Electrophoretic Mobility

Electrophoretic mobility is the velocity of a charged particle or molecule per unit electric-field strength as it moves through a fluid or gel, providing a measure of how electrical forces and resistance govern motion. When an electric field is applied, the particle’s net charge drives migration while viscous drag, particle size, shape, and interactions with the surrounding medium limit its speed; mobility is commonly expressed as μ = v/E. In physics and analytical science, measuring electrophoretic mobility helps characterize colloids, proteins, nucleic acids, and other charged materials, assess surface charge and stability, and separate or identify components in complex samples.

Electrophoretic Mobility - Related Videos

Education

JoVE Science Education - Chemistry

Electrophoretic Mobility Shift Assay (EMSA)

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2023

The electrophoretic mobility shift assay (EMSA) is a biochemical procedure used to elucidate binding between proteins and nucleic acids. In this assay a radiolabeled nucleic acid and test protein are mixed. Binding is determined via gel electrophoresis which separates components based on mass, charge, and conformation. This video shows the concepts of EMSA and a general procedure, including gel and protein preparation, binding, electrophoresis, and detection. Applications covered in this video...

Research

JoVE EoE - Biomolecular Interaction Detection Techniques

Electrophoretic Mobility Shift Assay for Detection of Transcription Factor-DNA Complexes

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2025

In this video, we demonstrate the electrophoretic mobility shift assay to detect protein-DNA interactions using infrared fluorescent-labeled DNA probes. When the protein binds to the DNA probe, it forms a large complex that migrates slowly on and appears as a shifted band on the gel.

Screening for Functional Non-coding Genetic Variants Using Electrophoretic Mobility Shift Assay (EMSA) and DNA-affinity Precipitation Assay (DAPA)

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Cited by 15 •

2016

We present a strategic plan and protocol for identifying non-coding genetic variants affecting transcription factor (TF) DNA binding. A detailed experimental protocol is provided for electrophoretic mobility shift assay (EMSA) and DNA affinity precipitation assay (DAPA) analysis of genotype-dependent TF DNA binding.

An Optimized Protocol for Electrophoretic Mobility Shift Assay Using Infrared Fluorescent Dye-labeled Oligonucleotides

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Cited by 14 •

2016

We describe here an optimized protocol of fluorescent Electrophoretic Mobility Shift Assays (fEMSA) using purified SOX-2 proteins together with infrared fluorescent dye-labeled DNA probes as a case study to tackle an important biological question.

Electrophoretic Mobility Shift Assay (EMSA) for the Study of RNA-Protein Interactions: The IRE/IRP Example

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Cited by 37 •

2014

Here we present a protocol to analyze RNA/protein interactions. The electrophoretic mobility shift assay (EMSA) is based on the differential migration of RNA/protein complexes and free RNA during native gel electrophoresis. By using a radiolabeled RNA probe, RNA/protein complexes can be visualized by autoradiography.

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