperature controler, TC05Luigs & Neumann, Germany200-100 500 0145
Three axis micromanipulator Mini 25Luigs & Neumann, Germany210-100 000 0010
Micromanipulator controller SM7Luigs & Neumann, Germany200-100 900 7311
Glass capillaries for patch pipettesWorld Precision Instruments, GermanyGB150F-8P
Cellulose nitrate filterpaper for interface chamberSatorius Stedim Biotech, Germany13006--50----ACN
LED unit, CoolLED pECoolLED, UK244-1400CoolLED or USL 70/470 and appropriate adapters are two alternative choices for LED stimulation
CoolLED 100 Dual AdaptCoolLED, UKpE-ADAPTOR-50E
LED unit, USL 70/470Rapp OptoelectronicL70-000
Dual port adapterRapp Optoelectronicinquire with company
Filter set red (excitation)AHF, GermanyF49-560Filters can be bought as set F46-008
(beamsplitter)AHF, GermanyF48-585
(emission)AHF, GermanyF47-630
Filter set green (excitation)AHF, GermanyF39-472Alternatives: filterset F36-149 or F46-002 (with bandpass emission)
(beamsplitter)AHF, GermanyF43-495W
(emission)AHF, GermanyF76-490
LaserCheck, handheld power meterCoherent, USA1098293
IgorPro Software, Version 6Wavemetrics, USAfor electrophysiology data analysis, other alternative software packages can also be used
Neuromatic suite of macros for IgorProhttp://www.neuromatic.thinkrandom.com

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Tags

Amygdala Brain SlicemPFC Amygdala ConnectivityChannelrhodopsin ActivationOptogenetic DissectionPatch Clamp RecordingFluorescence MicroscopyLED Light CalibrationPostsynaptic Current AnalysisFear Circuit MappingSynaptic Connectivity Visualization

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